Rh7DG364500

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001428
Physical Location & Seq
Forward (+)
48676302 .. 48687794
11493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG364500.1

Sequence Viewer

Length: 1131 bp
ATGGAAGTTTTGGGTATAGAAGTTTGGCAAAGCATAGACGTCCTCAAGTTTGGTTCGATTTCTGGTTCGATTTCGAATTCTTCAAGCTTGGAACATGGAGGCGATCTCAATGAAGCCGTGAATGCACATTTTAGGGAAGGAGATGTACACAGTACAAGTCCTTCATCTACTGCTCCCCCACAGTACAATTTCCCTCAAATGAGTAATCAGAATCAAGTAGCTCCACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTAGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGATTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTTAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGCAAGAACGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGAGCACCAACAACGATGATACACTAAAAAGCAGAGCACAAACCAGAGTCAATGACAATCCACTTGCCTCCCTCTTGCCCTTCAACAGTGGGAAGCACCACGCGCTGAGCTCCTTTCTGCTTTTGCTTAGACTACTCGGCTTGGGCGATGTTCTTGACGTGCCAGGTGGAACTTCCGGTGGCGAGGACCATGAAATTGGCCCACTCGTAGTGCTTGTTCGCCGGTATGACCTTGACGTCTTCGGCCTTGACGTCGCTGAGAACCGTCTCGACCTCCTGGAGATCAAGCAGGCCTTCCTTGGCGGCGGCGGAGGAGGAGAAGGCCTGGTGCAGAGATGGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

376

Amino Acids

40.52

Weight (kDa)

4.82

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1019
AatII GACGTC 3 cut(s) 42, 1023, 1038
AccB1I GGYRCC 1 cut(s) 343
AccII CGCG 1 cut(s) 887
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 3 cut(s) 1086, 1089, 1092
AcsI RAATTY 3 cut(s) 76, 612, 625
AcuI CTGAAG 3 cut(s) 639, 714, 737
AcyI GRCGYC 4 cut(s) 39, 468, 1020, 1035
AfaI GTAC 4 cut(s) 147, 154, 185, 571
AfiI CCNNNNNNNGG 3 cut(s) 230, 367, 593
AgsI TTSAA 7 cut(s) 84, 268, 394, 509, 521, 661, 868
AhlI ACTAGT 1 cut(s) 335
AjiI CACGTC 1 cut(s) 943
AjnI CCWGG 6 cut(s) 257, 361, 586, 946, 1059, 1107
AluBI AGCT 7 cut(s) 87, 221, 512, 524, 539, 692, 894
AluI AGCT 7 cut(s) 87, 221, 512, 524, 539, 692, 894
Alw21I GWGCWC 3 cut(s) 791, 823, 896
Alw26I GTCTC 1 cut(s) 1055
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 5 cut(s) 431, 982, 1027, 1074, 1105
ApeKI GCWGC 3 cut(s) 409, 512, 706
ApoI RAATTY 3 cut(s) 76, 612, 625
Asp700I GAANNNNTTC 1 cut(s) 504
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 2 cut(s) 970, 983
AsuHPI GGTGA 1 cut(s) 342
AsuII TTCGAA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 970
BaeGI GKGCMC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 896
BarI GAAGNNNNNNTAC 4 cut(s) 129, 145, 161, 177
BbsI GAAGAC 1 cut(s) 1015
Bbv12I GWGCWC 3 cut(s) 791, 823, 896
BbvI GCAGC 3 cut(s) 421, 499, 718
BccI CCATC 3 cut(s) 355, 731, 1113
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
BcoDI GTCTC 1 cut(s) 1055
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 336, 1129
BfmI CTRYAG 1 cut(s) 384
BglII AGATCT 1 cut(s) 304
BisI GCNGC 5 cut(s) 410, 513, 707, 1087, 1090
BlpI GCTNAGC 1 cut(s) 890
BlsI GCNGC 5 cut(s) 411, 514, 708, 1088, 1091
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
Bme18I GGWCC 1 cut(s) 970
BmgBI CACGTC 1 cut(s) 943
BmgT120I GGNCC 2 cut(s) 970, 983
BmiI GGNNCC 2 cut(s) 345, 381
BmrFI CCNGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
BmrI ACTGGG 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 1015
BplI GAGNNNNNCTC 2 cut(s) 90, 122
BpmI CTGGAG 1 cut(s) 1082
Bpu1102I GCTNAGC 1 cut(s) 890
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 2 cut(s) 29, 457
BsaBI GATNNNNATC 1 cut(s) 636
BsaHI GRCGYC 4 cut(s) 39, 468, 1020, 1035
BsaJI CCNNGG 2 cut(s) 361, 1081
BsaWI WCCGGW 3 cut(s) 442, 601, 959
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 367, 593
Bse118I RCCGGY 1 cut(s) 1005
Bse1I ACTGG 2 cut(s) 379, 771
Bse3DI GCAATG 2 cut(s) 409, 490
Bse8I GATNNNNATC 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
BseDI CCNNGG 2 cut(s) 361, 1081
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 3 cut(s) 230, 367, 593
BseMI GCAATG 2 cut(s) 409, 490
BseMII CTCAG 3 cut(s) 435, 881, 1032
BseNI ACTGG 2 cut(s) 379, 771
BseRI GAGGAG 2 cut(s) 1110, 1113
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 3 cut(s) 421, 499, 718
BsgI GTGCAG 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 887
BshFI GGCC 5 cut(s) 433, 984, 1029, 1076, 1107
BshNI GGYRCC 1 cut(s) 343
BsiHKAI GWGCWC 3 cut(s) 791, 823, 896
BsiSI CCGG 4 cut(s) 443, 602, 960, 1006
BslI CCNNNNNNNGG 3 cut(s) 230, 367, 593
BsmAI GTCTC 1 cut(s) 1055
BsmBI CGTCTC 1 cut(s) 1055
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 5 cut(s) 433, 984, 1029, 1076, 1107
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 4 cut(s) 346, 791, 823, 896
Bsp13I TCCGGA 1 cut(s) 442
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 4 cut(s) 103, 304, 637, 1065
Bsp1720I GCTNAGC 1 cut(s) 890
BspACI CCGC 3 cut(s) 1086, 1089, 1092
BspANI GGCC 5 cut(s) 433, 984, 1029, 1076, 1107
BspCNI CTCAG 3 cut(s) 434, 882, 1033
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 1 cut(s) 887
BspLI GGNNCC 2 cut(s) 345, 381
BspT104I TTCGAA 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 409, 490
BsrFI RCCGGY 1 cut(s) 1005
BsrGI TGTACA 1 cut(s) 145
BsrI ACTGG 2 cut(s) 379, 771
BssAI RCCGGY 1 cut(s) 1005
BssECI CCNNGG 2 cut(s) 361, 1081
BssMI GATC 4 cut(s) 103, 304, 637, 1065
BssNI GRCGYC 4 cut(s) 39, 468, 1020, 1035
BssT1I CCWWGG 1 cut(s) 1081
Bst2UI CCWGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
Bst4CI ACNGT 9 cut(s) 152, 183, 290, 299, 569, 672, 779, 872, 1049
Bst6I CTCTTC 1 cut(s) 717
BstACI GRCGYC 4 cut(s) 39, 468, 1020, 1035
BstAUI TGTACA 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 400, 1074
BstDEI CTNAG 5 cut(s) 421, 729, 890, 911, 1041
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 1 cut(s) 887
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 4 cut(s) 106, 307, 640, 1068
BstMAI GTCTC 1 cut(s) 1055
BstMBI GATC 4 cut(s) 103, 304, 637, 1065
BstMWI GCNNNNNNNGC 3 cut(s) 122, 521, 886
BstNI CCWGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
BstSCI CCNGG 6 cut(s) 257, 361, 586, 946, 1059, 1107
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 1 cut(s) 887
BstV1I GCAGC 3 cut(s) 421, 499, 718
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 980
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 5 cut(s) 433, 984, 1029, 1076, 1107
BtgZI GCGATG 1 cut(s) 945
BtrI CACGTC 1 cut(s) 943
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 784, 877
Cac8I GCNNGC 2 cut(s) 400, 1074
CfoI GCGC 1 cut(s) 889
Cfr10I RCCGGY 1 cut(s) 1005
Cfr13I GGNCC 2 cut(s) 970, 983
CseI GACGC 1 cut(s) 476
Csp6I GTAC 4 cut(s) 146, 153, 184, 570
CviAII CATG 2 cut(s) 95, 974
CviQI GTAC 4 cut(s) 146, 153, 184, 570
DdeI CTNAG 5 cut(s) 421, 729, 890, 911, 1041
DpnI GATC 4 cut(s) 105, 306, 639, 1067
DpnII GATC 4 cut(s) 103, 304, 637, 1065
DraI TTTAAA 1 cut(s) 528
DrdI GACNNNNNNGTC 1 cut(s) 1019
DseDI GACNNNNNNGTC 1 cut(s) 1019
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
EciI GGCGGA 1 cut(s) 1107
Ecl136II GAGCTC 1 cut(s) 894
Eco130I CCWWGG 1 cut(s) 1081
Eco147I AGGCCT 3 cut(s) 433, 1076, 1107
Eco24I GRGCYC 1 cut(s) 896
Eco47I GGWCC 1 cut(s) 970
Eco53kI GAGCTC 1 cut(s) 894
Eco57I CTGAAG 3 cut(s) 639, 714, 737
EcoICRI GAGCTC 1 cut(s) 894
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 6 cut(s) 257, 361, 586, 946, 1059, 1107
EcoT14I CCWWGG 1 cut(s) 1081
EcoT38I GRGCYC 1 cut(s) 896
ErhI CCWWGG 1 cut(s) 1081
Esp3I CGTCTC 1 cut(s) 1055
FaeI CATG 2 cut(s) 98, 977
FaiI YATR 6 cut(s) 17, 35, 96, 480, 975, 1011
FalI AAGNNNNNCTT 2 cut(s) 1061, 1093
FatI CATG 2 cut(s) 94, 973
Fnu4HI GCNGC 5 cut(s) 410, 513, 707, 1087, 1090
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 896
Fsp4HI GCNGC 5 cut(s) 410, 513, 707, 1087, 1090
FspBI CTAG 2 cut(s) 336, 1129
GlaI GCGC 1 cut(s) 888
GluI GCNGC 5 cut(s) 410, 513, 707, 1087, 1090
GsuI CTGGAG 1 cut(s) 1082
HaeIII GGCC 5 cut(s) 433, 984, 1029, 1076, 1107
HapII CCGG 4 cut(s) 443, 602, 960, 1006
HgaI GACGC 1 cut(s) 476
HhaI GCGC 1 cut(s) 889
Hin1I GRCGYC 4 cut(s) 39, 468, 1020, 1035
Hin1II CATG 2 cut(s) 98, 977
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HindIII AAGCTT 2 cut(s) 85, 522
HinfI GANTC 4 cut(s) 211, 505, 725, 831
HpaII CCGG 4 cut(s) 443, 602, 960, 1006
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 4 cut(s) 210, 318, 555, 631
Hpy188III TCNNGA 6 cut(s) 423, 443, 474, 617, 938, 1052
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 1040
HpyAV CCTTC 7 cut(s) 131, 171, 282, 363, 874, 1087, 1097
HpyCH4III ACNGT 9 cut(s) 152, 183, 290, 299, 569, 672, 779, 872, 1049
HpyCH4IV ACGT 4 cut(s) 39, 942, 1020, 1035
HpyCH4V TGCA 5 cut(s) 125, 329, 562, 644, 1114
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 521, 886
HpyF3I CTNAG 5 cut(s) 421, 729, 890, 911, 1041
HpySE526I ACGT 4 cut(s) 39, 942, 1020, 1035
Hsp92I GRCGYC 4 cut(s) 39, 468, 1020, 1035
Hsp92II CATG 2 cut(s) 98, 977
HspAI GCGC 1 cut(s) 887
Kpn2I TCCGGA 1 cut(s) 442
Kzo9I GATC 4 cut(s) 103, 304, 637, 1065
LmnI GCTCC 4 cut(s) 178, 226, 689, 899
Lsp1109I GCAGC 3 cut(s) 421, 499, 718
MaeI CTAG 2 cut(s) 336, 1129
MaeII ACGT 4 cut(s) 39, 942, 1020, 1035
MaeIII GTNAC 2 cut(s) 293, 370
MalI GATC 4 cut(s) 105, 306, 639, 1067
MboI GATC 4 cut(s) 103, 304, 637, 1065
MboII GAAGA 6 cut(s) 72, 509, 632, 734, 743, 1015
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 4 cut(s) 346, 791, 823, 896
MluCI AATT 7 cut(s) 76, 187, 438, 612, 625, 710, 978
MlyI GAGTC 2 cut(s) 734, 840
MroI TCCGGA 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 2 cut(s) 332, 527
MslI CAYNNNNRTG 1 cut(s) 780
MspI CCGG 4 cut(s) 443, 602, 960, 1006
MspR9I CCNGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
MvnI CGCG 1 cut(s) 887
MwoI GCNNNNNNNGC 3 cut(s) 122, 521, 886
NdeII GATC 4 cut(s) 103, 304, 637, 1065
NlaIII CATG 2 cut(s) 98, 977
NlaIV GGNNCC 2 cut(s) 345, 381
NmeAIII GCCGAG 1 cut(s) 900
NspV TTCGAA 1 cut(s) 74
PceI AGGCCT 3 cut(s) 433, 1076, 1107
PcsI WCGNNNNNNNCGW 2 cut(s) 927, 1032
PctI GAATGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 211, 505
PfoI TCCNGGA 1 cut(s) 1059
PkrI GCNGC 5 cut(s) 411, 514, 708, 1088, 1091
PleI GAGTC 2 cut(s) 733, 839
PpsI GAGTC 2 cut(s) 733, 839
Psp124BI GAGCTC 1 cut(s) 896
Psp6I CCWGG 6 cut(s) 257, 361, 586, 946, 1059, 1107
PspGI CCWGG 6 cut(s) 257, 361, 586, 946, 1059, 1107
PspN4I GGNNCC 2 cut(s) 345, 381
PspPI GGNCC 2 cut(s) 970, 983
PsrI GAACNNNNNNTAC 4 cut(s) 363, 395, 984, 1016
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 4 cut(s) 147, 154, 185, 571
RsaNI GTAC 4 cut(s) 146, 153, 184, 570
RseI CAYNNNNRTG 1 cut(s) 780
SacI GAGCTC 1 cut(s) 896
SaqAI TTAA 2 cut(s) 332, 527
SatI GCNGC 5 cut(s) 410, 513, 707, 1087, 1090
Sau3AI GATC 4 cut(s) 103, 304, 637, 1065
Sau96I GGNCC 2 cut(s) 970, 983
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 2 cut(s) 734, 840
ScrFI CCNGG 6 cut(s) 259, 363, 588, 948, 1061, 1109
SduI GDGCHC 4 cut(s) 346, 791, 823, 896
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 1 cut(s) 970
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 2 cut(s) 44, 472
SmoI CTYRAG 2 cut(s) 44, 472
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 7 cut(s) 76, 187, 438, 612, 625, 710, 978
SseBI AGGCCT 3 cut(s) 433, 1076, 1107
SsiI CCGC 3 cut(s) 1086, 1089, 1092
SspMI CTAG 2 cut(s) 336, 1129
SstI GAGCTC 1 cut(s) 896
StuI AGGCCT 3 cut(s) 433, 1076, 1107
StyD4I CCNGG 6 cut(s) 257, 361, 586, 946, 1059, 1107
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 9 cut(s) 152, 183, 290, 299, 569, 672, 779, 872, 1049
TaiI ACGT 4 cut(s) 42, 945, 1023, 1038
TaqI TCGA 4 cut(s) 56, 68, 74, 1053
TasI AATT 7 cut(s) 76, 187, 438, 612, 625, 710, 978
TatI WGTACW 4 cut(s) 145, 152, 183, 569
TauI GCSGC 2 cut(s) 1089, 1092
TfiI GAWTC 2 cut(s) 211, 505
Tru1I TTAA 2 cut(s) 332, 527
Tru9I TTAA 2 cut(s) 332, 527
TscAI CASTG 2 cut(s) 784, 877
TseI GCWGC 3 cut(s) 409, 512, 706
TspDTI ATGAA 4 cut(s) 126, 153, 264, 990
TspRI CASTG 2 cut(s) 784, 877
VpaK11BI GGWCC 1 cut(s) 970
XapI RAATTY 3 cut(s) 76, 612, 625
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 2 cut(s) 336, 1129
ZraI GACGTC 3 cut(s) 40, 1021, 1036
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.