Rh1AG202000

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001428
Physical Location & Seq
Reverse (-)
38318225 .. 38341567
23343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG202000.1

Sequence Viewer

Length: 774 bp
ATGCGCGGAGAACATGGAGGCGATCTCAATGAAGCCGTGAATGCACATTTTAGGGAAGGAGATGTACACAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGTGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCCAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGTAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCTAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATTTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGTGGGGAACGAGGTCAAATTTGGTTTACACAGTCAATGATATTGATGAGATCCGAGCGGAATGGGCTGAGCATGTTTTGAAGTTCCCAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

257

Amino Acids

28.43

Weight (kDa)

4.96

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 734
AccII CGCG 1 cut(s) 6
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 2 cut(s) 6, 734
AclWI GGATC 1 cut(s) 721
AcsI RAATTY 3 cut(s) 423, 436, 694
AcuI CTGAAG 2 cut(s) 450, 606
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 3 cut(s) 66, 382, 547
AfiI CCNNNNNNNGG 2 cut(s) 178, 404
AgsI TTSAA 6 cut(s) 79, 205, 320, 332, 472, 757
AjnI CCWGG 2 cut(s) 172, 397
AluBI AGCT 5 cut(s) 323, 335, 350, 511, 584
AluI AGCT 5 cut(s) 323, 335, 350, 511, 584
Alw21I GWGCWC 1 cut(s) 157
Alw44I GTGCAC 1 cut(s) 153
AlwI GGATC 1 cut(s) 721
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 1 cut(s) 242
ApaLI GTGCAC 1 cut(s) 153
ApeKI GCWGC 4 cut(s) 220, 323, 508, 598
ApoI RAATTY 3 cut(s) 423, 436, 694
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 157
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 4 cut(s) 232, 310, 520, 610
BccI CCATC 2 cut(s) 166, 623
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 2 cut(s) 174, 399
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 195
BglII AGATCT 2 cut(s) 115, 529
BisI GCNGC 4 cut(s) 221, 324, 509, 599
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 4 cut(s) 222, 325, 510, 600
BmcAI AGTACT 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 174, 399
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 174, 399
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 495
BmuI ACTGGG 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 479
BplI GAGNNNNNCTC 2 cut(s) 9, 41
Bpu1102I GCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 172
BsaWI WCCGGW 2 cut(s) 253, 412
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 404
Bse1I ACTGG 3 cut(s) 151, 190, 663
Bse3DI GCAATG 2 cut(s) 220, 301
Bse8I GATNNNNATC 1 cut(s) 447
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 2 cut(s) 174, 399
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 178, 404
BseMI GCAATG 2 cut(s) 220, 301
BseMII CTCAG 2 cut(s) 246, 735
BseNI ACTGG 3 cut(s) 151, 190, 663
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 4 cut(s) 232, 310, 520, 610
BseYI CCCAGC 1 cut(s) 763
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 2 cut(s) 254, 413
BslI CCNNNNNNNGG 2 cut(s) 178, 404
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 157
Bsp13I TCCGGA 1 cut(s) 253
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 5 cut(s) 22, 115, 448, 529, 726
Bsp1720I GCTNAGC 1 cut(s) 744
BspACI CCGC 2 cut(s) 6, 734
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 245, 736
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 721
BsrBI CCGCTC 1 cut(s) 734
BsrDI GCAATG 2 cut(s) 220, 301
BsrGI TGTACA 1 cut(s) 64
BsrI ACTGG 3 cut(s) 151, 190, 663
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 5 cut(s) 22, 115, 448, 529, 726
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 174, 399
Bst4CI ACNGT 6 cut(s) 101, 110, 380, 478, 671, 709
Bst6I CTCTTC 1 cut(s) 609
BstACI GRCGYC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 3 cut(s) 232, 621, 744
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 5 cut(s) 25, 118, 451, 532, 729
BstMBI GATC 5 cut(s) 22, 115, 448, 529, 726
BstMWI GCNNNNNNNGC 3 cut(s) 41, 332, 740
BstNI CCWGG 2 cut(s) 174, 399
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 2 cut(s) 172, 397
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 157
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 4 cut(s) 232, 310, 520, 610
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 3 cut(s) 115, 529, 726
BstYI RGATCY 3 cut(s) 115, 529, 726
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 676
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 6
CseI GACGC 1 cut(s) 287
Csp6I GTAC 3 cut(s) 65, 381, 546
CviAII CATG 3 cut(s) 14, 549, 749
CviQI GTAC 3 cut(s) 65, 381, 546
DdeI CTNAG 3 cut(s) 232, 621, 744
DpnI GATC 5 cut(s) 24, 117, 450, 531, 728
DpnII GATC 5 cut(s) 22, 115, 448, 529, 726
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco147I AGGCCT 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 450, 606
EcoRII CCWGG 2 cut(s) 172, 397
FaeI CATG 3 cut(s) 17, 552, 752
FaiI YATR 5 cut(s) 15, 291, 543, 550, 750
FatI CATG 3 cut(s) 13, 548, 748
Fnu4HI GCNGC 4 cut(s) 221, 324, 509, 599
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 221, 324, 509, 599
FspBI CTAG 1 cut(s) 533
GlaI GCGC 1 cut(s) 5
GluI GCNGC 4 cut(s) 221, 324, 509, 599
GsaI CCCAGC 1 cut(s) 767
HaeIII GGCC 1 cut(s) 244
HapII CCGG 2 cut(s) 254, 413
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 3 cut(s) 17, 552, 752
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 333
HinfI GANTC 3 cut(s) 316, 523, 617
HpaII CCGG 2 cut(s) 254, 413
HphI GGTGA 1 cut(s) 153
Hpy166II GTNNAC 3 cut(s) 67, 155, 703
Hpy188I TCNGA 4 cut(s) 129, 366, 442, 731
Hpy188III TCNNGA 5 cut(s) 234, 254, 285, 428, 527
Hpy8I GTNNAC 3 cut(s) 67, 155, 703
HpyAV CCTTC 4 cut(s) 50, 93, 174, 555
HpyCH4III ACNGT 6 cut(s) 101, 110, 380, 478, 671, 709
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 6 cut(s) 44, 140, 155, 373, 455, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 332, 740
HpyF3I CTNAG 3 cut(s) 232, 621, 744
HpySE526I ACGT 1 cut(s) 499
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 3 cut(s) 17, 552, 752
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 22, 115, 448, 529, 726
LmnI GCTCC 1 cut(s) 581
Lsp1109I GCAGC 4 cut(s) 232, 310, 520, 610
LweI GCATC 1 cut(s) 495
MaeI CTAG 1 cut(s) 533
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 2 cut(s) 104, 181
MalI GATC 5 cut(s) 24, 117, 450, 531, 728
MbiI CCGCTC 1 cut(s) 734
MboI GATC 5 cut(s) 22, 115, 448, 529, 726
MboII GAAGA 4 cut(s) 320, 443, 484, 626
MflI RGATCY 3 cut(s) 115, 529, 726
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 6 cut(s) 249, 423, 436, 602, 694, 769
MlyI GAGTC 1 cut(s) 626
MnlI CCTC 6 cut(s) 11, 172, 234, 292, 298, 681
MroI TCCGGA 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 2 cut(s) 143, 772
MslI CAYNNNNRTG 1 cut(s) 672
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 2 cut(s) 254, 413
MspR9I CCNGG 2 cut(s) 174, 399
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 2 cut(s) 174, 399
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 3 cut(s) 41, 332, 740
NdeII GATC 5 cut(s) 22, 115, 448, 529, 726
NlaIII CATG 3 cut(s) 17, 552, 752
NlaIV GGNNCC 1 cut(s) 192
NspI RCATGY 1 cut(s) 752
PceI AGGCCT 1 cut(s) 244
PctI GAATGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 316, 523
PkrI GCNGC 4 cut(s) 222, 325, 510, 600
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
Ppu21I YACGTR 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 172, 397
PspFI CCCAGC 1 cut(s) 763
PspGI CCWGG 2 cut(s) 172, 397
PspN4I GGNNCC 1 cut(s) 192
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PsuI RGATCY 3 cut(s) 115, 529, 726
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 3 cut(s) 66, 382, 547
RsaNI GTAC 3 cut(s) 65, 381, 546
RseI CAYNNNNRTG 1 cut(s) 672
SaqAI TTAA 2 cut(s) 143, 772
SatI GCNGC 4 cut(s) 221, 324, 509, 599
Sau3AI GATC 5 cut(s) 22, 115, 448, 529, 726
ScaI AGTACT 1 cut(s) 382
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 2 cut(s) 174, 399
SduI GDGCHC 1 cut(s) 157
SfaNI GCATC 1 cut(s) 495
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 6 cut(s) 249, 423, 436, 602, 694, 769
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 2 cut(s) 6, 734
SspMI CTAG 1 cut(s) 533
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 172, 397
TaaI ACNGT 6 cut(s) 101, 110, 380, 478, 671, 709
TaiI ACGT 1 cut(s) 502
TasI AATT 6 cut(s) 249, 423, 436, 602, 694, 769
TatI WGTACW 3 cut(s) 64, 380, 545
TfiI GAWTC 2 cut(s) 316, 523
Tru1I TTAA 2 cut(s) 143, 772
Tru9I TTAA 2 cut(s) 143, 772
TscAI CASTG 1 cut(s) 676
TseI GCWGC 4 cut(s) 220, 323, 508, 598
TspDTI ATGAA 2 cut(s) 45, 75
TspRI CASTG 1 cut(s) 676
VneI GTGCAC 1 cut(s) 153
XapI RAATTY 3 cut(s) 423, 436, 694
XceI RCATGY 1 cut(s) 752
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 533
ZrmI AGTACT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.