Rw0G009430

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00371
OG0001428
Physical Location & Seq
Forward (+)
3695 .. 8214
4520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009430.1

Sequence Viewer

Length: 771 bp
ACAGCAGAACAAGAGAAAGCAATACGTGATATGCAGCTGAACGACACGAATCAAGATCCAGGAGTTTATAGTACACGGAAGGAATTAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGTAGCTCACAGTGATGTGACTAGTCAAATTTATCACATATATACTTGTAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACCTAATAATCTGCCTATACATGCCTCTTCCTCATCCTCTCTATCAGCAAGGCAATTGCTCAGAGAACAACATGATGATGAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAACAAAAGAATCGAGCCAATGGAATTTGAGAGAAGGCTAGATGCAAAAAGTGCTTTACTTCCTTGTGAACCAGCACCAAATGATGAGAATGCTGTGACTCTTCTTGTTCGGATGCCAAATGGCAGCCGCCTTAGCCGTCACTTTCGCAAATCTGACAGGCTTCAGACTACTGTTGTTCACTTGTTCGTAGAGGTAAGAAGAATTTTTTTTTTTTTCTTTCTCCTCTTTGTAAGTTTTTATTTTATTTTATTTGTTTATAACTCATGTAAACAACAAGCGGTGTATAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

256

Amino Acids

29.5

Weight (kDa)

6.81

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBX PF00789 187 - 217 3.5e-06 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
AciI CCGC 2 cut(s) 604, 755
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 3 cut(s) 213, 500, 678
AcuI CTGAAG 3 cut(s) 132, 155, 623
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 1 cut(s) 466
AhlI ACTAGT 1 cut(s) 206
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 8 cut(s) 37, 110, 191, 245, 261, 413, 449, 765
AluI AGCT 8 cut(s) 37, 110, 191, 245, 261, 413, 449, 765
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 50
ApeKI GCWGC 4 cut(s) 34, 124, 449, 600
ApoI RAATTY 3 cut(s) 213, 500, 678
BbvI GCAGC 4 cut(s) 46, 136, 436, 612
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 277
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 2 cut(s) 207, 515
BisI GCNGC 5 cut(s) 35, 125, 450, 601, 604
BlsI GCNGC 5 cut(s) 36, 126, 451, 602, 605
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 3 cut(s) 410, 508, 579
Bpu10I CCTNAGC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 26
BsaBI GATNNNNATC 1 cut(s) 393
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bse1I ACTGG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 344, 401, 594
BseJI GATNNNNATC 1 cut(s) 393
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 689
BseXI GCAGC 4 cut(s) 46, 136, 436, 612
BsgI GTGCAG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 571
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 2 cut(s) 604, 755
BspCNI CTCAG 1 cut(s) 384
BspPI GGATC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 189
BssMI GATC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 197, 649
Bst6I CTCTTC 3 cut(s) 135, 343, 582
BstAPI GCANNNNNTGC 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 26
BstDEI CTNAG 4 cut(s) 147, 371, 409, 608
BstF5I GGATG 3 cut(s) 344, 401, 594
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 527, 609
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 4 cut(s) 46, 136, 436, 612
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtsCI GGATG 3 cut(s) 344, 401, 594
BtsIMutI CAGTG 1 cut(s) 202
Csp6I GTAC 1 cut(s) 72
CviAII CATG 4 cut(s) 332, 383, 443, 741
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 4 cut(s) 147, 371, 409, 608
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 135, 343, 582
EarI CTCTTC 3 cut(s) 135, 343, 582
Eco57I CTGAAG 3 cut(s) 132, 155, 623
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 4 cut(s) 335, 386, 446, 744
FatI CATG 4 cut(s) 331, 382, 442, 740
Fnu4HI GCNGC 5 cut(s) 35, 125, 450, 601, 604
FokI GGATG 3 cut(s) 331, 388, 601
Fsp4HI GCNGC 5 cut(s) 35, 125, 450, 601, 604
FspBI CTAG 2 cut(s) 207, 515
GluI GCNGC 5 cut(s) 35, 125, 450, 601, 604
Hin1II CATG 4 cut(s) 335, 386, 446, 744
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 4 cut(s) 49, 143, 486, 574
Hpy166II GTNNAC 5 cut(s) 74, 478, 545, 655, 746
Hpy188I TCNGA 4 cut(s) 374, 588, 631, 642
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 5 cut(s) 74, 478, 545, 655, 746
HpyAV CCTTC 3 cut(s) 73, 460, 504
HpyCH4III ACNGT 2 cut(s) 197, 649
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 5 cut(s) 34, 289, 401, 452, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 609
HpyF3I CTNAG 4 cut(s) 147, 371, 409, 608
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 4 cut(s) 335, 386, 446, 744
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 6 cut(s) 45, 72, 161, 170, 561, 619
Lsp1109I GCAGC 4 cut(s) 46, 136, 436, 612
LweI GCATC 3 cut(s) 410, 508, 579
MaeI CTAG 2 cut(s) 207, 515
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 3 cut(s) 202, 571, 614
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 5 cut(s) 152, 161, 330, 569, 687
MfeI CAATTG 1 cut(s) 365
MflI RGATCY 1 cut(s) 55
MluCI AATT 7 cut(s) 83, 128, 213, 272, 365, 500, 678
MlyI GAGTC 2 cut(s) 152, 568
MnlI CCTC 5 cut(s) 346, 352, 358, 661, 710
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 2 cut(s) 198, 387
MspA1I CMGCKG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 527, 609
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 335, 386, 446, 744
NmuCI GTSAC 3 cut(s) 202, 571, 614
NspI RCATGY 1 cut(s) 335
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 49, 486
PfoI TCCNGGA 1 cut(s) 58
PkrI GCNGC 5 cut(s) 36, 126, 451, 602, 605
PleI GAGTC 2 cut(s) 151, 568
PpsI GAGTC 2 cut(s) 151, 568
Ppu21I YACGTR 1 cut(s) 26
PsiI TTATAA 1 cut(s) 735
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 2 cut(s) 198, 387
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 5 cut(s) 35, 125, 450, 601, 604
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 2 cut(s) 152, 568
ScrFI CCNGG 1 cut(s) 60
SfaNI GCATC 3 cut(s) 410, 508, 579
SmiMI CAYNNNNRTG 2 cut(s) 198, 387
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 7 cut(s) 83, 128, 213, 272, 365, 500, 678
SsiI CCGC 2 cut(s) 604, 755
SspMI CTAG 2 cut(s) 207, 515
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 197, 649
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 489
TasI AATT 7 cut(s) 83, 128, 213, 272, 365, 500, 678
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 2 cut(s) 49, 486
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 3 cut(s) 202, 571, 614
TseI GCWGC 4 cut(s) 34, 124, 449, 600
Tsp45I GTSAC 3 cut(s) 202, 571, 614
TspDTI ATGAA 2 cut(s) 446, 459
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 202
XapI RAATTY 3 cut(s) 213, 500, 678
XceI RCATGY 1 cut(s) 335
XspI CTAG 2 cut(s) 207, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.