Rmu_sc0008823.1_g000008

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008823.1
OG0001428
Physical Location & Seq
Reverse (-)
44443 .. 48841
4399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008823.1_g000008.1.cds

Sequence Viewer

Length: 1074 bp
atgccagtagtctgccattctatcgttgccggaaatgagatttccgattgggttgcacgtttgggtcaacgggttgtcgattgggtctcgaaggcactgaatcattctggagtccctcaatccaccctcaatccctttcaccctctcaagctcacacacactctcatcctcctgcgattccggcaaagcaagtttgggtatggaagttttgggtatagaagtttgggtaaagtaagtttgcaaagcatagacgtcctcaagtttggttcgatttctggttcgatttcgaattcttcaagcttgtacaagtccttcatctactgctcccccacaaagcagctagagcaattgactcattgcaaaattcatgttgctattttgcattctgttatccaaagagggcatggcagtagagatctctacaatcggattggttctgcattaactggtcgggcaccatcaccttcacacccaggagaggtaactggggttcctgtaggtttcaatgccagcaatgagcagccttatctctcaggacagaggcctacaattccggatgtggcaagaactgacttggacgcctcaagatatggcaatgatgtggaggaagaaatgattcaagctgctattgaagcttcaaaacgagaagctgaaatgggttctccgaatgtgcaaaacagtactcccaatgtatctcctggtaatgggcttccggttgagaaaattcctgaagaaaattcagattttgatcgtgcagtttcgttgtccttgaagacagcagaacaagagaaagcaatacgtgagatgcagctgaacgacaggaatcaagatcctggagtttatagtacatggaagcaaggaaggtcatcacagcaaaatggagctgaagttgtagagcagcaattagttagtgaagagtctaagcgtgatggtggtagtcatcttcagcagggaaaactggcaactcacagtgatgagtggggaacgaggtcaaatttggtttacacagtcaatgatattgatgagatccgagcggaatgggctgagcatgttttgaagttcccagaaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

357

Amino Acids

39.34

Weight (kDa)

6.19

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 454
AccBSI CCGCTC 1 cut(s) 1034
AccIII TCCGGA 1 cut(s) 553
AciI CCGC 1 cut(s) 1034
AclWI GGATC 2 cut(s) 824, 1021
AcsI RAATTY 5 cut(s) 289, 363, 723, 736, 994
AcuI CTGAAG 3 cut(s) 750, 906, 929
AcyI GRCGYC 2 cut(s) 252, 579
AfaI GTAC 3 cut(s) 305, 682, 847
AfiI CCNNNNNNNGG 2 cut(s) 478, 704
AgsI TTSAA 7 cut(s) 297, 505, 620, 632, 639, 772, 1057
AjnI CCWGG 3 cut(s) 472, 697, 832
AluBI AGCT 8 cut(s) 151, 300, 340, 623, 635, 650, 811, 884
AluI AGCT 8 cut(s) 151, 300, 340, 623, 635, 650, 811, 884
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 2 cut(s) 824, 1021
Aor13HI TCCGGA 1 cut(s) 553
AoxI GGCC 1 cut(s) 542
ApeKI GCWGC 5 cut(s) 337, 520, 623, 808, 898
ApoI RAATTY 5 cut(s) 289, 363, 723, 736, 994
Asp700I GAANNNNTTC 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 131, 453
AsuII TTCGAA 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 454
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbsI GAAGAC 1 cut(s) 779
BbvI GCAGC 5 cut(s) 349, 532, 610, 820, 910
BccI CCATC 2 cut(s) 466, 923
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 3 cut(s) 474, 699, 834
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 495
BglII AGATCT 1 cut(s) 415
BisI GCNGC 5 cut(s) 338, 521, 624, 809, 899
BlpI GCTNAGC 1 cut(s) 1044
BlsI GCNGC 5 cut(s) 339, 522, 625, 810, 900
BmcAI AGTACT 1 cut(s) 682
Bme1390I CCNGG 3 cut(s) 474, 699, 834
BmiI GGNNCC 2 cut(s) 456, 492
BmrFI CCNGG 3 cut(s) 474, 699, 834
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 795
BmuI ACTGGG 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 779
BpmI CTGGAG 2 cut(s) 129, 855
Bpu1102I GCTNAGC 1 cut(s) 1044
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 3 cut(s) 131, 242, 568
BsaAI YACGTR 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 2 cut(s) 252, 579
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 472
BsaWI WCCGGW 2 cut(s) 553, 712
BsaXI ACNNNNNCTCC 2 cut(s) 873, 903
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 704
Bse1I ACTGG 4 cut(s) 5, 451, 490, 963
Bse3DI GCAATG 3 cut(s) 355, 520, 601
Bse8I GATNNNNATC 1 cut(s) 747
BseAI TCCGGA 1 cut(s) 553
BseBI CCWGG 3 cut(s) 474, 699, 834
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 2 cut(s) 165, 562
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 2 cut(s) 478, 704
BseMI GCAATG 3 cut(s) 355, 520, 601
BseMII CTCAG 2 cut(s) 546, 1035
BseNI ACTGG 4 cut(s) 5, 451, 490, 963
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 5 cut(s) 349, 532, 610, 820, 910
BsgI GTGCAG 1 cut(s) 774
BshFI GGCC 1 cut(s) 544
BshNI GGYRCC 1 cut(s) 454
BsiSI CCGG 4 cut(s) 30, 181, 554, 713
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 478, 704
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 1 cut(s) 544
Bso31I GGTCTC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 457
Bsp13I TCCGGA 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 4 cut(s) 415, 748, 829, 1026
Bsp1720I GCTNAGC 1 cut(s) 1044
BspACI CCGC 1 cut(s) 1034
BspANI GGCC 1 cut(s) 544
BspCNI CTCAG 2 cut(s) 545, 1036
BspEI TCCGGA 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 456, 492
BspPI GGATC 2 cut(s) 824, 1021
BspT104I TTCGAA 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 454
BspTNI GGTCTC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 1034
BsrDI GCAATG 3 cut(s) 355, 520, 601
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 4 cut(s) 5, 451, 490, 963
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 4 cut(s) 415, 748, 829, 1026
BssNI GRCGYC 2 cut(s) 252, 579
Bst2UI CCWGG 3 cut(s) 474, 699, 834
Bst4CI ACNGT 3 cut(s) 680, 971, 1009
Bst6I CTCTTC 1 cut(s) 909
BstACI GRCGYC 2 cut(s) 252, 579
BstAUI TGTACA 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 800
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 3 cut(s) 532, 921, 1044
BstF5I GGATG 2 cut(s) 165, 562
BstKTI GATC 4 cut(s) 418, 751, 832, 1029
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 4 cut(s) 415, 748, 829, 1026
BstMWI GCNNNNNNNGC 4 cut(s) 181, 343, 632, 1040
BstNI CCWGG 3 cut(s) 474, 699, 834
BstNSI RCATGY 1 cut(s) 1052
BstSCI CCNGG 3 cut(s) 472, 697, 832
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 5 cut(s) 349, 532, 610, 820, 910
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 3 cut(s) 415, 829, 1026
BstYI RGATCY 3 cut(s) 415, 829, 1026
BsuRI GGCC 1 cut(s) 544
BtsCI GGATG 2 cut(s) 165, 562
BtsIMutI CAGTG 2 cut(s) 95, 976
Cac8I GCNNGC 1 cut(s) 511
CseI GACGC 1 cut(s) 587
Csp6I GTAC 3 cut(s) 304, 681, 846
CviAII CATG 4 cut(s) 368, 404, 849, 1049
CviQI GTAC 3 cut(s) 304, 681, 846
DdeI CTNAG 3 cut(s) 532, 921, 1044
DpnI GATC 4 cut(s) 417, 750, 831, 1028
DpnII GATC 4 cut(s) 415, 748, 829, 1026
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco147I AGGCCT 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 91
Eco57I CTGAAG 3 cut(s) 750, 906, 929
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 3 cut(s) 472, 697, 832
FaeI CATG 4 cut(s) 371, 407, 852, 1052
FaiI YATR 9 cut(s) 201, 216, 248, 369, 405, 591, 843, 850, 1050
FaqI GGGAC 1 cut(s) 98
FatI CATG 4 cut(s) 367, 403, 848, 1048
Fnu4HI GCNGC 5 cut(s) 338, 521, 624, 809, 899
FokI GGATG 2 cut(s) 152, 569
Fsp4HI GCNGC 5 cut(s) 338, 521, 624, 809, 899
FspBI CTAG 1 cut(s) 341
GluI GCNGC 5 cut(s) 338, 521, 624, 809, 899
GsuI CTGGAG 2 cut(s) 129, 855
HaeIII GGCC 1 cut(s) 544
HapII CCGG 4 cut(s) 30, 181, 554, 713
HgaI GACGC 1 cut(s) 587
Hin1I GRCGYC 2 cut(s) 252, 579
Hin1II CATG 4 cut(s) 371, 407, 852, 1052
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HindIII AAGCTT 2 cut(s) 298, 633
HinfI GANTC 7 cut(s) 100, 111, 177, 352, 616, 823, 917
HpaII CCGG 4 cut(s) 30, 181, 554, 713
HphI GGTGA 2 cut(s) 131, 453
Hpy166II GTNNAC 2 cut(s) 68, 1003
Hpy188I TCNGA 5 cut(s) 46, 429, 666, 742, 1031
Hpy188III TCNNGA 7 cut(s) 88, 108, 534, 554, 585, 728, 827
Hpy8I GTNNAC 2 cut(s) 68, 1003
HpyAV CCTTC 4 cut(s) 85, 322, 474, 855
HpyCH4III ACNGT 3 cut(s) 680, 971, 1009
HpyCH4IV ACGT 3 cut(s) 58, 252, 799
HpyCH4V TGCA 8 cut(s) 56, 241, 360, 382, 440, 673, 755, 808
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 343, 632, 1040
HpyF3I CTNAG 3 cut(s) 532, 921, 1044
HpySE526I ACGT 3 cut(s) 58, 252, 799
Hsp92I GRCGYC 2 cut(s) 252, 579
Hsp92II CATG 4 cut(s) 371, 407, 852, 1052
Kpn2I TCCGGA 1 cut(s) 553
Kzo9I GATC 4 cut(s) 415, 748, 829, 1026
LmnI GCTCC 2 cut(s) 329, 881
Lsp1109I GCAGC 5 cut(s) 349, 532, 610, 820, 910
LweI GCATC 1 cut(s) 795
MaeI CTAG 1 cut(s) 341
MaeII ACGT 3 cut(s) 58, 252, 799
MaeIII GTNAC 1 cut(s) 481
MalI GATC 4 cut(s) 417, 750, 831, 1028
MbiI CCGCTC 1 cut(s) 1034
MboI GATC 4 cut(s) 415, 748, 829, 1026
MboII GAAGA 6 cut(s) 285, 620, 743, 784, 926, 935
MfeI CAATTG 1 cut(s) 347
MflI RGATCY 3 cut(s) 415, 829, 1026
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 9 cut(s) 289, 347, 363, 549, 723, 736, 902, 994, 1069
MlyI GAGTC 3 cut(s) 120, 346, 926
MroI TCCGGA 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 615
MseI TTAA 2 cut(s) 443, 1072
MslI CAYNNNNRTG 1 cut(s) 972
MspA1I CMGCKG 1 cut(s) 811
MspI CCGG 4 cut(s) 30, 181, 554, 713
MspR9I CCNGG 3 cut(s) 474, 699, 834
MunI CAATTG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 3 cut(s) 474, 699, 834
MwoI GCNNNNNNNGC 4 cut(s) 181, 343, 632, 1040
NdeII GATC 4 cut(s) 415, 748, 829, 1026
NlaIII CATG 4 cut(s) 371, 407, 852, 1052
NlaIV GGNNCC 2 cut(s) 456, 492
NspI RCATGY 1 cut(s) 1052
NspV TTCGAA 1 cut(s) 287
PceI AGGCCT 1 cut(s) 544
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 4 cut(s) 100, 177, 616, 823
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 5 cut(s) 339, 522, 625, 810, 900
PleI GAGTC 3 cut(s) 119, 346, 925
PpsI GAGTC 3 cut(s) 119, 346, 925
Ppu21I YACGTR 1 cut(s) 800
Psp6I CCWGG 3 cut(s) 472, 697, 832
PspGI CCWGG 3 cut(s) 472, 697, 832
PspN4I GGNNCC 2 cut(s) 456, 492
PsrI GAACNNNNNNTAC 2 cut(s) 474, 506
PsuI RGATCY 3 cut(s) 415, 829, 1026
PvuII CAGCTG 1 cut(s) 811
RsaI GTAC 3 cut(s) 305, 682, 847
RsaNI GTAC 3 cut(s) 304, 681, 846
RseI CAYNNNNRTG 1 cut(s) 972
SaqAI TTAA 2 cut(s) 443, 1072
SatI GCNGC 5 cut(s) 338, 521, 624, 809, 899
Sau3AI GATC 4 cut(s) 415, 748, 829, 1026
ScaI AGTACT 1 cut(s) 682
SchI GAGTC 3 cut(s) 120, 346, 926
ScrFI CCNGG 3 cut(s) 474, 699, 834
SduI GDGCHC 1 cut(s) 457
SfaNI GCATC 1 cut(s) 795
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 972
SmlI CTYRAG 3 cut(s) 146, 257, 583
SmoI CTYRAG 3 cut(s) 146, 257, 583
Sse9I AATT 9 cut(s) 289, 347, 363, 549, 723, 736, 902, 994, 1069
SseBI AGGCCT 1 cut(s) 544
SsiI CCGC 1 cut(s) 1034
SspMI CTAG 1 cut(s) 341
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 3 cut(s) 472, 697, 832
TaaI ACNGT 3 cut(s) 680, 971, 1009
TaiI ACGT 3 cut(s) 61, 255, 802
TaqI TCGA 5 cut(s) 78, 89, 269, 281, 287
TasI AATT 9 cut(s) 289, 347, 363, 549, 723, 736, 902, 994, 1069
TatI WGTACW 3 cut(s) 303, 680, 845
TfiI GAWTC 4 cut(s) 100, 177, 616, 823
Tru1I TTAA 2 cut(s) 443, 1072
Tru9I TTAA 2 cut(s) 443, 1072
TscAI CASTG 2 cut(s) 102, 976
TseI GCWGC 5 cut(s) 337, 520, 623, 808, 898
TspDTI ATGAA 2 cut(s) 304, 356
TspRI CASTG 2 cut(s) 102, 976
XapI RAATTY 5 cut(s) 289, 363, 723, 736, 994
XceI RCATGY 1 cut(s) 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 1 cut(s) 341
ZraI GACGTC 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.