Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001428

Physical Location & Seq

Genomic Coordinates Forward (+)

51679109 .. 51682768

Gene Structure 3660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00203150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCTTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATTGTGTAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATATGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGTGGGGAACGAGTCAAATTTGGTTTACACAGTCAATGATATTGATGAGATCCGAGCGGAATGGGCTGAGCATGTTTTGAAGTTCCCAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX UIM

Protein Analysis

173

Amino Acids

19.04

Weight (kDa)

4.43

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00752
fragaria_vesca	FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300
malus_domestica	MD01G1050500.v1.1
prunus_persica	Prupe.2G156600_v2.0.a1
pyrus_communis	pycom01g07530
rosa_chinensis	RchiOBHm_Chr1g0329331 RchiOBHm_Chr1g0352561 RchiOBHm_Chr3g0481331 RchiOBHm_Chr4g0427171
rosa_laevigata	RLG00000028330
rosa_multiflora	Rmu_sc0000147.1_g000024 Rmu_sc0000911.1_g000033 Rmu_sc0008564.1_g000023 Rmu_sc0008823.1_g000008 Rmu_sc0019045.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302630 Rroxscaffold_7G00169710 Rroxscaffold_7G00203150 Rroxscaffold_7G00213050
rosa_rugosa	Rorug01G0230100 Rorug04G0062700 Rorug04G0062800 Rorug04G0062900
rosa_samantha	Rh1AG202000 Rh1AG243600 Rh1BG214200 Rh1CG186900 Rh1CG226800 Rh1CG227100 Rh1DG240200 Rh2AG182200 Rh2DG188600 Rh3AG242000 Rh3DG289800 Rh4DG117700 Rh4DG164500 Rh6CG130000 Rh6CG255900 Rh7DG285300 Rh7DG364500
rosa_wichuraiana	Rw0G009430 Rw1G017790 Rw1G021300 Rw3G029580 Rw4G002460 Rw4G019570 Rw6G016170 Rw7G038890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	482
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	2 cut(s)	212, 469
AcsI	RAATTY	3 cut(s)	111, 124, 442
AcuI	CTGAAG	3 cut(s)	138, 294, 317
AfaI	GTAC	2 cut(s)	70, 235
AgsI	TTSAA	5 cut(s)	8, 20, 27, 160, 505
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	7 cut(s)	11, 23, 38, 199, 272, 375, 391
AluI	AGCT	7 cut(s)	11, 23, 38, 199, 272, 375, 391
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	212, 469
ApeKI	GCWGC	3 cut(s)	11, 196, 286
ApoI	RAATTY	3 cut(s)	111, 124, 442
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	208, 298
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	407
BisI	GCNGC	3 cut(s)	12, 197, 287
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	3 cut(s)	13, 198, 288
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse1I	ACTGG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	208, 298
BsgI	GTGCAG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	217, 474
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	1 cut(s)	482
BspCNI	CTCAG	1 cut(s)	484
BspPI	GGATC	2 cut(s)	212, 469
BsrBI	CCGCTC	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	351
BssMI	GATC	2 cut(s)	217, 474
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	68, 359, 457
Bst6I	CTCTTC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	309, 492
BstKTI	GATC	2 cut(s)	220, 477
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	2 cut(s)	217, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 488
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	208, 298
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	217, 474
BstYI	RGATCY	2 cut(s)	217, 474
BtsIMutI	CAGTG	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	69, 234
CviAII	CATG	2 cut(s)	237, 497
CviJI	RGCY	9 cut(s)	11, 23, 38, 97, 199, 272, 375, 391, 491
CviKI_1	RGCY	9 cut(s)	11, 23, 38, 97, 199, 272, 375, 391, 491
CviQI	GTAC	2 cut(s)	69, 234
DdeI	CTNAG	2 cut(s)	309, 492
DpnI	GATC	2 cut(s)	219, 476
DpnII	GATC	2 cut(s)	217, 474
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco57I	CTGAAG	3 cut(s)	138, 294, 317
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	240, 500
FaiI	YATR	5 cut(s)	187, 231, 238, 407, 498
FatI	CATG	2 cut(s)	236, 496
Fnu4HI	GCNGC	3 cut(s)	12, 197, 287
Fsp4HI	GCNGC	3 cut(s)	12, 197, 287
GluI	GCNGC	3 cut(s)	12, 197, 287
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	240, 500
HindIII	AAGCTT	2 cut(s)	21, 373
HinfI	GANTC	4 cut(s)	4, 211, 305, 437
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	3 cut(s)	54, 130, 479
Hpy188III	TCNNGA	2 cut(s)	116, 215
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	3 cut(s)	68, 359, 457
HpyCH4V	TGCA	3 cut(s)	61, 196, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 488
HpyF3I	CTNAG	2 cut(s)	309, 492
Hsp92II	CATG	2 cut(s)	240, 500
Kzo9I	GATC	2 cut(s)	217, 474
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	7 cut(s)	114, 129, 193, 207, 234, 323, 332
Lsp1109I	GCAGC	2 cut(s)	208, 298
LweI	GCATC	1 cut(s)	183
MalI	GATC	2 cut(s)	219, 476
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	2 cut(s)	217, 474
MboII	GAAGA	4 cut(s)	131, 172, 314, 323
MflI	RGATCY	2 cut(s)	217, 474
MluCI	AATT	6 cut(s)	111, 124, 290, 402, 442, 517
MlyI	GAGTC	2 cut(s)	314, 446
MseI	TTAA	1 cut(s)	520
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	20, 488
NdeII	GATC	2 cut(s)	217, 474
NlaIII	CATG	2 cut(s)	240, 500
NspI	RCATGY	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	4, 211
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	13, 198, 288
PleI	GAGTC	2 cut(s)	313, 445
PpsI	GAGTC	2 cut(s)	313, 445
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	217, 474
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	70, 235
RsaNI	GTAC	2 cut(s)	69, 234
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	3 cut(s)	12, 197, 287
Sau3AI	GATC	2 cut(s)	217, 474
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	2 cut(s)	314, 446
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	8 cut(s)	13, 25, 40, 201, 254, 274, 377, 393
SfaNI	GCATC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	6 cut(s)	111, 124, 290, 402, 442, 517
SsiI	CCGC	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	68, 359, 457
TasI	AATT	6 cut(s)	111, 124, 290, 402, 442, 517
TatI	WGTACW	2 cut(s)	68, 233
TfiI	GAWTC	2 cut(s)	4, 211
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	3 cut(s)	11, 196, 286
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	3 cut(s)	111, 124, 442
XceI	RCATGY	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.