Rmu_sc0000147.1_g000024

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000147.1
OG0001428
Physical Location & Seq
Forward (+)
81659 .. 86256
4598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000147.1_g000024.1.cds

Sequence Viewer

Length: 852 bp
atgggttctccgaatgtgcgaaacagtactcccaatgaatctcctggtaatgggcttccggttgagaaaattcctgaagaaaattcagattttgatcgtgcagtttcgttgtccttgaagacagcagaacaagagaaagcaatacgtgagatgcagctgaacgacaggaatcaagatccaggagtttatagtacacgaaagcaaggaaggtcatcacagcaaaatggagctgaagttgtagagcagcaattagttagtgaagagtctaagcgtgatggtggtagtcatcttcagcagggaaaactggtagctcacagtgatgtggatgatgagtatcttgcatcccacttagctgataaagagaaagaaatgaatgttgtccatgaagctgcaacttgtcagttgaagggagatgtcaacaaaagaatcgagccaatggtagtgtacaatggtaccttcagacaacagcaagcatataagcccctgttgtctggcatagccttcagacaacagcaagcatataagcccctgttgtctggcatagccttcagacaacagcaagcatataagcccctgttgtctggcatagccttcagacaacagcaagcatataagcccctgttgtctggcatagccttcagacaacagcaagcatataagcccctgttgtctggcatagccttcagacaacagcaagcatataagcccctgttgtctggcacagcattcagacaaccgttggtgtgcgaggacataactgggggtctagaggatactgccattctatctagcaatttggtcgatgatccgcctgttgctcctacaagcaagttgatcatgttcatggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

283

Amino Acids

31.42

Weight (kDa)

6.47

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 452
AciI CCGC 1 cut(s) 809
AclWI GGATC 2 cut(s) 170, 800
AcsI RAATTY 2 cut(s) 69, 82
AcuI CTGAAG 9 cut(s) 96, 252, 275, 442, 487, 532, 577, 622, 667
AfaI GTAC 4 cut(s) 28, 193, 446, 454
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 2 cut(s) 118, 406
AjnI CCWGG 2 cut(s) 43, 178
AluBI AGCT 5 cut(s) 157, 230, 311, 353, 389
AluI AGCT 5 cut(s) 157, 230, 311, 353, 389
AlwI GGATC 2 cut(s) 170, 800
ApeKI GCWGC 3 cut(s) 154, 244, 389
ApoI RAATTY 2 cut(s) 69, 82
Asp718I GGTACC 1 cut(s) 452
BaeI ACNNNNGTAYC 2 cut(s) 436, 469
BanI GGYRCC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 166, 256, 376
BccI CCATC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 781, 815
BciT130I CCWGG 2 cut(s) 45, 180
BciVI GTATCC 1 cut(s) 766
BclI TGATCA 1 cut(s) 834
BfaI CTAG 2 cut(s) 767, 789
BfuI GTATCC 1 cut(s) 766
BisI GCNGC 3 cut(s) 155, 245, 390
BlsI GCNGC 3 cut(s) 156, 246, 391
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 45, 180
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 2 cut(s) 45, 180
BmrI ACTGGG 1 cut(s) 768
BmsI GCATC 2 cut(s) 141, 350
BmuI ACTGGG 1 cut(s) 768
BpiI GAAGAC 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 146
BsaBI GATNNNNATC 2 cut(s) 93, 333
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 309, 763
Bse8I GATNNNNATC 2 cut(s) 93, 333
BseBI CCWGG 2 cut(s) 45, 180
BseGI GGATG 2 cut(s) 331, 341
BseJI GATNNNNATC 2 cut(s) 93, 333
BseLI CCNNNNNNNGG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 309, 763
BseXI GCAGC 3 cut(s) 166, 256, 376
BsgI GTGCAG 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 50
BsmI GAATGC 1 cut(s) 725
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 4 cut(s) 94, 175, 805, 834
BspACI CCGC 1 cut(s) 809
BspLI GGNNCC 1 cut(s) 454
BspPI GGATC 2 cut(s) 170, 800
BspT107I GGYRCC 1 cut(s) 452
BsrGI TGTACA 1 cut(s) 444
BsrI ACTGG 2 cut(s) 309, 763
BssMI GATC 4 cut(s) 94, 175, 805, 834
Bst2UI CCWGG 2 cut(s) 45, 180
Bst4CI ACNGT 3 cut(s) 26, 317, 738
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 146
BstC8I GCNNGC 6 cut(s) 471, 516, 561, 606, 651, 696
BstDEI CTNAG 2 cut(s) 267, 349
BstF5I GGATG 2 cut(s) 331, 341
BstKTI GATC 4 cut(s) 97, 178, 808, 837
BstMBI GATC 4 cut(s) 94, 175, 805, 834
BstNI CCWGG 2 cut(s) 45, 180
BstSCI CCNGG 2 cut(s) 43, 178
BstV1I GCAGC 3 cut(s) 166, 256, 376
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuI GTATCC 1 cut(s) 766
BtsCI GGATG 2 cut(s) 331, 341
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 6 cut(s) 471, 516, 561, 606, 651, 696
Csp6I GTAC 4 cut(s) 27, 192, 445, 453
CviAII CATG 3 cut(s) 383, 838, 844
CviQI GTAC 4 cut(s) 27, 192, 445, 453
DdeI CTNAG 2 cut(s) 267, 349
DpnI GATC 4 cut(s) 96, 177, 807, 836
DpnII GATC 4 cut(s) 94, 175, 805, 834
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 798
Eco57I CTGAAG 9 cut(s) 96, 252, 275, 442, 487, 532, 577, 622, 667
EcoRII CCWGG 2 cut(s) 43, 178
FaeI CATG 3 cut(s) 386, 841, 847
FatI CATG 3 cut(s) 382, 837, 843
FbaI TGATCA 1 cut(s) 834
Fnu4HI GCNGC 3 cut(s) 155, 245, 390
FokI GGATG 2 cut(s) 328, 338
Fsp4HI GCNGC 3 cut(s) 155, 245, 390
FspBI CTAG 2 cut(s) 767, 789
GluI GCNGC 3 cut(s) 155, 245, 390
HapII CCGG 1 cut(s) 59
Hin1II CATG 3 cut(s) 386, 841, 847
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 4 cut(s) 38, 169, 263, 426
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 3 cut(s) 194, 418, 445
Hpy188I TCNGA 9 cut(s) 12, 88, 461, 506, 551, 596, 641, 686, 731
Hpy188III TCNNGA 3 cut(s) 74, 173, 767
Hpy8I GTNNAC 3 cut(s) 194, 418, 445
HpyAV CCTTC 8 cut(s) 201, 400, 466, 511, 556, 601, 646, 691
HpyCH4III ACNGT 3 cut(s) 26, 317, 738
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 101, 154, 341, 392
HpyF3I CTNAG 2 cut(s) 267, 349
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 3 cut(s) 386, 841, 847
KpnI GGTACC 1 cut(s) 456
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 4 cut(s) 94, 175, 805, 834
LmnI GCTCC 2 cut(s) 227, 823
Lsp1109I GCAGC 3 cut(s) 166, 256, 376
LweI GCATC 2 cut(s) 141, 350
MaeI CTAG 2 cut(s) 767, 789
MaeII ACGT 1 cut(s) 145
MalI GATC 4 cut(s) 96, 177, 807, 836
MboI GATC 4 cut(s) 94, 175, 805, 834
MboII GAAGA 4 cut(s) 89, 130, 272, 281
MflI RGATCY 1 cut(s) 175
MluCI AATT 4 cut(s) 69, 82, 248, 793
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 2 cut(s) 742, 763
MslI CAYNNNNRTG 2 cut(s) 318, 842
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 45, 180
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 2 cut(s) 45, 180
NdeII GATC 4 cut(s) 94, 175, 805, 834
NlaIII CATG 3 cut(s) 386, 841, 847
NlaIV GGNNCC 1 cut(s) 454
PctI GAATGC 1 cut(s) 725
PfeI GAWTC 3 cut(s) 38, 169, 426
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 3 cut(s) 156, 246, 391
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 146
Psp6I CCWGG 2 cut(s) 43, 178
PspGI CCWGG 2 cut(s) 43, 178
PspN4I GGNNCC 1 cut(s) 454
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 4 cut(s) 28, 193, 446, 454
RsaNI GTAC 4 cut(s) 27, 192, 445, 453
RseI CAYNNNNRTG 2 cut(s) 318, 842
SatI GCNGC 3 cut(s) 155, 245, 390
Sau3AI GATC 4 cut(s) 94, 175, 805, 834
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 45, 180
SetI ASST 8 cut(s) 148, 159, 212, 232, 313, 355, 391, 458
SfaNI GCATC 2 cut(s) 141, 350
SmiMI CAYNNNNRTG 2 cut(s) 318, 842
Sse9I AATT 4 cut(s) 69, 82, 248, 793
SsiI CCGC 1 cut(s) 809
SspMI CTAG 2 cut(s) 767, 789
StyD4I CCNGG 2 cut(s) 43, 178
TaaI ACNGT 3 cut(s) 26, 317, 738
TaiI ACGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 429, 801
TasI AATT 4 cut(s) 69, 82, 248, 793
TatI WGTACW 3 cut(s) 26, 191, 444
TfiI GAWTC 3 cut(s) 38, 169, 426
TscAI CASTG 1 cut(s) 322
TseI GCWGC 3 cut(s) 154, 244, 389
TspDTI ATGAA 4 cut(s) 51, 386, 399, 832
TspRI CASTG 1 cut(s) 322
XapI RAATTY 2 cut(s) 69, 82
XbaI TCTAGA 1 cut(s) 766
XspI CTAG 2 cut(s) 767, 789
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.