Rw1G017790

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001428
Physical Location & Seq
Reverse (-)
39394008 .. 39398995
4988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017790.1

Sequence Viewer

Length: 771 bp
ATGTCAGGCCTAAATTCTGCTTATACATCTATCAAACGAAGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCATGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGTAGCTCACAGTGATGAGACTAGTCAAATTTATCACATATATACTTGTAGTTGGGAAGCTTATCTCCAAAAGAGCTTGATGAAGCAATTATGCTTGAGACTGTACTTTTTGGTAAATCTCCATACACCTAATAATCTGCCTATACATGCCTCTTCCTCATCCTCTCTATCAGCAAGACAATTGCTCAGAGAACAACAGGATGATGAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAACAAAAGAATCGAGCCAATGGAATTTGAGAGAAGGCTAGATGCAAAAAGTGCTTCACTTCCTTGTGAACCAGCACCAGATGATGAGAATGATGTGACTCTTCTTGTTCGGATGCCAAATGGCAGCCGCCTTAGCCGTCGCTTTCACAAATCTGACAGGCTTCAGATTTTCAGAGAAGTAAAATGCAACCACATTGTCCGTAGTCATCCGCTCAAATTGTTTGTCGATATATGCAACGTTTGCAAACTACACAGGGTCGCATTCACAGAGAAACCAGCTGGATATGCATTTTTAATTCTGAAAACATCAGTAGCTAAACCACTAGTTGAGTTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

256

Amino Acids

29.15

Weight (kDa)

8.42

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBX PF00789 172 - 204 3.6e-06 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 643
AciI CCGC 2 cut(s) 559, 641
AclI AACGTT 1 cut(s) 669
AcsI RAATTY 3 cut(s) 13, 168, 455
AcuI CTGAAG 3 cut(s) 87, 110, 578
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 1 cut(s) 421
AhlI ACTAGT 2 cut(s) 161, 754
AluBI AGCT 8 cut(s) 65, 146, 200, 216, 368, 404, 710, 746
AluI AGCT 8 cut(s) 65, 146, 200, 216, 368, 404, 710, 746
Alw26I GTCTC 2 cut(s) 152, 232
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 3 cut(s) 79, 404, 555
ApoI RAATTY 3 cut(s) 13, 168, 455
ArsI GACNNNNNNTTYG 2 cut(s) 639, 671
BbvI GCAGC 3 cut(s) 91, 391, 567
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 152, 232
BcuI ACTAGT 2 cut(s) 161, 754
BfaI CTAG 3 cut(s) 162, 470, 755
BisI GCNGC 4 cut(s) 80, 405, 556, 559
BlsI GCNGC 4 cut(s) 81, 406, 557, 560
BmsI GCATC 3 cut(s) 365, 463, 534
Bpu10I CCTNAGC 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bse1I ACTGG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 348
BseGI GGATG 5 cut(s) 299, 346, 356, 549, 637
BseJI GATNNNNATC 1 cut(s) 348
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 3 cut(s) 91, 391, 567
BshFI GGCC 1 cut(s) 9
BsmAI GTCTC 2 cut(s) 152, 232
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 1 cut(s) 9
BspACI CCGC 2 cut(s) 559, 641
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 643
BsrI ACTGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 152, 243
Bst6I CTCTTC 3 cut(s) 90, 298, 537
BstAPI GCANNNNNTGC 2 cut(s) 482, 672
BstDEI CTNAG 4 cut(s) 102, 326, 364, 563
BstF5I GGATG 5 cut(s) 299, 346, 356, 549, 637
BstMAI GTCTC 2 cut(s) 152, 232
BstMWI GCNNNNNNNGC 4 cut(s) 482, 564, 672, 716
BstNSI RCATGY 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 91, 391, 567
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 5 cut(s) 299, 346, 356, 549, 637
BtsIMutI CAGTG 1 cut(s) 157
Csp6I GTAC 1 cut(s) 244
CviAII CATG 3 cut(s) 107, 287, 398
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 4 cut(s) 102, 326, 364, 563
Eam1104I CTCTTC 3 cut(s) 90, 298, 537
EarI CTCTTC 3 cut(s) 90, 298, 537
Eco147I AGGCCT 1 cut(s) 9
Eco57I CTGAAG 3 cut(s) 87, 110, 578
EcoT22I ATGCAT 1 cut(s) 721
FaeI CATG 3 cut(s) 110, 290, 401
FatI CATG 3 cut(s) 106, 286, 397
Fnu4HI GCNGC 4 cut(s) 80, 405, 556, 559
FokI GGATG 5 cut(s) 286, 343, 353, 556, 624
Fsp4HI GCNGC 4 cut(s) 80, 405, 556, 559
FspBI CTAG 3 cut(s) 162, 470, 755
GluI GCNGC 4 cut(s) 80, 405, 556, 559
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 3 cut(s) 110, 290, 401
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 3 cut(s) 98, 441, 529
Hpy166II GTNNAC 2 cut(s) 433, 500
Hpy188I TCNGA 6 cut(s) 329, 543, 586, 597, 605, 732
Hpy8I GTNNAC 2 cut(s) 433, 500
Hpy99I CGWCG 1 cut(s) 573
HpyAV CCTTC 3 cut(s) 36, 415, 459
HpyCH4III ACNGT 2 cut(s) 152, 243
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 7 cut(s) 356, 407, 476, 618, 666, 675, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 482, 564, 672, 716
HpyF3I CTNAG 4 cut(s) 102, 326, 364, 563
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 3 cut(s) 110, 290, 401
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 9 cut(s) 116, 125, 323, 516, 522, 574, 670, 696, 720
Lsp1109I GCAGC 3 cut(s) 91, 391, 567
LweI GCATC 3 cut(s) 365, 463, 534
MaeI CTAG 3 cut(s) 162, 470, 755
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 1 cut(s) 526
MbiI CCGCTC 1 cut(s) 643
MboII GAAGA 5 cut(s) 51, 107, 116, 285, 524
MfeI CAATTG 1 cut(s) 320
MluCI AATT 8 cut(s) 13, 83, 168, 227, 320, 455, 647, 726
MlyI GAGTC 2 cut(s) 107, 523
MnlI CCTC 3 cut(s) 301, 307, 313
Mph1103I ATGCAT 1 cut(s) 721
MseI TTAA 1 cut(s) 725
MslI CAYNNNNRTG 2 cut(s) 111, 153
MspA1I CMGCKG 1 cut(s) 710
MunI CAATTG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 692
MwoI GCNNNNNNNGC 4 cut(s) 482, 564, 672, 716
NlaIII CATG 3 cut(s) 110, 290, 401
NmuCI GTSAC 1 cut(s) 526
NsiI ATGCAT 1 cut(s) 721
NspI RCATGY 1 cut(s) 290
PceI AGGCCT 1 cut(s) 9
PctI GAATGC 1 cut(s) 692
PfeI GAWTC 1 cut(s) 441
PkrI GCNGC 4 cut(s) 81, 406, 557, 560
PleI GAGTC 2 cut(s) 106, 523
PpsI GAGTC 2 cut(s) 106, 523
Psp1406I AACGTT 1 cut(s) 669
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 111, 153
SaqAI TTAA 1 cut(s) 725
SatI GCNGC 4 cut(s) 80, 405, 556, 559
SchI GAGTC 2 cut(s) 107, 523
SfaNI GCATC 3 cut(s) 365, 463, 534
SmiMI CAYNNNNRTG 2 cut(s) 111, 153
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
SpeI ACTAGT 2 cut(s) 161, 754
Sse9I AATT 8 cut(s) 13, 83, 168, 227, 320, 455, 647, 726
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 2 cut(s) 559, 641
SspMI CTAG 3 cut(s) 162, 470, 755
StuI AGGCCT 1 cut(s) 9
TaaI ACNGT 2 cut(s) 152, 243
TaiI ACGT 1 cut(s) 672
TaqI TCGA 2 cut(s) 444, 657
TasI AATT 8 cut(s) 13, 83, 168, 227, 320, 455, 647, 726
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 561
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 3 cut(s) 79, 404, 555
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 3 cut(s) 236, 401, 414
TspGWI ACGGA 1 cut(s) 620
TspRI CASTG 1 cut(s) 157
XapI RAATTY 3 cut(s) 13, 168, 455
XceI RCATGY 1 cut(s) 290
XspI CTAG 3 cut(s) 162, 470, 755
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.