Rw4G019570

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001428
Physical Location & Seq
Reverse (-)
42958321 .. 42965531
7211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019570.1

Sequence Viewer

Length: 1164 bp
ATGTGCAGAGACCTGATAAACAAGAACCCATCTCTAACACAAGACACAGTTCCACAAGAACATGGAGGCGATCTCAATGAAGCCGTGAATGCACATTTTAGGGAAGGAGATGTACACAGTACAAGTCCTTCATCTACTGCTCCCCCACAGTACAATTTCCCTCAAATGAGTAATCAGAATCAAGTAGCTCCACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATAGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGTGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATTTCCATACACTTTTTGTTCAATTCACTATCAAACAACAGATATGCCTTTAACAGACAACAGAAAACTGAATGTTACCATGGCCAAAAGTGGCGCCATGGATTCCAATCCTTATACCCTCAACGTCATGACCCCTATGGTCATGTTAGGGTTTTCTCAATCAATTTCGGCTCTTGAAGAGATTGGGACTGGAGTGTGGTCACCGATAAGAAAGGTTGCTCCAGGGAGACTTGGTCTCCATTGTCGGGAAAAAATGTTAATTTTAGATTCAAACATAATCGAACCCACGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

387

Amino Acids

42.4

Weight (kDa)

5.29

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1162
AccB1I GGYRCC 2 cut(s) 310, 962
AccIII TCCGGA 1 cut(s) 409
AclWI GGATC 1 cut(s) 680
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 3 cut(s) 579, 592, 869
AcuI CTGAAG 3 cut(s) 606, 762, 785
AcyI GRCGYC 2 cut(s) 435, 963
AfaI GTAC 5 cut(s) 114, 121, 152, 538, 703
AfiI CCNNNNNNNGG 4 cut(s) 197, 334, 560, 1114
AgsI TTSAA 9 cut(s) 235, 361, 476, 488, 495, 628, 891, 1046, 1140
AjnI CCWGG 5 cut(s) 224, 328, 553, 688, 1090
AluBI AGCT 7 cut(s) 188, 479, 491, 506, 667, 740, 829
AluI AGCT 7 cut(s) 188, 479, 491, 506, 667, 740, 829
Alw26I GTCTC 4 cut(s) 3, 845, 1090, 1109
AlwI GGATC 1 cut(s) 680
Aor13HI TCCGGA 1 cut(s) 409
AoxI GGCC 2 cut(s) 398, 951
ApeKI GCWGC 4 cut(s) 376, 479, 664, 754
ApoI RAATTY 3 cut(s) 579, 592, 869
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 965
AsuHPI GGTGA 2 cut(s) 309, 1062
BaeGI GKGCMC 1 cut(s) 313
BalI TGGCCA 1 cut(s) 953
BanI GGYRCC 2 cut(s) 310, 962
BarI GAAGNNNNNNTAC 4 cut(s) 96, 112, 128, 144
BbsI GAAGAC 1 cut(s) 635
BbvI GCAGC 4 cut(s) 388, 466, 676, 766
BccI CCATC 3 cut(s) 37, 322, 779
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 5 cut(s) 226, 330, 555, 690, 1092
BcoDI GTCTC 4 cut(s) 3, 845, 1090, 1109
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 966
BglII AGATCT 1 cut(s) 271
BisI GCNGC 4 cut(s) 377, 480, 665, 755
BlsI GCNGC 4 cut(s) 378, 481, 666, 756
BmcAI AGTACT 1 cut(s) 538
Bme1390I CCNGG 5 cut(s) 226, 330, 555, 690, 1092
BmiI GGNNCC 3 cut(s) 312, 348, 964
BmrFI CCNGG 5 cut(s) 226, 330, 555, 690, 1092
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 651
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 635
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpmI CTGGAG 2 cut(s) 1074, 1080
BpuEI CTTGAG 2 cut(s) 424, 869
BsaAI YACGTR 1 cut(s) 656
BsaBI GATNNNNATC 2 cut(s) 603, 975
BsaHI GRCGYC 2 cut(s) 435, 963
BsaI GGTCTC 2 cut(s) 3, 1109
BsaJI CCNNGG 4 cut(s) 328, 948, 966, 1091
BsaWI WCCGGW 2 cut(s) 409, 568
BsaXI ACNNNNNCTCC 6 cut(s) 729, 759, 1087, 1089, 1117, 1119
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 334, 560, 1114
Bse1I ACTGG 4 cut(s) 307, 346, 819, 1063
Bse3DI GCAATG 2 cut(s) 376, 457
Bse8I GATNNNNATC 2 cut(s) 603, 975
BseAI TCCGGA 1 cut(s) 409
BseBI CCWGG 5 cut(s) 226, 330, 555, 690, 1092
BseDI CCNNGG 4 cut(s) 328, 948, 966, 1091
BseGI GGATG 1 cut(s) 418
BseJI GATNNNNATC 2 cut(s) 603, 975
BseLI CCNNNNNNNGG 4 cut(s) 197, 334, 560, 1114
BseMI GCAATG 2 cut(s) 376, 457
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 4 cut(s) 307, 346, 819, 1063
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 4 cut(s) 388, 466, 676, 766
BsgI GTGCAG 3 cut(s) 25, 630, 840
BshFI GGCC 2 cut(s) 400, 953
BshNI GGYRCC 2 cut(s) 310, 962
BsiSI CCGG 2 cut(s) 410, 569
BslFI GGGAC 1 cut(s) 1069
BslI CCNNNNNNNGG 4 cut(s) 197, 334, 560, 1114
BsmAI GTCTC 4 cut(s) 3, 845, 1090, 1109
BsmFI GGGAC 1 cut(s) 1069
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 2 cut(s) 400, 953
Bso31I GGTCTC 2 cut(s) 3, 1109
Bsp1286I GDGCHC 1 cut(s) 313
Bsp13I TCCGGA 1 cut(s) 409
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 4 cut(s) 70, 271, 604, 685
Bsp19I CCATGG 2 cut(s) 948, 966
BspANI GGCC 2 cut(s) 400, 953
BspCNI CTCAG 1 cut(s) 401
BspEI TCCGGA 1 cut(s) 409
BspHI TCATGA 1 cut(s) 996
BspLI GGNNCC 3 cut(s) 312, 348, 964
BspPI GGATC 1 cut(s) 680
BspT107I GGYRCC 2 cut(s) 310, 962
BspTNI GGTCTC 2 cut(s) 3, 1109
BsrDI GCAATG 2 cut(s) 376, 457
BsrGI TGTACA 1 cut(s) 112
BsrI ACTGG 4 cut(s) 307, 346, 819, 1063
BssECI CCNNGG 4 cut(s) 328, 948, 966, 1091
BssMI GATC 4 cut(s) 70, 271, 604, 685
BssNI GRCGYC 2 cut(s) 435, 963
BssT1I CCWWGG 2 cut(s) 948, 966
Bst2UI CCWGG 5 cut(s) 226, 330, 555, 690, 1092
Bst4CI ACNGT 6 cut(s) 49, 119, 150, 257, 266, 536
Bst6I CTCTTC 2 cut(s) 765, 1041
BstACI GRCGYC 2 cut(s) 435, 963
BstAUI TGTACA 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 656
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 2 cut(s) 388, 777
BstDSI CCRYGG 2 cut(s) 948, 966
BstEII GGTNACC 1 cut(s) 1068
BstF5I GGATG 1 cut(s) 418
BstH2I RGCGCY 1 cut(s) 966
BstHHI GCGC 1 cut(s) 965
BstKTI GATC 4 cut(s) 73, 274, 607, 688
BstMAI GTCTC 4 cut(s) 3, 845, 1090, 1109
BstMBI GATC 4 cut(s) 70, 271, 604, 685
BstMWI GCNNNNNNNGC 2 cut(s) 89, 488
BstNI CCWGG 5 cut(s) 226, 330, 555, 690, 1092
BstPI GGTNACC 1 cut(s) 1068
BstSCI CCNGG 5 cut(s) 224, 328, 553, 688, 1090
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 4 cut(s) 388, 466, 676, 766
BstV2I GAAGAC 1 cut(s) 635
BstX2I RGATCY 2 cut(s) 271, 685
BstYI RGATCY 2 cut(s) 271, 685
BsuRI GGCC 2 cut(s) 400, 953
BtgI CCRYGG 2 cut(s) 948, 966
BtsCI GGATG 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 367
CciI TCATGA 1 cut(s) 996
CfoI GCGC 1 cut(s) 965
CseI GACGC 1 cut(s) 443
Csp6I GTAC 5 cut(s) 113, 120, 151, 537, 702
CviAII CATG 6 cut(s) 62, 705, 949, 967, 997, 1012
CviQI GTAC 5 cut(s) 113, 120, 151, 537, 702
DdeI CTNAG 2 cut(s) 388, 777
DinI GGCGCC 1 cut(s) 964
DpnI GATC 4 cut(s) 72, 273, 606, 687
DpnII GATC 4 cut(s) 70, 271, 604, 685
EaeI YGGCCR 1 cut(s) 951
Eam1104I CTCTTC 2 cut(s) 765, 1041
EarI CTCTTC 2 cut(s) 765, 1041
Eco130I CCWWGG 2 cut(s) 948, 966
Eco147I AGGCCT 1 cut(s) 400
Eco31I GGTCTC 2 cut(s) 3, 1109
Eco57I CTGAAG 3 cut(s) 606, 762, 785
Eco91I GGTNACC 1 cut(s) 1068
EcoO65I GGTNACC 1 cut(s) 1068
EcoRII CCWGG 5 cut(s) 224, 328, 553, 688, 1090
EcoT14I CCWWGG 2 cut(s) 948, 966
EgeI GGCGCC 1 cut(s) 964
EheI GGCGCC 1 cut(s) 964
ErhI CCWWGG 2 cut(s) 948, 966
FaeI CATG 6 cut(s) 65, 708, 952, 970, 1000, 1015
FaqI GGGAC 1 cut(s) 1069
FatI CATG 6 cut(s) 61, 704, 948, 966, 996, 1011
Fnu4HI GCNGC 4 cut(s) 377, 480, 665, 755
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 4 cut(s) 377, 480, 665, 755
GlaI GCGC 1 cut(s) 964
GluI GCNGC 4 cut(s) 377, 480, 665, 755
GsuI CTGGAG 2 cut(s) 1074, 1080
HaeII RGCGCY 1 cut(s) 966
HaeIII GGCC 2 cut(s) 400, 953
HapII CCGG 2 cut(s) 410, 569
HgaI GACGC 1 cut(s) 443
HhaI GCGC 1 cut(s) 965
Hin1I GRCGYC 2 cut(s) 435, 963
Hin1II CATG 6 cut(s) 65, 708, 952, 970, 1000, 1015
Hin6I GCGC 1 cut(s) 963
HinP1I GCGC 1 cut(s) 963
HindIII AAGCTT 2 cut(s) 489, 827
HinfI GANTC 6 cut(s) 178, 472, 679, 773, 971, 1136
HpaII CCGG 2 cut(s) 410, 569
HphI GGTGA 2 cut(s) 309, 1062
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 177, 522, 598
Hpy188III TCNNGA 8 cut(s) 390, 410, 441, 584, 683, 997, 1043, 1115
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 5 cut(s) 98, 138, 249, 330, 711
HpyCH4III ACNGT 6 cut(s) 49, 119, 150, 257, 266, 536
HpyCH4IV ACGT 3 cut(s) 655, 993, 1157
HpyCH4V TGCA 7 cut(s) 6, 92, 296, 529, 611, 664, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 488
HpyF3I CTNAG 2 cut(s) 388, 777
HpySE526I ACGT 3 cut(s) 655, 993, 1157
Hsp92I GRCGYC 2 cut(s) 435, 963
Hsp92II CATG 6 cut(s) 65, 708, 952, 970, 1000, 1015
HspAI GCGC 1 cut(s) 963
KasI GGCGCC 1 cut(s) 962
Kpn2I TCCGGA 1 cut(s) 409
Kzo9I GATC 4 cut(s) 70, 271, 604, 685
LmnI GCTCC 4 cut(s) 145, 193, 737, 1093
Lsp1109I GCAGC 4 cut(s) 388, 466, 676, 766
LweI GCATC 1 cut(s) 651
MaeII ACGT 3 cut(s) 655, 993, 1157
MaeIII GTNAC 4 cut(s) 260, 337, 943, 1068
MalI GATC 4 cut(s) 72, 273, 606, 687
MboI GATC 4 cut(s) 70, 271, 604, 685
MboII GAAGA 6 cut(s) 476, 599, 640, 782, 791, 1058
MflI RGATCY 2 cut(s) 271, 685
MhlI GDGCHC 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 953
MluNI TGGCCA 1 cut(s) 953
Mly113I GGCGCC 1 cut(s) 963
MlyI GAGTC 1 cut(s) 782
MnlI CCTC 7 cut(s) 59, 171, 328, 390, 448, 454, 998
Mox20I TGGCCA 1 cut(s) 953
MroI TCCGGA 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 471
MscI TGGCCA 1 cut(s) 953
MseI TTAA 3 cut(s) 299, 920, 1127
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 1 cut(s) 667
MspI CCGG 2 cut(s) 410, 569
MspR9I CCNGG 5 cut(s) 226, 330, 555, 690, 1092
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 5 cut(s) 226, 330, 555, 690, 1092
MwoI GCNNNNNNNGC 2 cut(s) 89, 488
NarI GGCGCC 1 cut(s) 963
NcoI CCATGG 2 cut(s) 948, 966
NdeII GATC 4 cut(s) 70, 271, 604, 685
NlaIII CATG 6 cut(s) 65, 708, 952, 970, 1000, 1015
NlaIV GGNNCC 3 cut(s) 312, 348, 964
NmuCI GTSAC 1 cut(s) 1068
PagI TCATGA 1 cut(s) 996
PceI AGGCCT 1 cut(s) 400
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 5 cut(s) 178, 472, 679, 971, 1136
PflFI GACNNNGTC 1 cut(s) 1101
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 4 cut(s) 378, 481, 666, 756
PleI GAGTC 1 cut(s) 781
PluTI GGCGCC 1 cut(s) 966
PpsI GAGTC 1 cut(s) 781
Ppu21I YACGTR 1 cut(s) 656
PsiI TTATAA 1 cut(s) 1162
Psp6I CCWGG 5 cut(s) 224, 328, 553, 688, 1090
PspEI GGTNACC 1 cut(s) 1068
PspGI CCWGG 5 cut(s) 224, 328, 553, 688, 1090
PspN4I GGNNCC 3 cut(s) 312, 348, 964
PsrI GAACNNNNNNTAC 2 cut(s) 330, 362
PsuI RGATCY 2 cut(s) 271, 685
PsyI GACNNNGTC 1 cut(s) 1101
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 5 cut(s) 114, 121, 152, 538, 703
RsaNI GTAC 5 cut(s) 113, 120, 151, 537, 702
SaqAI TTAA 3 cut(s) 299, 920, 1127
SatI GCNGC 4 cut(s) 377, 480, 665, 755
Sau3AI GATC 4 cut(s) 70, 271, 604, 685
ScaI AGTACT 1 cut(s) 538
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 5 cut(s) 226, 330, 555, 690, 1092
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 1 cut(s) 651
SfcI CTRYAG 1 cut(s) 351
SfoI GGCGCC 1 cut(s) 964
SmlI CTYRAG 2 cut(s) 439, 848
SmoI CTYRAG 2 cut(s) 439, 848
SseBI AGGCCT 1 cut(s) 400
SspDI GGCGCC 1 cut(s) 962
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 5 cut(s) 224, 328, 553, 688, 1090
StyI CCWWGG 2 cut(s) 948, 966
TaaI ACNGT 6 cut(s) 49, 119, 150, 257, 266, 536
TaiI ACGT 3 cut(s) 658, 996, 1160
TaqI TCGA 1 cut(s) 1149
TatI WGTACW 5 cut(s) 112, 119, 150, 536, 701
TfiI GAWTC 5 cut(s) 178, 472, 679, 971, 1136
Tru1I TTAA 3 cut(s) 299, 920, 1127
Tru9I TTAA 3 cut(s) 299, 920, 1127
TseFI GTSAC 1 cut(s) 1068
TseI GCWGC 4 cut(s) 376, 479, 664, 754
Tsp45I GTSAC 1 cut(s) 1068
TspDTI ATGAA 3 cut(s) 93, 120, 231
Tth111I GACNNNGTC 1 cut(s) 1101
XapI RAATTY 3 cut(s) 579, 592, 869
XmnI GAANNNNTTC 1 cut(s) 471
ZrmI AGTACT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.