Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001428

Physical Location & Seq

Genomic Coordinates Reverse (-)

32715231 .. 32717440

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG164500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAAGTTTTGGGTATAGAAGTTTGGCAAAGCATAGACGTCCTCAAGTTTGGTTCGATTTCTGGTTCGATTTCGAATTCTTCAAGCTTGGAACATGGAGGCGATCTCAATGAAGCCGTGAATGCACATTTTAGGGAAGGAGATGTACACAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTATAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGATGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGGTTCTTAATCTGTCTTTCTTTTTCTGGGAGGGATACTGGTATTGGGATGAAGAAGGAGGAACTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX UIM

Protein Analysis

207

Amino Acids

22.68

Weight (kDa)

4.56

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00752
fragaria_vesca	FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300
malus_domestica	MD01G1050500.v1.1
prunus_persica	Prupe.2G156600_v2.0.a1
pyrus_communis	pycom01g07530
rosa_chinensis	RchiOBHm_Chr1g0329331 RchiOBHm_Chr1g0352561 RchiOBHm_Chr3g0481331 RchiOBHm_Chr4g0427171
rosa_laevigata	RLG00000028330
rosa_multiflora	Rmu_sc0000147.1_g000024 Rmu_sc0000911.1_g000033 Rmu_sc0008564.1_g000023 Rmu_sc0008823.1_g000008 Rmu_sc0019045.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302630 Rroxscaffold_7G00169710 Rroxscaffold_7G00203150 Rroxscaffold_7G00213050
rosa_rugosa	Rorug01G0230100 Rorug04G0062700 Rorug04G0062800 Rorug04G0062900
rosa_samantha	Rh1AG202000 Rh1AG243600 Rh1BG214200 Rh1CG186900 Rh1CG226800 Rh1CG227100 Rh1DG240200 Rh2AG182200 Rh2DG188600 Rh3AG242000 Rh3DG289800 Rh4DG117700 Rh4DG164500 Rh6CG130000 Rh6CG255900 Rh7DG285300 Rh7DG364500
rosa_wichuraiana	Rw0G009430 Rw1G017790 Rw1G021300 Rw3G029580 Rw4G002460 Rw4G019570 Rw6G016170 Rw7G038890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	235
AccIII	TCCGGA	1 cut(s)	334
AcsI	RAATTY	3 cut(s)	76, 504, 517
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	2 cut(s)	39, 360
AfaI	GTAC	2 cut(s)	147, 463
AfiI	CCNNNNNNNGG	2 cut(s)	259, 485
AgsI	TTSAA	7 cut(s)	84, 160, 286, 401, 413, 420, 553
AjnI	CCWGG	2 cut(s)	253, 478
AluBI	AGCT	4 cut(s)	87, 404, 416, 431
AluI	AGCT	4 cut(s)	87, 404, 416, 431
Aor13HI	TCCGGA	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	301, 404
ApoI	RAATTY	3 cut(s)	76, 504, 517
Asp700I	GAANNNNTTC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	234
AsuII	TTCGAA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	235
BarI	GAAGNNNNNNTAC	2 cut(s)	129, 161
BbvI	GCAGC	2 cut(s)	313, 391
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	255, 480
BciVI	GTATCC	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	302, 405
BlsI	GCNGC	2 cut(s)	303, 406
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	255, 480
BmiI	GGNNCC	2 cut(s)	237, 273
BmrFI	CCNGG	2 cut(s)	255, 480
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
Bpu14I	TTCGAA	1 cut(s)	74
BpuEI	CTTGAG	2 cut(s)	29, 349
BsaBI	GATNNNNATC	1 cut(s)	528
BsaHI	GRCGYC	2 cut(s)	39, 360
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	334, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 485
Bse1I	ACTGG	3 cut(s)	232, 271, 596
Bse3DI	GCAATG	2 cut(s)	301, 382
Bse8I	GATNNNNATC	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	255, 480
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	343, 607
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	259, 485
BseMI	GCAATG	2 cut(s)	301, 382
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	3 cut(s)	232, 271, 596
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	313, 391
BsgI	GTGCAG	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	335, 494
BslI	CCNNNNNNNGG	2 cut(s)	259, 485
BsmI	GAATGC	1 cut(s)	127
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp13I	TCCGGA	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	103, 196, 529
BspCNI	CTCAG	1 cut(s)	326
BspEI	TCCGGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	237, 273
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	301, 382
BsrGI	TGTACA	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	232, 271, 596
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	103, 196, 529
BssNI	GRCGYC	2 cut(s)	39, 360
Bst2UI	CCWGG	2 cut(s)	255, 480
Bst4CI	ACNGT	2 cut(s)	182, 461
BstACI	GRCGYC	2 cut(s)	39, 360
BstAUI	TGTACA	1 cut(s)	145
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	343, 607
BstKTI	GATC	3 cut(s)	106, 199, 532
BstMBI	GATC	3 cut(s)	103, 196, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 413
BstNI	CCWGG	2 cut(s)	255, 480
BstSCI	CCNGG	2 cut(s)	253, 478
BstSFI	CTRYAG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	313, 391
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	343, 607
Cac8I	GCNNGC	1 cut(s)	292
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	146, 462
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	8 cut(s)	87, 116, 163, 304, 404, 416, 431, 490
CviKI_1	RGCY	8 cut(s)	87, 116, 163, 304, 404, 416, 431, 490
CviQI	GTAC	2 cut(s)	146, 462
DdeI	CTNAG	1 cut(s)	313
DpnI	GATC	3 cut(s)	105, 198, 531
DpnII	GATC	3 cut(s)	103, 196, 529
Eco57I	CTGAAG	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	253, 478
FaeI	CATG	1 cut(s)	98
FaiI	YATR	5 cut(s)	17, 35, 96, 189, 372
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	302, 405
FokI	GGATG	2 cut(s)	350, 614
Fsp4HI	GCNGC	2 cut(s)	302, 405
GluI	GCNGC	2 cut(s)	302, 405
HapII	CCGG	2 cut(s)	335, 494
HgaI	GACGC	1 cut(s)	368
Hin1I	GRCGYC	2 cut(s)	39, 360
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	2 cut(s)	85, 414
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	2 cut(s)	335, 494
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	210, 447, 523
Hpy188III	TCNNGA	4 cut(s)	315, 335, 366, 509
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	5 cut(s)	131, 174, 255, 547, 602
HpyCH4III	ACNGT	2 cut(s)	182, 461
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	125, 221, 454, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 413
HpyF3I	CTNAG	1 cut(s)	313
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	2 cut(s)	39, 360
Hsp92II	CATG	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	103, 196, 529
Lsp1109I	GCAGC	2 cut(s)	313, 391
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	105, 198, 531
MboI	GATC	3 cut(s)	103, 196, 529
MboII	GAAGA	4 cut(s)	72, 401, 524, 617
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	4 cut(s)	76, 330, 504, 517
MnlI	CCTC	7 cut(s)	53, 92, 253, 373, 379, 577, 605
MroI	TCCGGA	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	2 cut(s)	224, 561
MspI	CCGG	2 cut(s)	335, 494
MspR9I	CCNGG	2 cut(s)	255, 480
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	255, 480
MwoI	GCNNNNNNNGC	2 cut(s)	122, 413
NdeII	GATC	3 cut(s)	103, 196, 529
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	237, 273
NspV	TTCGAA	1 cut(s)	74
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	303, 406
Psp6I	CCWGG	2 cut(s)	253, 478
PspGI	CCWGG	2 cut(s)	253, 478
PspN4I	GGNNCC	2 cut(s)	237, 273
PsrI	GAACNNNNNNTAC	2 cut(s)	255, 287
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	2 cut(s)	147, 463
RsaNI	GTAC	2 cut(s)	146, 462
SaqAI	TTAA	2 cut(s)	224, 561
SatI	GCNGC	2 cut(s)	302, 405
Sau3AI	GATC	3 cut(s)	103, 196, 529
ScaI	AGTACT	1 cut(s)	463
ScrFI	CCNGG	2 cut(s)	255, 480
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	9 cut(s)	42, 89, 247, 264, 283, 406, 418, 433, 558
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	44, 364
SmoI	CTYRAG	2 cut(s)	44, 364
Sse9I	AATT	4 cut(s)	76, 330, 504, 517
StyD4I	CCNGG	2 cut(s)	253, 478
TaaI	ACNGT	2 cut(s)	182, 461
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	56, 68, 74
TasI	AATT	4 cut(s)	76, 330, 504, 517
TatI	WGTACW	2 cut(s)	145, 461
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	224, 561
Tru9I	TTAA	2 cut(s)	224, 561
TseI	GCWGC	2 cut(s)	301, 404
TspDTI	ATGAA	3 cut(s)	126, 156, 618
XapI	RAATTY	3 cut(s)	76, 504, 517
XmnI	GAANNNNTTC	1 cut(s)	396
ZraI	GACGTC	1 cut(s)	40
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.