Rh2DG188600

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001428
Physical Location & Seq
Reverse (-)
16875675 .. 16916912
41238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG188600.1

Sequence Viewer

Length: 1158 bp
ATGAAAATCACTTTCCCATCCTTGTATCCAAGGAACTTCTCTAGAGATACTCAGTTGCCACTTGTTTTTAATGGCTGTCAAAGTGTGATGGAACTGAAGAAACTCAAAGGCAAGATTGTTGTTTGCAAAGACAATATGAGCATAGATGTTCAAGTTGAGAATGCAAAGTCTGCAAAGTTTTCATGTGCTTTGACCTGGGTTTTCTCATTCAGGACCTTCGATCTCTTCTCCAACAAGCTGCGACAGCTCAGATACACTTTTACAAGTCCTTCATCTACTGCTCCCCCACAGTACAATTTCCCTCAAATGAGTAATCAGAATCAAGTAGCTCTACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGAGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAGGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAAGAATCAAGATCCAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGGCTGCTGAGGAGGCTTCAGAGATTGATAAGCTGTTTGCGCTTCCCAAACGAGATTCAAAATTTTCAAAAGACAAGGGGAAGAAGAAGGGCAATTCAAGAATCATCTTATTCAAGCACAAGAGGTCCTTATTGCTTTTTAGTCGCAGAATTGCAAAGCAGCGCCAAATACATGTAGTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

385

Amino Acids

42.97

Weight (kDa)

9.21

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 451
AccIII TCCGGA 1 cut(s) 550
AclWI GGATC 1 cut(s) 821
AcsI RAATTY 3 cut(s) 720, 733, 1034
AcuI CTGAAG 5 cut(s) 116, 747, 903, 926, 975
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 3 cut(s) 293, 679, 844
AfiI CCNNNNNNNGG 2 cut(s) 475, 701
AflIII ACRYGT 1 cut(s) 1144
AjnI CCWGG 5 cut(s) 194, 365, 469, 694, 829
AluBI AGCT 9 cut(s) 238, 247, 329, 620, 632, 647, 808, 881, 1006
AluI AGCT 9 cut(s) 238, 247, 329, 620, 632, 647, 808, 881, 1006
AlwI GGATC 1 cut(s) 821
AlwNI CAGNNNCTG 1 cut(s) 566
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 1 cut(s) 539
ApeKI GCWGC 7 cut(s) 238, 517, 620, 805, 895, 977, 1132
ApoI RAATTY 3 cut(s) 720, 733, 1034
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 2 cut(s) 1015, 1137
AspS9I GGNCC 2 cut(s) 213, 1098
AsuHPI GGTGA 1 cut(s) 450
AvaII GGWCC 2 cut(s) 213, 1098
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 776
BbvCI CCTCAGC 1 cut(s) 981
BbvI GCAGC 7 cut(s) 225, 529, 607, 817, 907, 964, 1144
BccI CCATC 4 cut(s) 25, 82, 463, 920
BciT130I CCWGG 5 cut(s) 196, 367, 471, 696, 831
BciVI GTATCC 1 cut(s) 36
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 1138
BfuI GTATCC 1 cut(s) 36
BglII AGATCT 1 cut(s) 412
BisI GCNGC 7 cut(s) 239, 518, 621, 806, 896, 978, 1133
BlsI GCNGC 7 cut(s) 240, 519, 622, 807, 897, 979, 1134
BmcAI AGTACT 1 cut(s) 679
Bme1390I CCNGG 5 cut(s) 196, 367, 471, 696, 831
Bme18I GGWCC 2 cut(s) 213, 1098
BmgT120I GGNCC 2 cut(s) 213, 1098
BmiI GGNNCC 2 cut(s) 453, 489
BmrFI CCNGG 5 cut(s) 196, 367, 471, 696, 831
BmsI GCATC 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 776
Bpu10I CCTNAGC 1 cut(s) 981
BpuEI CTTGAG 1 cut(s) 565
BsaAI YACGTR 1 cut(s) 797
BsaBI GATNNNNATC 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 576
BsaJI CCNNGG 3 cut(s) 29, 195, 469
BsaWI WCCGGW 2 cut(s) 550, 709
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 701
Bse1I ACTGG 2 cut(s) 448, 960
Bse3DI GCAATG 2 cut(s) 517, 598
Bse8I GATNNNNATC 1 cut(s) 744
BseAI TCCGGA 1 cut(s) 550
BseBI CCWGG 5 cut(s) 196, 367, 471, 696, 831
BseDI CCNNGG 3 cut(s) 29, 195, 469
BseGI GGATG 2 cut(s) 17, 559
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 2 cut(s) 475, 701
BseMI GCAATG 2 cut(s) 517, 598
BseMII CTCAG 5 cut(s) 65, 262, 474, 543, 972
BseNI ACTGG 2 cut(s) 448, 960
BseRI GAGGAG 1 cut(s) 998
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 7 cut(s) 225, 529, 607, 817, 907, 964, 1144
BsgI GTGCAG 1 cut(s) 771
BshFI GGCC 1 cut(s) 541
BshNI GGYRCC 1 cut(s) 451
BsiSI CCGG 2 cut(s) 551, 710
BslI CCNNNNNNNGG 2 cut(s) 475, 701
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 454
Bsp13I TCCGGA 1 cut(s) 550
Bsp143I GATC 4 cut(s) 220, 412, 745, 826
BspANI GGCC 1 cut(s) 541
BspCNI CTCAG 5 cut(s) 64, 261, 475, 542, 973
BspEI TCCGGA 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 453, 489
BspPI GGATC 1 cut(s) 821
BspT107I GGYRCC 1 cut(s) 451
BsrDI GCAATG 2 cut(s) 517, 598
BsrI ACTGG 2 cut(s) 448, 960
BssECI CCNNGG 3 cut(s) 29, 195, 469
BssMI GATC 4 cut(s) 220, 412, 745, 826
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 5 cut(s) 196, 367, 471, 696, 831
Bst4CI ACNGT 5 cut(s) 291, 398, 407, 677, 968
Bst6I CTCTTC 2 cut(s) 230, 906
BstACI GRCGYC 1 cut(s) 576
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 797
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 6 cut(s) 51, 248, 483, 529, 918, 981
BstF5I GGATG 2 cut(s) 17, 559
BstH2I RGCGCY 1 cut(s) 1138
BstHHI GCGC 2 cut(s) 1015, 1137
BstKTI GATC 4 cut(s) 223, 415, 748, 829
BstMBI GATC 4 cut(s) 220, 412, 745, 826
BstMWI GCNNNNNNNGC 5 cut(s) 170, 244, 629, 986, 1012
BstNI CCWGG 5 cut(s) 196, 367, 471, 696, 831
BstNSI RCATGY 1 cut(s) 1148
BstSCI CCNGG 5 cut(s) 194, 365, 469, 694, 829
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 454
BstV1I GCAGC 7 cut(s) 225, 529, 607, 817, 907, 964, 1144
BstV2I GAAGAC 1 cut(s) 776
BstX2I RGATCY 2 cut(s) 412, 826
BstYI RGATCY 2 cut(s) 412, 826
BsuI GTATCC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 541
BtsCI GGATG 2 cut(s) 17, 559
BtsIMutI CAGTG 1 cut(s) 973
Cac8I GCNNGC 1 cut(s) 508
CaiI CAGNNNCTG 1 cut(s) 566
CfoI GCGC 2 cut(s) 1015, 1137
Cfr13I GGNCC 2 cut(s) 213, 1098
CseI GACGC 1 cut(s) 584
Csp6I GTAC 3 cut(s) 292, 678, 843
CviAII CATG 3 cut(s) 183, 846, 1145
CviQI GTAC 3 cut(s) 292, 678, 843
DdeI CTNAG 6 cut(s) 51, 248, 483, 529, 918, 981
DpnI GATC 4 cut(s) 222, 414, 747, 828
DpnII GATC 4 cut(s) 220, 412, 745, 826
Eam1104I CTCTTC 2 cut(s) 230, 906
EarI CTCTTC 2 cut(s) 230, 906
Eco130I CCWWGG 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 213, 1098
Eco57I CTGAAG 5 cut(s) 116, 747, 903, 926, 975
EcoO109I RGGNCCY 2 cut(s) 213, 1098
EcoRII CCWGG 5 cut(s) 194, 365, 469, 694, 829
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 3 cut(s) 186, 849, 1148
FaiI YATR 7 cut(s) 137, 143, 184, 588, 840, 847, 1146
FalI AAGNNNNNCTT 2 cut(s) 1085, 1117
FatI CATG 3 cut(s) 182, 845, 1144
Fnu4HI GCNGC 7 cut(s) 239, 518, 621, 806, 896, 978, 1133
FokI GGATG 2 cut(s) 4, 566
Fsp4HI GCNGC 7 cut(s) 239, 518, 621, 806, 896, 978, 1133
FspBI CTAG 1 cut(s) 42
GlaI GCGC 2 cut(s) 1014, 1136
GluI GCNGC 7 cut(s) 239, 518, 621, 806, 896, 978, 1133
HaeII RGCGCY 1 cut(s) 1138
HaeIII GGCC 1 cut(s) 541
HapII CCGG 2 cut(s) 551, 710
HgaI GACGC 1 cut(s) 584
HhaI GCGC 2 cut(s) 1015, 1137
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 3 cut(s) 186, 849, 1148
Hin6I GCGC 2 cut(s) 1013, 1135
HinP1I GCGC 2 cut(s) 1013, 1135
HindIII AAGCTT 1 cut(s) 630
HinfI GANTC 6 cut(s) 319, 613, 820, 914, 1028, 1074
HpaII CCGG 2 cut(s) 551, 710
HphI GGTGA 1 cut(s) 450
Hpy188I TCNGA 6 cut(s) 251, 318, 426, 663, 739, 994
Hpy188III TCNNGA 8 cut(s) 42, 211, 531, 551, 582, 725, 824, 1071
HpyAV CCTTC 6 cut(s) 226, 279, 390, 471, 852, 1054
HpyCH4III ACNGT 5 cut(s) 291, 398, 407, 677, 968
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 8 cut(s) 126, 164, 173, 437, 670, 752, 805, 1127
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 244, 629, 986, 1012
HpyF3I CTNAG 6 cut(s) 51, 248, 483, 529, 918, 981
HpySE526I ACGT 1 cut(s) 796
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 3 cut(s) 186, 849, 1148
HspAI GCGC 2 cut(s) 1013, 1135
Kpn2I TCCGGA 1 cut(s) 550
Kzo9I GATC 4 cut(s) 220, 412, 745, 826
LmnI GCTCC 2 cut(s) 286, 878
Lsp1109I GCAGC 7 cut(s) 225, 529, 607, 817, 907, 964, 1144
LweI GCATC 1 cut(s) 792
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 2 cut(s) 401, 478
MalI GATC 4 cut(s) 222, 414, 747, 828
MboI GATC 4 cut(s) 220, 412, 745, 826
MboII GAAGA 9 cut(s) 109, 217, 617, 740, 781, 923, 932, 1066, 1069
MflI RGATCY 2 cut(s) 412, 826
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 8 cut(s) 295, 546, 720, 733, 899, 1034, 1066, 1122
MlyI GAGTC 1 cut(s) 923
MmeI TCCRAC 1 cut(s) 255
MroI TCCGGA 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 612
MseI TTAA 2 cut(s) 69, 440
MslI CAYNNNNRTG 1 cut(s) 969
MspA1I CMGCKG 1 cut(s) 808
MspI CCGG 2 cut(s) 551, 710
MspR9I CCNGG 5 cut(s) 196, 367, 471, 696, 831
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 5 cut(s) 196, 367, 471, 696, 831
MwoI GCNNNNNNNGC 5 cut(s) 170, 244, 629, 986, 1012
NdeII GATC 4 cut(s) 220, 412, 745, 826
NlaIII CATG 3 cut(s) 186, 849, 1148
NlaIV GGNNCC 2 cut(s) 453, 489
NspI RCATGY 1 cut(s) 1148
PceI AGGCCT 1 cut(s) 541
PciI ACATGT 1 cut(s) 1144
PctI GAATGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 5 cut(s) 319, 613, 820, 1028, 1074
PfoI TCCNGGA 1 cut(s) 829
PkrI GCNGC 7 cut(s) 240, 519, 622, 807, 897, 979, 1134
PleI GAGTC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 922
Ppu21I YACGTR 1 cut(s) 797
PpuMI RGGWCCY 2 cut(s) 213, 1098
PscI ACATGT 1 cut(s) 1144
Psp5II RGGWCCY 2 cut(s) 213, 1098
Psp6I CCWGG 5 cut(s) 194, 365, 469, 694, 829
PspGI CCWGG 5 cut(s) 194, 365, 469, 694, 829
PspN4I GGNNCC 2 cut(s) 453, 489
PspPI GGNCC 2 cut(s) 213, 1098
PspPPI RGGWCCY 2 cut(s) 213, 1098
PsrI GAACNNNNNNTAC 2 cut(s) 471, 503
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 2 cut(s) 412, 826
PvuII CAGCTG 1 cut(s) 808
RsaI GTAC 3 cut(s) 293, 679, 844
RsaNI GTAC 3 cut(s) 292, 678, 843
RseI CAYNNNNRTG 1 cut(s) 969
SaqAI TTAA 2 cut(s) 69, 440
SatI GCNGC 7 cut(s) 239, 518, 621, 806, 896, 978, 1133
Sau3AI GATC 4 cut(s) 220, 412, 745, 826
Sau96I GGNCC 2 cut(s) 213, 1098
ScaI AGTACT 1 cut(s) 679
SchI GAGTC 1 cut(s) 923
ScrFI CCNGG 5 cut(s) 196, 367, 471, 696, 831
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 1 cut(s) 792
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 2 cut(s) 213, 1098
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
Sse9I AATT 8 cut(s) 295, 546, 720, 733, 899, 1034, 1066, 1122
SseBI AGGCCT 1 cut(s) 541
SspMI CTAG 1 cut(s) 42
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 5 cut(s) 194, 365, 469, 694, 829
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 5 cut(s) 291, 398, 407, 677, 968
TaiI ACGT 1 cut(s) 799
TaqI TCGA 1 cut(s) 219
TasI AATT 8 cut(s) 295, 546, 720, 733, 899, 1034, 1066, 1122
TatI WGTACW 3 cut(s) 291, 677, 842
TfiI GAWTC 5 cut(s) 319, 613, 820, 1028, 1074
Tru1I TTAA 2 cut(s) 69, 440
Tru9I TTAA 2 cut(s) 69, 440
TscAI CASTG 1 cut(s) 973
TseI GCWGC 7 cut(s) 238, 517, 620, 805, 895, 977, 1132
TspDTI ATGAA 4 cut(s) 17, 171, 261, 372
TspRI CASTG 1 cut(s) 973
VpaK11BI GGWCC 2 cut(s) 213, 1098
XapI RAATTY 3 cut(s) 720, 733, 1034
XbaI TCTAGA 1 cut(s) 41
XceI RCATGY 1 cut(s) 1148
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.