Rh1CG227100

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001428
Physical Location & Seq
Reverse (-)
48083126 .. 48088402
5277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG227100.1

Sequence Viewer

Length: 1242 bp
ATGAGTAATCAGAATCAAGTAGCACCACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCGGGAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGATGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCGAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGCCTAAGTGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACTCCTAATAATCAGCCTATACATGGCTCTTCCTCATCCTCTCTATCAGCAAGGCAATTGCTCAGAGAACAACAGGATGATGAGTATCTTGCATCCCTCTTAGCTGATAAAGAGAAAGAAATGAATGCTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAACAAAAGAATCGAGCCAATGGAATTTGAGAGAAGGCTAGATGCAAAAAGTGCTTCACTTCCTTGTGAACCAGCACCAGATGATGAGAATGCTGTGACTCTTCTTGTTCGGATGCCAAATGGCAGCCGCCTTAGCCGTCGCTTTCGCAAATCTGACAGGCTTCAGCTTCTTTTTGACTTCATAGATGTTGGTAGAGTGGTGGGGCCTGGAACTTACAGAGTGGTGAGGTCATATCCTCGGCATGCTTTCACCGCCAATAACAGCTTATTAACATTGAGTGAACTTGGCCTGACCAACAAGCAAGAAGCATTATTTTTGGAACTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

413

Amino Acids

45.47

Weight (kDa)

5.2

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBX PF00789 332 - 411 3.1e-17 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 2 cut(s) 1039, 1164
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 3 cut(s) 414, 427, 935
AcuI CTGAAG 4 cut(s) 441, 597, 620, 1058
AfaI GTAC 2 cut(s) 373, 538
AfiI CCNNNNNNNGG 4 cut(s) 32, 169, 395, 767
AgsI TTSAA 7 cut(s) 70, 196, 311, 323, 330, 463, 901
AjnI CCWGG 5 cut(s) 59, 163, 388, 523, 1117
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 1 cut(s) 515
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 3 cut(s) 233, 1115, 1198
ApeKI GCWGC 6 cut(s) 211, 314, 499, 589, 884, 1035
ApoI RAATTY 3 cut(s) 414, 427, 935
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 1115
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 3 cut(s) 144, 1147, 1153
BaeGI GKGCMC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 470
BbvI GCAGC 6 cut(s) 223, 301, 511, 601, 871, 1047
BccI CCATC 2 cut(s) 157, 614
BceAI ACGGC 1 cut(s) 1032
BciT130I CCWGG 5 cut(s) 61, 165, 390, 525, 1119
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 710
BfaI CTAG 1 cut(s) 950
BfmI CTRYAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 106
BisI GCNGC 7 cut(s) 212, 315, 500, 590, 885, 1036, 1039
BlsI GCNGC 7 cut(s) 213, 316, 501, 591, 886, 1037, 1040
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 6 cut(s) 61, 165, 202, 390, 525, 1119
BmgT120I GGNCC 1 cut(s) 1115
BmiI GGNNCC 3 cut(s) 147, 183, 1116
BmrFI CCNGG 6 cut(s) 61, 165, 202, 390, 525, 1119
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 5 cut(s) 259, 486, 845, 943, 1014
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 1043
BpuEI CTTGAG 2 cut(s) 259, 734
BpuMI CCSGG 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 2 cut(s) 438, 828
BsaJI CCNNGG 2 cut(s) 163, 1148
BsaWI WCCGGW 2 cut(s) 244, 403
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 169, 395, 767
Bse1I ACTGG 3 cut(s) 142, 181, 654
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 2 cut(s) 438, 828
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 5 cut(s) 61, 165, 390, 525, 1119
BseDI CCNNGG 2 cut(s) 163, 1148
BseGI GGATG 6 cut(s) 253, 274, 779, 826, 836, 1029
BseJI GATNNNNATC 2 cut(s) 438, 828
BseLI CCNNNNNNNGG 4 cut(s) 32, 169, 395, 767
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 237, 820
BseNI ACTGG 3 cut(s) 142, 181, 654
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 6 cut(s) 223, 301, 511, 601, 871, 1047
BsgI GTGCAG 2 cut(s) 465, 705
BshFI GGCC 3 cut(s) 235, 1117, 1200
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 3 cut(s) 201, 245, 404
BslI CCNNNNNNNGG 4 cut(s) 32, 169, 395, 767
BsmAI GTCTC 1 cut(s) 710
BsmI GAATGC 2 cut(s) 874, 1006
BsnI GGCC 3 cut(s) 235, 1117, 1200
Bsp1286I GDGCHC 1 cut(s) 148
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 3 cut(s) 106, 439, 520
BspACI CCGC 2 cut(s) 1039, 1164
BspANI GGCC 3 cut(s) 235, 1117, 1200
BspCNI CTCAG 2 cut(s) 236, 819
BspEI TCCGGA 1 cut(s) 244
BspLI GGNNCC 3 cut(s) 147, 183, 1116
BspPI GGATC 1 cut(s) 515
BspQI GCTCTTC 2 cut(s) 600, 778
BspT107I GGYRCC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 3 cut(s) 142, 181, 654
BssECI CCNNGG 2 cut(s) 163, 1148
BssMI GATC 3 cut(s) 106, 439, 520
Bst2UI CCWGG 5 cut(s) 61, 165, 390, 525, 1119
Bst4CI ACNGT 4 cut(s) 92, 101, 371, 662
Bst6I CTCTTC 3 cut(s) 600, 778, 1017
BstAPI GCANNNNNTGC 1 cut(s) 962
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 1155
BstDEI CTNAG 5 cut(s) 223, 612, 806, 844, 1043
BstF5I GGATG 6 cut(s) 253, 274, 779, 826, 836, 1029
BstKTI GATC 3 cut(s) 109, 442, 523
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 3 cut(s) 106, 439, 520
BstMWI GCNNNNNNNGC 4 cut(s) 323, 962, 1044, 1163
BstNI CCWGG 5 cut(s) 61, 165, 390, 525, 1119
BstNSI RCATGY 1 cut(s) 1157
BstSCI CCNGG 6 cut(s) 59, 163, 200, 388, 523, 1117
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 6 cut(s) 223, 301, 511, 601, 871, 1047
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 2 cut(s) 106, 520
BstYI RGATCY 2 cut(s) 106, 520
BsuRI GGCC 3 cut(s) 235, 1117, 1200
BtsCI GGATG 6 cut(s) 253, 274, 779, 826, 836, 1029
BtsIMutI CAGTG 1 cut(s) 667
Cac8I GCNNGC 1 cut(s) 1155
Cfr13I GGNCC 1 cut(s) 1115
Csp6I GTAC 2 cut(s) 372, 537
CviAII CATG 4 cut(s) 540, 767, 878, 1154
CviQI GTAC 2 cut(s) 372, 537
DdeI CTNAG 5 cut(s) 223, 612, 806, 844, 1043
DpnI GATC 3 cut(s) 108, 441, 522
DpnII GATC 3 cut(s) 106, 439, 520
Eam1104I CTCTTC 3 cut(s) 600, 778, 1017
EarI CTCTTC 3 cut(s) 600, 778, 1017
Eco147I AGGCCT 1 cut(s) 235
Eco57I CTGAAG 4 cut(s) 441, 597, 620, 1058
EcoO109I RGGNCCY 1 cut(s) 1115
EcoRII CCWGG 5 cut(s) 59, 163, 388, 523, 1117
FaeI CATG 4 cut(s) 543, 770, 881, 1157
FatI CATG 4 cut(s) 539, 766, 877, 1153
Fnu4HI GCNGC 7 cut(s) 212, 315, 500, 590, 885, 1036, 1039
FokI GGATG 6 cut(s) 260, 281, 766, 823, 833, 1036
Fsp4HI GCNGC 7 cut(s) 212, 315, 500, 590, 885, 1036, 1039
FspBI CTAG 1 cut(s) 950
GluI GCNGC 7 cut(s) 212, 315, 500, 590, 885, 1036, 1039
HaeIII GGCC 3 cut(s) 235, 1117, 1200
HapII CCGG 3 cut(s) 201, 245, 404
Hin1II CATG 4 cut(s) 543, 770, 881, 1157
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HindIII AAGCTT 2 cut(s) 324, 676
HinfI GANTC 5 cut(s) 13, 307, 514, 921, 1009
HpaII CCGG 3 cut(s) 201, 245, 404
HphI GGTGA 3 cut(s) 144, 1147, 1153
Hpy166II GTNNAC 3 cut(s) 913, 980, 1193
Hpy188I TCNGA 7 cut(s) 12, 120, 357, 433, 809, 1023, 1066
Hpy188III TCNNGA 5 cut(s) 225, 245, 276, 419, 518
Hpy8I GTNNAC 3 cut(s) 913, 980, 1193
Hpy99I CGWCG 1 cut(s) 1053
HpyAV CCTTC 5 cut(s) 84, 165, 546, 895, 939
HpyCH4III ACNGT 4 cut(s) 92, 101, 371, 662
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 7 cut(s) 131, 446, 499, 722, 836, 887, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 962, 1044, 1163
HpyF3I CTNAG 5 cut(s) 223, 612, 806, 844, 1043
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 4 cut(s) 543, 770, 881, 1157
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 106, 439, 520
LguI GCTCTTC 2 cut(s) 600, 778
LmnI GCTCC 1 cut(s) 572
Lsp1109I GCAGC 6 cut(s) 223, 301, 511, 601, 871, 1047
LweI GCATC 5 cut(s) 259, 486, 845, 943, 1014
MaeI CTAG 1 cut(s) 950
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 3 cut(s) 95, 172, 1006
MalI GATC 3 cut(s) 108, 441, 522
MboI GATC 3 cut(s) 106, 439, 520
MboII GAAGA 7 cut(s) 311, 434, 475, 617, 626, 765, 1004
MfeI CAATTG 1 cut(s) 800
MflI RGATCY 2 cut(s) 106, 520
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 7 cut(s) 240, 414, 427, 593, 705, 800, 935
MlyI GAGTC 1 cut(s) 1003
MnlI CCTC 9 cut(s) 163, 225, 283, 289, 787, 793, 851, 1131, 1158
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 3 cut(s) 134, 1181, 1240
MslI CAYNNNNRTG 1 cut(s) 663
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 3 cut(s) 201, 245, 404
MspR9I CCNGG 6 cut(s) 61, 165, 202, 390, 525, 1119
MunI CAATTG 1 cut(s) 800
Mva1269I GAATGC 2 cut(s) 874, 1006
MvaI CCWGG 5 cut(s) 61, 165, 390, 525, 1119
MwoI GCNNNNNNNGC 4 cut(s) 323, 962, 1044, 1163
NciI CCSGG 1 cut(s) 202
NdeII GATC 3 cut(s) 106, 439, 520
NlaIII CATG 4 cut(s) 543, 770, 881, 1157
NlaIV GGNNCC 3 cut(s) 147, 183, 1116
NmeAIII GCCGAG 1 cut(s) 1129
NmuCI GTSAC 1 cut(s) 1006
NspI RCATGY 1 cut(s) 1157
PaeI GCATGC 1 cut(s) 1157
PceI AGGCCT 1 cut(s) 235
PciSI GCTCTTC 2 cut(s) 600, 778
PctI GAATGC 2 cut(s) 874, 1006
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 13, 307, 514, 921
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 7 cut(s) 213, 316, 501, 591, 886, 1037, 1040
PleI GAGTC 1 cut(s) 1003
PpsI GAGTC 1 cut(s) 1003
Ppu21I YACGTR 1 cut(s) 491
Psp6I CCWGG 5 cut(s) 59, 163, 388, 523, 1117
PspGI CCWGG 5 cut(s) 59, 163, 388, 523, 1117
PspN4I GGNNCC 3 cut(s) 147, 183, 1116
PspPI GGNCC 1 cut(s) 1115
PsrI GAACNNNNNNTAC 2 cut(s) 165, 197
PsuI RGATCY 2 cut(s) 106, 520
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 373, 538
RsaNI GTAC 2 cut(s) 372, 537
RseI CAYNNNNRTG 1 cut(s) 663
SapI GCTCTTC 2 cut(s) 600, 778
SaqAI TTAA 3 cut(s) 134, 1181, 1240
SatI GCNGC 7 cut(s) 212, 315, 500, 590, 885, 1036, 1039
Sau3AI GATC 3 cut(s) 106, 439, 520
Sau96I GGNCC 1 cut(s) 1115
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 1 cut(s) 1003
ScrFI CCNGG 6 cut(s) 61, 165, 202, 390, 525, 1119
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 5 cut(s) 259, 486, 845, 943, 1014
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 2 cut(s) 274, 713
SmoI CTYRAG 2 cut(s) 274, 713
SphI GCATGC 1 cut(s) 1157
Sse9I AATT 7 cut(s) 240, 414, 427, 593, 705, 800, 935
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 2 cut(s) 1039, 1164
SspMI CTAG 1 cut(s) 950
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 6 cut(s) 59, 163, 200, 388, 523, 1117
TaaI ACNGT 4 cut(s) 92, 101, 371, 662
TaiI ACGT 1 cut(s) 493
TaqI TCGA 1 cut(s) 924
TasI AATT 7 cut(s) 240, 414, 427, 593, 705, 800, 935
TatI WGTACW 2 cut(s) 371, 536
TauI GCSGC 1 cut(s) 1041
TfiI GAWTC 4 cut(s) 13, 307, 514, 921
Tru1I TTAA 3 cut(s) 134, 1181, 1240
Tru9I TTAA 3 cut(s) 134, 1181, 1240
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 1 cut(s) 1006
TseI GCWGC 6 cut(s) 211, 314, 499, 589, 884, 1035
Tsp45I GTSAC 1 cut(s) 1006
TspDTI ATGAA 4 cut(s) 66, 881, 894, 1081
TspRI CASTG 1 cut(s) 667
XapI RAATTY 3 cut(s) 414, 427, 935
XceI RCATGY 1 cut(s) 1157
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 1 cut(s) 950
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.