Rroxscaffold_7G00213050

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001428
Physical Location & Seq
Reverse (-)
63560551 .. 63562280
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213050.1

Sequence Viewer

Length: 315 bp
ATGAACCTCGGTCCCTCAATCCACCCTCAATCCCTTTCACCCTCTCAAGCTCACACACACTCTCATCCTCCTGCGATTCCGGCAAAGCAAGTTTGGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTAGCAACTCACAGTGATGAGTGGGGAACGAGGTCAAATTTGGTTTACACAGTCAATGATATTGATCTGATCCGAGCGGAATGGGCTGAGCATGTTTTGAAGTTCCCAGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

5.92

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 275
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 2 cut(s) 147, 170
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 2 cut(s) 50, 125
AluI AGCT 2 cut(s) 50, 125
AlwI GGATC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 30
AvaII GGWCC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 164
BfaI CTAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 140
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse8I GATNNNNATC 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 261
BseMII CTCAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 80
Bsp143I GATC 2 cut(s) 262, 267
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 262, 267
Bst4CI ACNGT 2 cut(s) 212, 250
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 162, 285
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 2 cut(s) 265, 270
BstMBI GATC 2 cut(s) 262, 267
BstMWI GCNNNNNNNGC 3 cut(s) 80, 94, 281
BstNSI RCATGY 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 11
CviAII CATG 1 cut(s) 290
CviJI RGCY 3 cut(s) 50, 125, 284
CviKI_1 RGCY 3 cut(s) 50, 125, 284
DdeI CTNAG 2 cut(s) 162, 285
DpnI GATC 2 cut(s) 264, 269
DpnII GATC 2 cut(s) 262, 267
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 147, 170
FaeI CATG 1 cut(s) 293
FaiI YATR 1 cut(s) 291
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 140
HapII CCGG 1 cut(s) 80
Hin1II CATG 1 cut(s) 293
HinfI GANTC 2 cut(s) 76, 158
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 267, 272
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 212, 250
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 94, 281
HpyF3I CTNAG 2 cut(s) 162, 285
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 2 cut(s) 262, 267
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 3 cut(s) 84, 93, 176
Lsp1109I GCAGC 1 cut(s) 151
MaeI CTAG 1 cut(s) 200
MalI GATC 2 cut(s) 264, 269
MbiI CCGCTC 1 cut(s) 275
MboI GATC 2 cut(s) 262, 267
MboII GAAGA 2 cut(s) 167, 176
MluCI AATT 3 cut(s) 143, 235, 310
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 6 cut(s) 17, 25, 36, 52, 78, 222
MseI TTAA 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 80, 94, 281
NdeII GATC 2 cut(s) 262, 267
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 13
NspI RCATGY 1 cut(s) 293
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 262, 267
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 167
SetI ASST 5 cut(s) 9, 52, 107, 127, 233
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 3 cut(s) 143, 235, 310
SsiI CCGC 1 cut(s) 275
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 212, 250
TasI AATT 3 cut(s) 143, 235, 310
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 1 cut(s) 235
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.