Rh6CG255900

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001428
Physical Location & Seq
Reverse (-)
42734783 .. 42743925
9143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG255900.1

Sequence Viewer

Length: 822 bp
ATGAACAATCAAGGTCATTTGCTAAATTTGAAGCTTCAAAATGAGAAGCTGAAATGGGGTTCTCCGAATGTGCGAAACAGTACTCCCAATGAATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACACGGAAGGAATTAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGTAGCTCACAGTGATGTGACTAGTCAATTTTATCACATATATACTTGTAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACCTAATAATCTGCCTATACATGCCTCTTCCTCATCCTCTCTGTCAGCAAGGCAATTGCTCAGAGAACAACAGGATGATGAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAACGAAAGAATCGAGCCAATGGAATTTGAGAGAAGGCTAGATGCAAAAAGTGCTTCACTTCCTTGTGAACCAGCACCAGATGATGAGAATGCTGTGACTCTTCTTGTTCGGATGCCAAATGGCAGCCGCCTTAGCCGTCACTTTCGCAAATCTGACAGGCTTCAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

273

Amino Acids

30.95

Weight (kDa)

6.08

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 778
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 4 cut(s) 25, 123, 136, 674
AcuI CTGAAG 4 cut(s) 150, 306, 329, 797
AfaI GTAC 2 cut(s) 82, 247
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 4 cut(s) 31, 38, 172, 640
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 2 cut(s) 97, 232
AluBI AGCT 9 cut(s) 34, 49, 211, 284, 365, 419, 435, 587, 623
AluI AGCT 9 cut(s) 34, 49, 211, 284, 365, 419, 435, 587, 623
Alw26I GTCTC 1 cut(s) 451
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 4 cut(s) 208, 298, 623, 774
ApoI RAATTY 4 cut(s) 25, 123, 136, 674
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 220, 310, 610, 786
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 771
BciT130I CCWGG 2 cut(s) 99, 234
BcoDI GTCTC 1 cut(s) 451
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 2 cut(s) 381, 689
BisI GCNGC 5 cut(s) 209, 299, 624, 775, 778
BlsI GCNGC 5 cut(s) 210, 300, 625, 776, 779
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 99, 234
BmrFI CCNGG 2 cut(s) 99, 234
BmsI GCATC 4 cut(s) 195, 584, 682, 753
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 475
BsaAI YACGTR 1 cut(s) 200
BsaBI GATNNNNATC 2 cut(s) 147, 567
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 363
Bse8I GATNNNNATC 2 cut(s) 147, 567
BseBI CCWGG 2 cut(s) 99, 234
BseGI GGATG 4 cut(s) 518, 565, 575, 768
BseJI GATNNNNATC 2 cut(s) 147, 567
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 559
BseNI ACTGG 1 cut(s) 363
BseXI GCAGC 4 cut(s) 220, 310, 610, 786
BsgI GTGCAG 2 cut(s) 174, 446
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 451
BsmI GAATGC 1 cut(s) 745
Bsp143I GATC 2 cut(s) 148, 229
BspACI CCGC 1 cut(s) 778
BspCNI CTCAG 1 cut(s) 558
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 363
BssMI GATC 2 cut(s) 148, 229
Bst2UI CCWGG 2 cut(s) 99, 234
Bst4CI ACNGT 2 cut(s) 80, 371
Bst6I CTCTTC 3 cut(s) 309, 517, 756
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBAI YACGTR 1 cut(s) 200
BstDEI CTNAG 4 cut(s) 321, 545, 583, 782
BstF5I GGATG 4 cut(s) 518, 565, 575, 768
BstKTI GATC 2 cut(s) 151, 232
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 2 cut(s) 148, 229
BstMWI GCNNNNNNNGC 2 cut(s) 701, 783
BstNI CCWGG 2 cut(s) 99, 234
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 2 cut(s) 97, 232
BstV1I GCAGC 4 cut(s) 220, 310, 610, 786
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtsCI GGATG 4 cut(s) 518, 565, 575, 768
BtsIMutI CAGTG 1 cut(s) 376
Csp6I GTAC 2 cut(s) 81, 246
CviAII CATG 2 cut(s) 506, 617
CviQI GTAC 2 cut(s) 81, 246
DdeI CTNAG 4 cut(s) 321, 545, 583, 782
DpnI GATC 2 cut(s) 150, 231
DpnII GATC 2 cut(s) 148, 229
Eam1104I CTCTTC 3 cut(s) 309, 517, 756
EarI CTCTTC 3 cut(s) 309, 517, 756
Eco57I CTGAAG 4 cut(s) 150, 306, 329, 797
EcoRII CCWGG 2 cut(s) 97, 232
FaeI CATG 2 cut(s) 509, 620
FatI CATG 2 cut(s) 505, 616
Fnu4HI GCNGC 5 cut(s) 209, 299, 624, 775, 778
FokI GGATG 4 cut(s) 505, 562, 572, 775
Fsp4HI GCNGC 5 cut(s) 209, 299, 624, 775, 778
FspBI CTAG 2 cut(s) 381, 689
GluI GCNGC 5 cut(s) 209, 299, 624, 775, 778
HapII CCGG 1 cut(s) 113
Hin1II CATG 2 cut(s) 509, 620
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 2 cut(s) 32, 417
HinfI GANTC 5 cut(s) 92, 223, 317, 660, 748
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 3 cut(s) 248, 652, 719
Hpy188I TCNGA 5 cut(s) 66, 142, 548, 762, 805
Hpy188III TCNNGA 2 cut(s) 128, 227
Hpy8I GTNNAC 3 cut(s) 248, 652, 719
HpyAV CCTTC 3 cut(s) 247, 634, 678
HpyCH4III ACNGT 2 cut(s) 80, 371
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 6 cut(s) 155, 208, 463, 575, 626, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 701, 783
HpyF3I CTNAG 4 cut(s) 321, 545, 583, 782
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 509, 620
Kzo9I GATC 2 cut(s) 148, 229
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 4 cut(s) 220, 310, 610, 786
LweI GCATC 4 cut(s) 195, 584, 682, 753
MaeI CTAG 2 cut(s) 381, 689
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 3 cut(s) 376, 745, 788
MalI GATC 2 cut(s) 150, 231
MboI GATC 2 cut(s) 148, 229
MboII GAAGA 6 cut(s) 143, 184, 326, 335, 504, 743
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 1 cut(s) 229
MluCI AATT 9 cut(s) 25, 123, 136, 257, 302, 386, 446, 539, 674
MlyI GAGTC 2 cut(s) 326, 742
MnlI CCTC 3 cut(s) 520, 526, 532
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 99, 234
MunI CAATTG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 2 cut(s) 99, 234
MwoI GCNNNNNNNGC 2 cut(s) 701, 783
NdeII GATC 2 cut(s) 148, 229
NlaIII CATG 2 cut(s) 509, 620
NmuCI GTSAC 3 cut(s) 376, 745, 788
NspI RCATGY 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PctI GAATGC 1 cut(s) 745
PfeI GAWTC 3 cut(s) 92, 223, 660
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 5 cut(s) 210, 300, 625, 776, 779
PleI GAGTC 2 cut(s) 325, 742
PpsI GAGTC 2 cut(s) 325, 742
Ppu21I YACGTR 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 97, 232
PspGI CCWGG 2 cut(s) 97, 232
PsuI RGATCY 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 2 cut(s) 82, 247
RsaNI GTAC 2 cut(s) 81, 246
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 5 cut(s) 209, 299, 624, 775, 778
Sau3AI GATC 2 cut(s) 148, 229
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 2 cut(s) 326, 742
ScrFI CCNGG 2 cut(s) 99, 234
SfaNI GCATC 4 cut(s) 195, 584, 682, 753
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 9 cut(s) 25, 123, 136, 257, 302, 386, 446, 539, 674
SsiI CCGC 1 cut(s) 778
SspMI CTAG 2 cut(s) 381, 689
StyD4I CCNGG 2 cut(s) 97, 232
TaaI ACNGT 2 cut(s) 80, 371
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 663
TasI AATT 9 cut(s) 25, 123, 136, 257, 302, 386, 446, 539, 674
TatI WGTACW 2 cut(s) 80, 245
TauI GCSGC 1 cut(s) 780
TfiI GAWTC 3 cut(s) 92, 223, 660
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 3 cut(s) 376, 745, 788
TseI GCWGC 4 cut(s) 208, 298, 623, 774
Tsp45I GTSAC 3 cut(s) 376, 745, 788
TspDTI ATGAA 4 cut(s) 17, 105, 620, 633
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 376
XapI RAATTY 4 cut(s) 25, 123, 136, 674
XceI RCATGY 1 cut(s) 509
XspI CTAG 2 cut(s) 381, 689
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.