Rorug01G0230100

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001428
Physical Location & Seq
Forward (+)
33228174 .. 33232410
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0230100.1

Sequence Viewer

Length: 1866 bp
ATGCAAACCAACCCCTTCCAAATCGTAGTTCCAAAACCAATATTCCCCTCACTGATAAATCTACCGGCGGTGCACCGCCCTCCTCAGTCGACGCCGCTGCTTAAACCGCCACGTGCCATCTCCATTTCCACACCCAACGGAAGTACTACTCCGACCACCACCGTTTCAACCATAGACGTGGTCGATGACTCCGTTGCCGCATTCTGGGACTACCAGTTCCTCTTCGTCTCGCAACGCTCCGAAACAACCGAACCGGTGACACTCCGAGTGGTTGAAGGCGCGGTCCCGCCGGAGTTTCCTTCCGGAACGTACTACTTGACGGGACCGGGGCTCTTCAGCGACGACCATGGCTCCACTGTGCACCCCTTGGATGGTCACGGCTACCTCAGGGCTTTTAGCTTCGATAAGATTAATGGGGACGAGGTGAAGGTCAAGTTCATGGCCAAGTACGTGAAGACTGAGGCGCAGGTGGAAGAGCACGATCCGGTGACCGGCGCGTGGCGGTTCACGCACAGGGGGCCGTTTTCGGTGTTGAAGGGAGGACAGAAAGTTGGGAACACTAAGGTGATGAAGAATGTGGCGAATACTAGTGTGTTGAGCTGGGGCGGGAGGCTGTTGTGCTTGTGGGAAGGTGGGGACCCGTATGAGATTGAACCGGAGACGTTGGCTACTGTCGGGAAGGTCAAGCTGATGGAGGGTTGTGATCCGGTGGTGGAGAGTGGTGGTGGTGGTGGCAGTGGTGTATGGGATGTTGCTGCGAGGTTGCTGAAGCCGATTTTGTACGGAGTGTTTAAAATGCCACCTAAGCGACTATTGTCTCATTACAAGCTGGACACTTGCAGAAATAGACTTCTTATGATGTCGTGCAATGCAGAAGATATGCTTCTGCCACGCAGTCATTTTACATTTTATGAATTTGACTCAACTTTTAAGGAGGTGGCAAAGCAAGAGTTTACCATCCCAGATCACTTGATGATCCATGACTGGGCTTTCACTGACACTCATTATATCTTATTTGCTAATCGCATCAAGCTTGATGTTGTCGGTGCAATGACTGCAGTCTGTGGAACTACTCCGATGATAACAGCATTATCAGTAAACCCTAGCAAGGACACTTCTCCCATATACTTGCTTCCTCGCTTTCCCGATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTATTGAAGCTCCTTCACAATTTTGGCTGCTACATGTATGCAATGCCTATGAGAATTTGGATGAGAATGGGAATTCGGAGATCCAAATACACGGTTCTGCTTGCTCTTACGAGTGGTTCAATTTCCAAAAGTTATTTGGATATGATTGGCAAAGTAGTAAACTAGACCCTTCGGTTATGAACATAAATGGAAGCCAAAGCAAGACATTGCCTCACCTTGTTCAGGTTTCCATCAACTTGGATGCCAATGGGAACTGTCAAAGATGTGATGCGGAGCCTTTGAACGAGTGGAATAATTCATCAGATTTTCCAGTGATCAATCCAGCATTTTCAGGCAGCAAAAACAAATACATATATGCAGCAGCTTCTTCGGGTTCTCGCAGTGCATTGCCAAGCTTTCCATTTGACATGGTGGTGAAGCTCAATGCTTCAACTAAATCTGTGCACAAATGGTCTGTTGGTAGTAGAAGATTTATCGGCGAACCCACTTTCATCGCCAAAGGTTCTGAAGAAGATGAAGGTTACATTCTTGTAGTCGAGTATGCAGTTGCAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCGAAGAAGATTGGAGCAGCTGATGCACTTCTGGCAAGACTTGAAGTCCCCAAGCAACTAAATTTTCCTCTTGGTTTTCATGGTTTTTGGGCTAGTGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

621

Amino Acids

69.0

Weight (kDa)

5.85

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPE65 PF03055 76 - 618 1.7e-90 Retinal pigment epithelial membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1161
AarI CACCTGC 1 cut(s) 457
Acc36I ACCTGC 1 cut(s) 457
AccI GTMKAC 1 cut(s) 89
AccII CGCG 2 cut(s) 281, 497
AccIII TCCGGA 1 cut(s) 302
AclWI GGATC 4 cut(s) 476, 698, 970, 1255
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 4 cut(s) 914, 1234, 1252, 1822
AcuI CTGAAG 3 cut(s) 319, 788, 1707
AcvI CACGTG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 4 cut(s) 145, 311, 449, 782
AfiI CCNNNNNNNGG 7 cut(s) 204, 371, 491, 498, 985, 1108, 1402
AflIII ACRYGT 1 cut(s) 1213
AgeI ACCGGT 1 cut(s) 253
AhdI GACNNNNNGTC 1 cut(s) 1805
AhlI ACTAGT 1 cut(s) 587
AjiI CACGTC 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AleI CACNNNNGTG 1 cut(s) 563
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
Alw21I GWGCWC 4 cut(s) 75, 363, 480, 1626
Alw26I GTCTC 3 cut(s) 232, 653, 822
Alw44I GTGCAC 3 cut(s) 71, 359, 1622
AlwI GGATC 4 cut(s) 476, 698, 970, 1255
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 2 cut(s) 441, 518
ApaLI GTGCAC 3 cut(s) 71, 359, 1622
ApeKI GCWGC 7 cut(s) 97, 755, 1207, 1515, 1538, 1541, 1778
ApoI RAATTY 4 cut(s) 914, 1234, 1252, 1822
AseI ATTAAT 1 cut(s) 411
AsiGI ACCGGT 1 cut(s) 253
AspLEI GCGC 3 cut(s) 281, 466, 497
AspS9I GGNCC 4 cut(s) 283, 323, 518, 637
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 6 cut(s) 268, 436, 499, 577, 1385, 1606
AsuII TTCGAA 1 cut(s) 1763
AvaII GGWCC 3 cut(s) 283, 323, 637
AxyI CCTNAGG 1 cut(s) 386
BaeGI GKGCMC 3 cut(s) 75, 363, 1626
BalI TGGCCA 1 cut(s) 443
BanII GRGCYC 1 cut(s) 333
BbrPI CACGTG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 4 cut(s) 75, 363, 480, 1626
BbvI GCAGC 7 cut(s) 84, 742, 1194, 1527, 1550, 1553, 1790
BccI CCATC 5 cut(s) 125, 365, 685, 965, 1418
BceAI ACGGC 2 cut(s) 394, 505
BcgI CGANNNNNNTGC 4 cut(s) 79, 113, 1530, 1564
BclI TGATCA 1 cut(s) 1494
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 3 cut(s) 232, 653, 822
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 4 cut(s) 588, 1104, 1343, 1854
BfmI CTRYAG 1 cut(s) 1056
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 9 cut(s) 95, 98, 198, 756, 1208, 1516, 1539, 1542, 1779
BlsI GCNGC 9 cut(s) 96, 99, 199, 757, 1209, 1517, 1540, 1543, 1780
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 3 cut(s) 283, 323, 637
BmeRI GACNNNNNGTC 1 cut(s) 1805
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 4 cut(s) 283, 323, 518, 637
BmiI GGNNCC 7 cut(s) 285, 324, 352, 519, 638, 639, 1455
BmrFI CCNGG 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 994
BmsI GCATC 4 cut(s) 1035, 1411, 1438, 1774
BmuI ACTGGG 1 cut(s) 994
BoxI GACNNNNGTC 2 cut(s) 814, 1058
BpiI GAAGAC 1 cut(s) 461
Bpu10I CCTNAGC 1 cut(s) 804
Bpu14I TTCGAA 1 cut(s) 1763
BpuMI CCSGG 1 cut(s) 327
BsaAI YACGTR 2 cut(s) 113, 451
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 326, 346, 366
BsaWI WCCGGW 5 cut(s) 253, 302, 484, 655, 706
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 7 cut(s) 204, 371, 491, 498, 985, 1108, 1402
Bse118I RCCGGY 3 cut(s) 64, 253, 491
Bse1I ACTGG 3 cut(s) 214, 989, 1490
Bse21I CCTNAGG 1 cut(s) 386
Bse3DI GCAATG 5 cut(s) 874, 1056, 1228, 1385, 1565
BseAI TCCGGA 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 326, 346, 366
BseGI GGATG 5 cut(s) 376, 754, 957, 1246, 1426
BseLI CCNNNNNNNGG 7 cut(s) 204, 371, 491, 498, 985, 1108, 1402
BseMI GCAATG 5 cut(s) 874, 1056, 1228, 1385, 1565
BseMII CTCAG 3 cut(s) 98, 400, 450
BseNI ACTGG 3 cut(s) 214, 989, 1490
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 3 cut(s) 75, 363, 1626
BseXI GCAGC 7 cut(s) 84, 742, 1194, 1527, 1550, 1553, 1790
BseYI CCCAGC 1 cut(s) 600
Bsh1236I CGCG 2 cut(s) 281, 497
BshFI GGCC 2 cut(s) 443, 520
BshTI ACCGGT 1 cut(s) 253
BsiHKAI GWGCWC 4 cut(s) 75, 363, 480, 1626
BsiSI CCGG 9 cut(s) 65, 254, 290, 303, 326, 485, 492, 656, 707
BslFI GGGAC 6 cut(s) 221, 269, 336, 431, 650, 1793
BslI CCNNNNNNNGG 7 cut(s) 204, 371, 491, 498, 985, 1108, 1402
BsmAI GTCTC 3 cut(s) 232, 653, 822
BsmBI CGTCTC 2 cut(s) 232, 653
BsmFI GGGAC 6 cut(s) 221, 269, 336, 431, 650, 1793
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 2 cut(s) 443, 520
Bsp119I TTCGAA 1 cut(s) 1763
Bsp1286I GDGCHC 5 cut(s) 75, 333, 363, 480, 1626
Bsp13I TCCGGA 1 cut(s) 302
Bsp143I GATC 6 cut(s) 481, 703, 964, 975, 1260, 1494
Bsp19I CCATGG 1 cut(s) 346
BspANI GGCC 2 cut(s) 443, 520
BspCNI CTCAG 3 cut(s) 97, 399, 451
BspEI TCCGGA 1 cut(s) 302
BspFNI CGCG 2 cut(s) 281, 497
BspLI GGNNCC 7 cut(s) 285, 324, 352, 519, 638, 639, 1455
BspMAI CTGCAG 1 cut(s) 1060
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 4 cut(s) 476, 698, 970, 1255
BspQI GCTCTTC 2 cut(s) 338, 468
BspT104I TTCGAA 1 cut(s) 1763
BsrDI GCAATG 5 cut(s) 874, 1056, 1228, 1385, 1565
BsrFI RCCGGY 3 cut(s) 64, 253, 491
BsrI ACTGG 3 cut(s) 214, 989, 1490
BssAI RCCGGY 3 cut(s) 64, 253, 491
BssECI CCNNGG 3 cut(s) 326, 346, 366
BssMI GATC 6 cut(s) 481, 703, 964, 975, 1260, 1494
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 2 cut(s) 346, 366
Bst4CI ACNGT 5 cut(s) 163, 358, 673, 1274, 1436
Bst6I CTCTTC 3 cut(s) 227, 338, 468
BstACI GRCGYC 1 cut(s) 92
BstAPI GCANNNNNTGC 2 cut(s) 1055, 1784
BstBAI YACGTR 2 cut(s) 113, 451
BstBI TTCGAA 1 cut(s) 1763
BstC8I GCNNGC 1 cut(s) 1282
BstDEI CTNAG 5 cut(s) 84, 386, 459, 561, 804
BstDSI CCRYGG 1 cut(s) 346
BstEII GGTNACC 1 cut(s) 487
BstENI CCTNNNNNAGG 1 cut(s) 1400
BstF5I GGATG 5 cut(s) 376, 754, 957, 1246, 1426
BstFNI CGCG 2 cut(s) 281, 497
BstHHI GCGC 3 cut(s) 281, 466, 497
BstKTI GATC 6 cut(s) 484, 706, 967, 978, 1263, 1497
BstMAI GTCTC 3 cut(s) 232, 653, 822
BstMBI GATC 6 cut(s) 481, 703, 964, 975, 1260, 1494
BstMWI GCNNNNNNNGC 7 cut(s) 106, 508, 517, 805, 1055, 1784, 1793
BstNSI RCATGY 1 cut(s) 1217
BstPAI GACNNNNGTC 2 cut(s) 814, 1058
BstPI GGTNACC 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 1056
BstSLI GKGCMC 3 cut(s) 75, 363, 1626
BstUI CGCG 2 cut(s) 281, 497
BstV1I GCAGC 7 cut(s) 84, 742, 1194, 1527, 1550, 1553, 1790
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 1260
BstXI CCANNNNNNTGG 2 cut(s) 178, 1417
BstYI RGATCY 1 cut(s) 1260
Bsu36I CCTNAGG 1 cut(s) 386
BsuRI GGCC 2 cut(s) 443, 520
BtgI CCRYGG 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 1657
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 5 cut(s) 376, 754, 957, 1246, 1426
BtsI GCAGTG 2 cut(s) 742, 1567
BtsIMutI CAGTG 6 cut(s) 50, 354, 742, 993, 1497, 1567
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 1282
CfoI GCGC 3 cut(s) 281, 466, 497
Cfr10I RCCGGY 3 cut(s) 64, 253, 491
Cfr13I GGNCC 4 cut(s) 283, 323, 518, 637
CseI GACGC 1 cut(s) 100
Csp6I GTAC 4 cut(s) 144, 310, 448, 781
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 6 cut(s) 347, 439, 980, 1214, 1588, 1841
CviQI GTAC 4 cut(s) 144, 310, 448, 781
DdeI CTNAG 5 cut(s) 84, 386, 459, 561, 804
DpnI GATC 6 cut(s) 483, 705, 966, 977, 1262, 1496
DpnII GATC 6 cut(s) 481, 703, 964, 975, 1260, 1494
DraI TTTAAA 1 cut(s) 793
DriI GACNNNNNGTC 1 cut(s) 1805
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 3 cut(s) 227, 338, 468
Eam1105I GACNNNNNGTC 1 cut(s) 1805
EarI CTCTTC 3 cut(s) 227, 338, 468
Eco130I CCWWGG 2 cut(s) 346, 366
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 3 cut(s) 283, 323, 637
Eco57I CTGAAG 3 cut(s) 319, 788, 1707
Eco72I CACGTG 1 cut(s) 113
Eco81I CCTNAGG 1 cut(s) 386
Eco91I GGTNACC 1 cut(s) 487
EcoNI CCTNNNNNAGG 1 cut(s) 1400
EcoO109I RGGNCCY 1 cut(s) 637
EcoO65I GGTNACC 1 cut(s) 487
EcoRI GAATTC 1 cut(s) 1252
EcoT14I CCWWGG 2 cut(s) 346, 366
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 346, 366
Esp3I CGTCTC 2 cut(s) 232, 653
FaeI CATG 6 cut(s) 350, 442, 983, 1217, 1591, 1844
FalI AAGNNNNNCTT 2 cut(s) 867, 899
FaqI GGGAC 6 cut(s) 221, 269, 336, 431, 650, 1793
FatI CATG 6 cut(s) 346, 438, 979, 1213, 1587, 1840
FauI CCCGC 2 cut(s) 294, 599
FbaI TGATCA 1 cut(s) 1494
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 9 cut(s) 95, 98, 198, 756, 1208, 1516, 1539, 1542, 1779
FokI GGATG 5 cut(s) 383, 761, 944, 1253, 1433
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 9 cut(s) 95, 98, 198, 756, 1208, 1516, 1539, 1542, 1779
FspBI CTAG 4 cut(s) 588, 1104, 1343, 1854
GlaI GCGC 3 cut(s) 280, 465, 496
GluI GCNGC 9 cut(s) 95, 98, 198, 756, 1208, 1516, 1539, 1542, 1779
GsaI CCCAGC 1 cut(s) 604
HaeIII GGCC 2 cut(s) 443, 520
HapII CCGG 9 cut(s) 65, 254, 290, 303, 326, 485, 492, 656, 707
HgaI GACGC 1 cut(s) 100
HhaI GCGC 3 cut(s) 281, 466, 497
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 6 cut(s) 350, 442, 983, 1217, 1591, 1844
Hin6I GCGC 3 cut(s) 279, 464, 495
HinP1I GCGC 3 cut(s) 279, 464, 495
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HindIII AAGCTT 2 cut(s) 1031, 1573
HinfI GANTC 3 cut(s) 188, 920, 1760
HpaII CCGG 9 cut(s) 65, 254, 290, 303, 326, 485, 492, 656, 707
HphI GGTGA 6 cut(s) 268, 436, 499, 577, 1385, 1606
Hpy166II GTNNAC 8 cut(s) 73, 90, 361, 507, 954, 1099, 1340, 1624
Hpy188I TCNGA 7 cut(s) 153, 241, 266, 1077, 1258, 1483, 1687
Hpy188III TCNNGA 4 cut(s) 303, 676, 1145, 1166
Hpy8I GTNNAC 8 cut(s) 73, 90, 361, 507, 954, 1099, 1340, 1624
Hpy99I CGWCG 2 cut(s) 94, 344
HpyCH4III ACNGT 5 cut(s) 163, 358, 673, 1274, 1436
HpyCH4IV ACGT 5 cut(s) 112, 177, 308, 450, 662
HpyF10VI GCNNNNNNNGC 7 cut(s) 106, 508, 517, 805, 1055, 1784, 1793
HpyF3I CTNAG 5 cut(s) 84, 386, 459, 561, 804
HpySE526I ACGT 5 cut(s) 112, 177, 308, 450, 662
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 6 cut(s) 350, 442, 983, 1217, 1591, 1844
HspAI GCGC 3 cut(s) 279, 464, 495
KflI GGGWCCC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 1494
Kzo9I GATC 6 cut(s) 481, 703, 964, 975, 1260, 1494
LguI GCTCTTC 2 cut(s) 338, 468
LmnI GCTCC 5 cut(s) 242, 356, 1195, 1453, 1775
Lsp1109I GCAGC 7 cut(s) 84, 742, 1194, 1527, 1550, 1553, 1790
LweI GCATC 4 cut(s) 1035, 1411, 1438, 1774
MaeI CTAG 4 cut(s) 588, 1104, 1343, 1854
MaeII ACGT 5 cut(s) 112, 177, 308, 450, 662
MaeIII GTNAC 5 cut(s) 256, 374, 487, 1700, 1856
MalI GATC 6 cut(s) 483, 705, 966, 977, 1262, 1496
MboI GATC 6 cut(s) 481, 703, 964, 975, 1260, 1494
MflI RGATCY 1 cut(s) 1260
MhlI GDGCHC 5 cut(s) 75, 333, 363, 480, 1626
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 8 cut(s) 914, 1156, 1199, 1234, 1252, 1300, 1474, 1822
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 2 cut(s) 182, 914
MmeI TCCRAC 1 cut(s) 176
Mox20I TGGCCA 1 cut(s) 443
MroI TCCGGA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 443
MseI TTAA 4 cut(s) 102, 411, 792, 930
MslI CAYNNNNRTG 3 cut(s) 176, 563, 1592
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 2 cut(s) 97, 1781
MspI CCGG 9 cut(s) 65, 254, 290, 303, 326, 485, 492, 656, 707
MspR9I CCNGG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 200
MvnI CGCG 2 cut(s) 281, 497
MwoI GCNNNNNNNGC 7 cut(s) 106, 508, 517, 805, 1055, 1784, 1793
NciI CCSGG 1 cut(s) 327
NcoI CCATGG 1 cut(s) 346
NdeII GATC 6 cut(s) 481, 703, 964, 975, 1260, 1494
NlaIII CATG 6 cut(s) 350, 442, 983, 1217, 1591, 1844
NlaIV GGNNCC 7 cut(s) 285, 324, 352, 519, 638, 639, 1455
NmuCI GTSAC 4 cut(s) 256, 374, 487, 1856
NspI RCATGY 1 cut(s) 1217
NspV TTCGAA 1 cut(s) 1763
OliI CACNNNNGTG 1 cut(s) 563
PaqCI CACCTGC 1 cut(s) 457
PciI ACATGT 1 cut(s) 1213
PciSI GCTCTTC 2 cut(s) 338, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 1760
PflFI GACNNNGTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 9 cut(s) 96, 99, 199, 757, 1209, 1517, 1540, 1543, 1780
PleI GAGTC 2 cut(s) 182, 914
PmaCI CACGTG 1 cut(s) 113
PmlI CACGTG 1 cut(s) 113
PpsI GAGTC 2 cut(s) 182, 914
Ppu21I YACGTR 2 cut(s) 113, 451
PpuMI RGGWCCY 1 cut(s) 637
PscI ACATGT 1 cut(s) 1213
PshAI GACNNNNGTC 2 cut(s) 814, 1058
PshBI ATTAAT 1 cut(s) 411
PsiI TTATAA 1 cut(s) 1161
Psp5II RGGWCCY 1 cut(s) 637
PspCI CACGTG 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 487
PspFI CCCAGC 1 cut(s) 600
PspN4I GGNNCC 7 cut(s) 285, 324, 352, 519, 638, 639, 1455
PspPI GGNCC 4 cut(s) 283, 323, 518, 637
PspPPI RGGWCCY 1 cut(s) 637
PstI CTGCAG 1 cut(s) 1060
PsuI RGATCY 1 cut(s) 1260
PsyI GACNNNGTC 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 1781
RsaI GTAC 4 cut(s) 145, 311, 449, 782
RsaNI GTAC 4 cut(s) 144, 310, 448, 781
RseI CAYNNNNRTG 3 cut(s) 176, 563, 1592
SalI GTCGAC 1 cut(s) 88
SapI GCTCTTC 2 cut(s) 338, 468
SaqAI TTAA 4 cut(s) 102, 411, 792, 930
SatI GCNGC 9 cut(s) 95, 98, 198, 756, 1208, 1516, 1539, 1542, 1779
Sau3AI GATC 6 cut(s) 481, 703, 964, 975, 1260, 1494
Sau96I GGNCC 4 cut(s) 283, 323, 518, 637
ScaI AGTACT 1 cut(s) 145
SchI GAGTC 2 cut(s) 182, 914
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 5 cut(s) 75, 333, 363, 480, 1626
SfaNI GCATC 4 cut(s) 1035, 1411, 1438, 1774
SfcI CTRYAG 1 cut(s) 1056
SfuI TTCGAA 1 cut(s) 1763
SinI GGWCC 3 cut(s) 283, 323, 637
SmiMI CAYNNNNRTG 3 cut(s) 176, 563, 1592
SpeI ACTAGT 1 cut(s) 587
Sse9I AATT 8 cut(s) 914, 1156, 1199, 1234, 1252, 1300, 1474, 1822
SspI AATATT 1 cut(s) 42
SspMI CTAG 4 cut(s) 588, 1104, 1343, 1854
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 2 cut(s) 346, 366
TaaI ACNGT 5 cut(s) 163, 358, 673, 1274, 1436
TaiI ACGT 5 cut(s) 115, 180, 311, 453, 665
TaqI TCGA 6 cut(s) 89, 183, 402, 1165, 1716, 1763
TasI AATT 8 cut(s) 914, 1156, 1199, 1234, 1252, 1300, 1474, 1822
TatI WGTACW 1 cut(s) 143
TauI GCSGC 2 cut(s) 97, 200
TfiI GAWTC 1 cut(s) 1760
Tru1I TTAA 4 cut(s) 102, 411, 792, 930
Tru9I TTAA 4 cut(s) 102, 411, 792, 930
TscAI CASTG 6 cut(s) 57, 361, 742, 1000, 1497, 1567
TseFI GTSAC 4 cut(s) 256, 374, 487, 1856
TseI GCWGC 7 cut(s) 97, 755, 1207, 1515, 1538, 1541, 1778
Tsp45I GTSAC 4 cut(s) 256, 374, 487, 1856
TspDTI ATGAA 9 cut(s) 427, 584, 927, 1164, 1373, 1467, 1660, 1710, 1829
TspGWI ACGGA 3 cut(s) 153, 181, 798
TspRI CASTG 6 cut(s) 57, 361, 742, 1000, 1497, 1567
Tth111I GACNNNGTC 1 cut(s) 179
VneI GTGCAC 3 cut(s) 71, 359, 1622
VpaK11BI GGWCC 3 cut(s) 283, 323, 637
VspI ATTAAT 1 cut(s) 411
XagI CCTNNNNNAGG 1 cut(s) 1400
XapI RAATTY 4 cut(s) 914, 1234, 1252, 1822
XceI RCATGY 1 cut(s) 1217
XcmI CCANNNNNNNNNTGG 1 cut(s) 1313
XmiI GTMKAC 1 cut(s) 89
XspI CTAG 4 cut(s) 588, 1104, 1343, 1854
ZrmI AGTACT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.