Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008564.1

Orthogroup ID

OG0001428

Physical Location & Seq

Genomic Coordinates Forward (+)

87942 .. 92827

Gene Structure 4886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008564.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgacaaaacctaaactgaagtcgccatctctcactctctctcgggcacgggccctctccctctcagcctctctcctcgacgtgctgagaaggctaggagtgaagggcgtggagataaagaaaccagagcagctcaaaaccatggcctcactcataatccctggaggagagagcaccaccatggctaagcttgccgagaaccacaacctggaatctcctggtaatgggcttccggttgagaaaattcctgaagaaaattcagattttgatcgtgcagtttcgttgtccttgaaggttcttaatctgtctttctttttctgggagcaaggaaggtcatcacagcaaaatggagctgaagttgtagagcagcaattagttagtgaagagtctaagcgtgatggtgctagtcatcttcagcagggaaaactggcaactcacagtgatgaggatgatgagtatcttgcatccctcttagctgataaagagaaagaaatgaatgctgtccatgaagctgcaacttgtcagttgaagggagatgtcaacaaaagaatcgagccaatggtagaatttgagagaaggctagatgcaaaaagtgcttcacttccttgtgaaccagcaccagatgatgagaatgctgtgactcttcttgttcggatgccaaatggtagccgccttagccgtcactttcgcaaatctgacaggcttcaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX UIM

Protein Analysis

237

Amino Acids

26.21

Weight (kDa)

6.03

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00752
fragaria_vesca	FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300
malus_domestica	MD01G1050500.v1.1
prunus_persica	Prupe.2G156600_v2.0.a1
pyrus_communis	pycom01g07530
rosa_chinensis	RchiOBHm_Chr1g0329331 RchiOBHm_Chr1g0352561 RchiOBHm_Chr3g0481331 RchiOBHm_Chr4g0427171
rosa_laevigata	RLG00000028330
rosa_multiflora	Rmu_sc0000147.1_g000024 Rmu_sc0000911.1_g000033 Rmu_sc0008564.1_g000023 Rmu_sc0008823.1_g000008 Rmu_sc0019045.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302630 Rroxscaffold_7G00169710 Rroxscaffold_7G00203150 Rroxscaffold_7G00213050
rosa_rugosa	Rorug01G0230100 Rorug04G0062700 Rorug04G0062800 Rorug04G0062900
rosa_samantha	Rh1AG202000 Rh1AG243600 Rh1BG214200 Rh1CG186900 Rh1CG226800 Rh1CG227100 Rh1DG240200 Rh2AG182200 Rh2DG188600 Rh3AG242000 Rh3DG289800 Rh4DG117700 Rh4DG164500 Rh6CG130000 Rh6CG255900 Rh7DG285300 Rh7DG364500
rosa_wichuraiana	Rw0G009430 Rw1G017790 Rw1G021300 Rw3G029580 Rw4G002460 Rw4G019570 Rw6G016170 Rw7G038890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	1 cut(s)	670
AcsI	RAATTY	3 cut(s)	243, 256, 566
AcuI	CTGAAG	5 cut(s)	38, 270, 375, 398, 689
AfiI	CCNNNNNNNGG	2 cut(s)	208, 224
AgsI	TTSAA	2 cut(s)	292, 529
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	3 cut(s)	160, 207, 217
AluBI	AGCT	5 cut(s)	133, 190, 353, 476, 512
AluI	AGCT	5 cut(s)	133, 190, 353, 476, 512
Alw21I	GWGCWC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	51, 144
ApaI	GGGCCC	1 cut(s)	55
ApeKI	GCWGC	3 cut(s)	130, 367, 512
ApoI	RAATTY	3 cut(s)	243, 256, 566
AspS9I	GGNCC	2 cut(s)	51, 52
AvaI	CYCGRG	1 cut(s)	42
BaeGI	GKGCMC	2 cut(s)	49, 55
BanII	GRGCYC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	142, 379, 499
BccI	CCATC	2 cut(s)	34, 392
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	3 cut(s)	162, 209, 219
BfaI	CTAG	3 cut(s)	95, 405, 581
BisI	GCNGC	4 cut(s)	131, 368, 513, 670
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	4 cut(s)	132, 369, 514, 671
Bme1390I	CCNGG	3 cut(s)	162, 209, 219
BmeT110I	CYCGRG	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	51, 52
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	3 cut(s)	162, 209, 219
BmsI	GCATC	3 cut(s)	473, 574, 645
BpmI	CTGGAG	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	674
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaBI	GATNNNNATC	2 cut(s)	267, 456
BsaJI	CCNNGG	3 cut(s)	141, 160, 180
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 224
Bse1I	ACTGG	1 cut(s)	432
Bse8I	GATNNNNATC	2 cut(s)	267, 456
BseBI	CCWGG	3 cut(s)	162, 209, 219
BseDI	CCNNGG	3 cut(s)	141, 160, 180
BseGI	GGATG	3 cut(s)	454, 464, 660
BseJI	GATNNNNATC	2 cut(s)	267, 456
BseLI	CCNNNNNNNGG	2 cut(s)	208, 224
BseMII	CTCAG	2 cut(s)	77, 78
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	2 cut(s)	65, 180
BseSI	GKGCMC	2 cut(s)	49, 55
BseXI	GCAGC	3 cut(s)	142, 379, 499
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	53, 146
BsiHKAI	GWGCWC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	208, 224
BsmI	GAATGC	2 cut(s)	502, 637
BsnI	GGCC	2 cut(s)	53, 146
BsoBI	CYCGRG	1 cut(s)	42
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	49, 55, 176
Bsp143I	GATC	1 cut(s)	268
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	2 cut(s)	141, 180
BspACI	CCGC	1 cut(s)	670
BspANI	GGCC	2 cut(s)	53, 146
BspCNI	CTCAG	2 cut(s)	77, 78
BspLI	GGNNCC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	432
BssECI	CCNNGG	3 cut(s)	141, 160, 180
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	2 cut(s)	141, 180
Bst2UI	CCWGG	3 cut(s)	162, 209, 219
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	378, 648
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	6 cut(s)	64, 86, 186, 390, 472, 674
BstDSI	CCRYGG	2 cut(s)	141, 180
BstF5I	GGATG	3 cut(s)	454, 464, 660
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 191, 593, 675
BstNI	CCWGG	3 cut(s)	162, 209, 219
BstSCI	CCNGG	3 cut(s)	160, 207, 217
BstSLI	GKGCMC	2 cut(s)	49, 55
BstV1I	GCAGC	3 cut(s)	142, 379, 499
BsuRI	GGCC	2 cut(s)	53, 146
BtgI	CCRYGG	2 cut(s)	141, 180
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	3 cut(s)	454, 464, 660
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	51, 52
CviAII	CATG	3 cut(s)	142, 181, 506
DdeI	CTNAG	6 cut(s)	64, 86, 186, 390, 472, 674
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	378, 648
EarI	CTCTTC	2 cut(s)	378, 648
Eco130I	CCWWGG	2 cut(s)	141, 180
Eco24I	GRGCYC	1 cut(s)	55
Eco57I	CTGAAG	5 cut(s)	38, 270, 375, 398, 689
Eco88I	CYCGRG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	3 cut(s)	160, 207, 217
EcoT14I	CCWWGG	2 cut(s)	141, 180
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	141, 180
FaeI	CATG	3 cut(s)	145, 184, 509
FaiI	YATR	5 cut(s)	143, 155, 182, 507, 712
FatI	CATG	3 cut(s)	141, 180, 505
Fnu4HI	GCNGC	4 cut(s)	131, 368, 513, 670
FokI	GGATG	3 cut(s)	451, 461, 667
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	4 cut(s)	131, 368, 513, 670
FspBI	CTAG	3 cut(s)	95, 405, 581
GluI	GCNGC	4 cut(s)	131, 368, 513, 670
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	53, 146
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	3 cut(s)	145, 184, 509
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	4 cut(s)	212, 386, 549, 640
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	541, 611
Hpy188I	TCNGA	3 cut(s)	262, 654, 697
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	2 cut(s)	541, 611
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	6 cut(s)	84, 97, 286, 324, 523, 570
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	4 cut(s)	275, 464, 515, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 191, 593, 675
HpyF3I	CTNAG	6 cut(s)	64, 86, 186, 390, 472, 674
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	145, 184, 509
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	322, 350
Lsp1109I	GCAGC	3 cut(s)	142, 379, 499
LweI	GCATC	3 cut(s)	473, 574, 645
MaeI	CTAG	3 cut(s)	95, 405, 581
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	637, 680
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	4 cut(s)	263, 395, 404, 635
MhlI	GDGCHC	3 cut(s)	49, 55, 176
MluCI	AATT	4 cut(s)	243, 256, 371, 566
MlyI	GAGTC	2 cut(s)	395, 634
MnlI	CCTC	8 cut(s)	65, 71, 79, 86, 157, 158, 439, 479
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	2 cut(s)	179, 441
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	162, 209, 219
Mva1269I	GAATGC	2 cut(s)	502, 637
MvaI	CCWGG	3 cut(s)	162, 209, 219
MwoI	GCNNNNNNNGC	4 cut(s)	91, 191, 593, 675
NcoI	CCATGG	2 cut(s)	141, 180
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	145, 184, 509
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	637, 680
PctI	GAATGC	2 cut(s)	502, 637
PfeI	GAWTC	2 cut(s)	212, 549
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	132, 369, 514, 671
PleI	GAGTC	2 cut(s)	394, 634
PpsI	GAGTC	2 cut(s)	394, 634
Psp6I	CCWGG	3 cut(s)	160, 207, 217
PspGI	CCWGG	3 cut(s)	160, 207, 217
PspN4I	GGNNCC	1 cut(s)	53
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	51, 52
RseI	CAYNNNNRTG	2 cut(s)	179, 441
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	131, 368, 513, 670
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	51, 52
SchI	GAGTC	2 cut(s)	395, 634
ScrFI	CCNGG	3 cut(s)	162, 209, 219
SduI	GDGCHC	3 cut(s)	49, 55, 176
SfaNI	GCATC	3 cut(s)	473, 574, 645
SmiMI	CAYNNNNRTG	2 cut(s)	179, 441
Sse9I	AATT	4 cut(s)	243, 256, 371, 566
SsiI	CCGC	1 cut(s)	670
SspMI	CTAG	3 cut(s)	95, 405, 581
StyD4I	CCNGG	3 cut(s)	160, 207, 217
StyI	CCWWGG	2 cut(s)	141, 180
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	78, 552
TasI	AATT	4 cut(s)	243, 256, 371, 566
TauI	GCSGC	1 cut(s)	672
TfiI	GAWTC	2 cut(s)	212, 549
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	2 cut(s)	637, 680
TseI	GCWGC	3 cut(s)	130, 367, 512
Tsp45I	GTSAC	2 cut(s)	637, 680
TspDTI	ATGAA	2 cut(s)	509, 522
TspRI	CASTG	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	208
XapI	RAATTY	3 cut(s)	243, 256, 566
XspI	CTAG	3 cut(s)	95, 405, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.