Rh6CG130000

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001428
Physical Location & Seq
Reverse (-)
15643885 .. 15646735
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG130000.1

Sequence Viewer

Length: 597 bp
ATGAGTAATCAGAATCAAGTAGCTCCACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATTATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAAAGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAGCAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACATGGAAGGTATACCTTCTATTTATGGTAGAGTTGCTCAGTTTCATATACAAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

198

Amino Acids

21.89

Weight (kDa)

5.03

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 549
AccIII TCCGGA 1 cut(s) 244
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 2 cut(s) 414, 427
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 373, 538
AfiI CCNNNNNNNGG 3 cut(s) 32, 169, 395
AgsI TTSAA 6 cut(s) 70, 196, 311, 323, 330, 463
AjnI CCWGG 4 cut(s) 59, 163, 388, 523
AluBI AGCT 5 cut(s) 23, 314, 326, 341, 502
AluI AGCT 5 cut(s) 23, 314, 326, 341, 502
AlwI GGATC 1 cut(s) 515
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 211, 314, 499
ApoI RAATTY 2 cut(s) 414, 427
Asp700I GAANNNNTTC 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 470
BbvI GCAGC 3 cut(s) 223, 301, 511
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 4 cut(s) 61, 165, 390, 525
BfmI CTRYAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 106
BisI GCNGC 3 cut(s) 212, 315, 500
BlsI GCNGC 3 cut(s) 213, 316, 501
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 4 cut(s) 61, 165, 390, 525
BmiI GGNNCC 2 cut(s) 147, 183
BmrFI CCNGG 4 cut(s) 61, 165, 390, 525
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 486
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 2 cut(s) 244, 403
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 169, 395
Bse1I ACTGG 2 cut(s) 142, 181
Bse3DI GCAATG 2 cut(s) 211, 292
Bse8I GATNNNNATC 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 4 cut(s) 61, 165, 390, 525
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 32, 169, 395
BseMI GCAATG 2 cut(s) 211, 292
BseMII CTCAG 2 cut(s) 237, 589
BseNI ACTGG 2 cut(s) 142, 181
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 3 cut(s) 223, 301, 511
BsgI GTGCAG 1 cut(s) 465
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 245, 404
BslI CCNNNNNNNGG 3 cut(s) 32, 169, 395
BsnI GGCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 148
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 3 cut(s) 106, 439, 520
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 236, 588
BspEI TCCGGA 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 147, 183
BspPI GGATC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 145
BsrDI GCAATG 2 cut(s) 211, 292
BsrI ACTGG 2 cut(s) 142, 181
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 3 cut(s) 106, 439, 520
BssNAI GTATAC 1 cut(s) 550
BssNI GRCGYC 1 cut(s) 270
Bst1107I GTATAC 1 cut(s) 550
Bst2UI CCWGG 4 cut(s) 61, 165, 390, 525
Bst4CI ACNGT 3 cut(s) 92, 101, 371
BstACI GRCGYC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 223, 575
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 3 cut(s) 109, 442, 523
BstMBI GATC 3 cut(s) 106, 439, 520
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 4 cut(s) 61, 165, 390, 525
BstSCI CCNGG 4 cut(s) 59, 163, 388, 523
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 3 cut(s) 223, 301, 511
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 2 cut(s) 106, 520
BstYI RGATCY 2 cut(s) 106, 520
BstZ17I GTATAC 1 cut(s) 550
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 202
CseI GACGC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 372, 537
CviAII CATG 1 cut(s) 540
CviJI RGCY 9 cut(s) 23, 73, 214, 235, 314, 326, 341, 400, 502
CviKI_1 RGCY 9 cut(s) 23, 73, 214, 235, 314, 326, 341, 400, 502
CviQI GTAC 2 cut(s) 372, 537
DdeI CTNAG 2 cut(s) 223, 575
DpnI GATC 3 cut(s) 108, 441, 522
DpnII GATC 3 cut(s) 106, 439, 520
Eco147I AGGCCT 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 441
EcoRII CCWGG 4 cut(s) 59, 163, 388, 523
FaeI CATG 1 cut(s) 543
FaiI YATR 7 cut(s) 282, 534, 541, 550, 563, 584, 586
FatI CATG 1 cut(s) 539
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 3 cut(s) 212, 315, 500
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 212, 315, 500
GluI GCNGC 3 cut(s) 212, 315, 500
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 245, 404
HgaI GACGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 1 cut(s) 543
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 2 cut(s) 13, 514
HpaII CCGG 2 cut(s) 245, 404
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 4 cut(s) 12, 120, 357, 433
Hpy188III TCNNGA 5 cut(s) 225, 245, 276, 419, 518
Hpy8I GTNNAC 1 cut(s) 550
HpyAV CCTTC 4 cut(s) 84, 165, 538, 563
HpyCH4III ACNGT 3 cut(s) 92, 101, 371
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 4 cut(s) 131, 364, 446, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 223, 575
HpySE526I ACGT 1 cut(s) 490
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 1 cut(s) 543
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 106, 439, 520
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 3 cut(s) 223, 301, 511
LweI GCATC 1 cut(s) 486
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 2 cut(s) 95, 172
MalI GATC 3 cut(s) 108, 441, 522
MboI GATC 3 cut(s) 106, 439, 520
MboII GAAGA 3 cut(s) 311, 434, 475
MflI RGATCY 2 cut(s) 106, 520
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 4 cut(s) 240, 303, 414, 427
MnlI CCTC 4 cut(s) 163, 225, 283, 289
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 2 cut(s) 245, 404
MspR9I CCNGG 4 cut(s) 61, 165, 390, 525
MvaI CCWGG 4 cut(s) 61, 165, 390, 525
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 3 cut(s) 106, 439, 520
NlaIII CATG 1 cut(s) 543
NlaIV GGNNCC 2 cut(s) 147, 183
PceI AGGCCT 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 13, 514
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 3 cut(s) 213, 316, 501
Ppu21I YACGTR 1 cut(s) 491
Psp6I CCWGG 4 cut(s) 59, 163, 388, 523
PspGI CCWGG 4 cut(s) 59, 163, 388, 523
PspN4I GGNNCC 2 cut(s) 147, 183
PsrI GAACNNNNNNTAC 2 cut(s) 165, 197
PsuI RGATCY 2 cut(s) 106, 520
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 373, 538
RsaNI GTAC 2 cut(s) 372, 537
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 3 cut(s) 212, 315, 500
Sau3AI GATC 3 cut(s) 106, 439, 520
ScaI AGTACT 1 cut(s) 373
ScrFI CCNGG 4 cut(s) 61, 165, 390, 525
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 4 cut(s) 240, 303, 414, 427
SseBI AGGCCT 1 cut(s) 235
SspI AATATT 1 cut(s) 593
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 4 cut(s) 59, 163, 388, 523
TaaI ACNGT 3 cut(s) 92, 101, 371
TaiI ACGT 1 cut(s) 493
TasI AATT 4 cut(s) 240, 303, 414, 427
TatI WGTACW 2 cut(s) 371, 536
TfiI GAWTC 2 cut(s) 13, 514
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 3 cut(s) 211, 314, 499
TspDTI ATGAA 2 cut(s) 66, 571
XapI RAATTY 2 cut(s) 414, 427
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.