Rh2AG182200

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001428
Physical Location & Seq
Reverse (-)
17576459 .. 17602359
25901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG182200.1

Sequence Viewer

Length: 993 bp
ATGGCTTCTGCACAATCTCACACATACATTGTCTACATGGATTCTTCAGCCATGCCCAAAGCCTTCTTTGATCACCACAAATGGTATTTGGCAACCCTTTCATCTCTATCAGACGGTGTCAACGCTGAGGCAACTACCAGACCTTCGATCTCTTCTCCAACAAGCTGCGACAGCTCAGATACACTTTGTGGTACAAGTCCTTCATCTACTGCTCCCCCACAGTACAATTTCCCTCAAATGAGTAATCAGAATCAAGTAGCTCTACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGAGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAGGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAAGAATCAAGATCCAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATTTCCATACACTTTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

330

Amino Acids

35.9

Weight (kDa)

4.79

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 481
AclWI GGATC 1 cut(s) 752
AcsI RAATTY 3 cut(s) 651, 664, 971
AcuI CTGAAG 4 cut(s) 30, 678, 834, 857
AcyI GRCGYC 1 cut(s) 507
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 4 cut(s) 193, 224, 610, 775
AfiI CCNNNNNNNGG 2 cut(s) 406, 632
AgsI TTSAA 6 cut(s) 307, 433, 548, 560, 567, 700
AjnI CCWGG 4 cut(s) 296, 400, 625, 760
Alw26I GTCTC 1 cut(s) 947
AlwI GGATC 1 cut(s) 752
AlwNI CAGNNNCTG 1 cut(s) 497
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 5 cut(s) 165, 448, 551, 736, 826
ApoI RAATTY 3 cut(s) 651, 664, 971
Asp700I GAANNNNTTC 1 cut(s) 543
AsuHPI GGTGA 2 cut(s) 65, 381
BaeGI GKGCMC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 382
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BbsI GAAGAC 1 cut(s) 707
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 5 cut(s) 152, 460, 538, 748, 838
BccI CCATC 2 cut(s) 394, 851
BciT130I CCWGG 4 cut(s) 298, 402, 627, 762
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 947
BfmI CTRYAG 1 cut(s) 423
BglII AGATCT 1 cut(s) 343
BisI GCNGC 5 cut(s) 166, 449, 552, 737, 827
BlsI GCNGC 5 cut(s) 167, 450, 553, 738, 828
BmcAI AGTACT 1 cut(s) 610
Bme1390I CCNGG 4 cut(s) 298, 402, 627, 762
BmiI GGNNCC 2 cut(s) 384, 420
BmrFI CCNGG 4 cut(s) 298, 402, 627, 762
BmsI GCATC 1 cut(s) 723
BpiI GAAGAC 1 cut(s) 707
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 496, 971
BsaAI YACGTR 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 400
BsaWI WCCGGW 2 cut(s) 481, 640
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 632
Bse1I ACTGG 2 cut(s) 379, 891
Bse3DI GCAATG 2 cut(s) 448, 529
Bse8I GATNNNNATC 1 cut(s) 675
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 4 cut(s) 298, 402, 627, 762
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 1 cut(s) 490
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 2 cut(s) 406, 632
BseMI GCAATG 2 cut(s) 448, 529
BseMII CTCAG 4 cut(s) 117, 189, 405, 474
BseNI ACTGG 2 cut(s) 379, 891
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 5 cut(s) 152, 460, 538, 748, 838
BsgI GTGCAG 2 cut(s) 702, 942
BshFI GGCC 1 cut(s) 472
BshNI GGYRCC 1 cut(s) 382
BsiSI CCGG 2 cut(s) 482, 641
BslI CCNNNNNNNGG 2 cut(s) 406, 632
BsmAI GTCTC 1 cut(s) 947
BsnI GGCC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 385
Bsp13I TCCGGA 1 cut(s) 481
Bsp143I GATC 5 cut(s) 70, 147, 343, 676, 757
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 4 cut(s) 118, 188, 406, 473
BspEI TCCGGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 384, 420
BspPI GGATC 1 cut(s) 752
BspT107I GGYRCC 1 cut(s) 382
BsrDI GCAATG 2 cut(s) 448, 529
BsrI ACTGG 2 cut(s) 379, 891
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 5 cut(s) 70, 147, 343, 676, 757
BssNI GRCGYC 1 cut(s) 507
Bst2UI CCWGG 4 cut(s) 298, 402, 627, 762
Bst4CI ACNGT 6 cut(s) 116, 222, 329, 338, 608, 899
Bst6I CTCTTC 2 cut(s) 157, 837
BstACI GRCGYC 1 cut(s) 507
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 5 cut(s) 126, 175, 414, 460, 849
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 5 cut(s) 73, 150, 346, 679, 760
BstMAI GTCTC 1 cut(s) 947
BstMBI GATC 5 cut(s) 70, 147, 343, 676, 757
BstMWI GCNNNNNNNGC 2 cut(s) 171, 560
BstNI CCWGG 4 cut(s) 298, 402, 627, 762
BstSCI CCNGG 4 cut(s) 296, 400, 625, 760
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 385
BstV1I GCAGC 5 cut(s) 152, 460, 538, 748, 838
BstV2I GAAGAC 1 cut(s) 707
BstX2I RGATCY 2 cut(s) 343, 757
BstYI RGATCY 2 cut(s) 343, 757
BsuRI GGCC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 904
Cac8I GCNNGC 1 cut(s) 439
CaiI CAGNNNCTG 1 cut(s) 497
CseI GACGC 1 cut(s) 515
Csp6I GTAC 4 cut(s) 192, 223, 609, 774
CviAII CATG 3 cut(s) 37, 52, 777
CviQI GTAC 4 cut(s) 192, 223, 609, 774
DdeI CTNAG 5 cut(s) 126, 175, 414, 460, 849
DpnI GATC 5 cut(s) 72, 149, 345, 678, 759
DpnII GATC 5 cut(s) 70, 147, 343, 676, 757
DraIII CACNNNGTG 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 157, 837
EarI CTCTTC 2 cut(s) 157, 837
Eco147I AGGCCT 1 cut(s) 472
Eco57I CTGAAG 4 cut(s) 30, 678, 834, 857
EcoRII CCWGG 4 cut(s) 296, 400, 625, 760
FaeI CATG 3 cut(s) 40, 55, 780
FaiI YATR 8 cut(s) 25, 38, 53, 519, 771, 778, 947, 979
FatI CATG 3 cut(s) 36, 51, 776
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 5 cut(s) 166, 449, 552, 737, 827
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 5 cut(s) 166, 449, 552, 737, 827
GluI GCNGC 5 cut(s) 166, 449, 552, 737, 827
HaeIII GGCC 1 cut(s) 472
HapII CCGG 2 cut(s) 482, 641
HgaI GACGC 1 cut(s) 515
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 3 cut(s) 40, 55, 780
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HindIII AAGCTT 2 cut(s) 561, 913
HinfI GANTC 5 cut(s) 41, 250, 544, 751, 845
HpaII CCGG 2 cut(s) 482, 641
HphI GGTGA 2 cut(s) 65, 381
Hpy166II GTNNAC 2 cut(s) 34, 121
Hpy188I TCNGA 6 cut(s) 112, 178, 249, 357, 594, 670
Hpy188III TCNNGA 5 cut(s) 462, 482, 513, 656, 755
Hpy8I GTNNAC 2 cut(s) 34, 121
HpyAV CCTTC 6 cut(s) 73, 153, 210, 321, 402, 783
HpyCH4III ACNGT 6 cut(s) 116, 222, 329, 338, 608, 899
HpyCH4IV ACGT 1 cut(s) 727
HpyCH4V TGCA 6 cut(s) 11, 368, 601, 683, 736, 959
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 560
HpyF3I CTNAG 5 cut(s) 126, 175, 414, 460, 849
HpySE526I ACGT 1 cut(s) 727
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 3 cut(s) 40, 55, 780
Kpn2I TCCGGA 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 5 cut(s) 70, 147, 343, 676, 757
LmnI GCTCC 2 cut(s) 217, 809
Lsp1109I GCAGC 5 cut(s) 152, 460, 538, 748, 838
LweI GCATC 1 cut(s) 723
MaeII ACGT 1 cut(s) 727
MaeIII GTNAC 2 cut(s) 332, 409
MalI GATC 5 cut(s) 72, 149, 345, 678, 759
MboI GATC 5 cut(s) 70, 147, 343, 676, 757
MboII GAAGA 7 cut(s) 36, 144, 548, 671, 712, 854, 863
MflI RGATCY 2 cut(s) 343, 757
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 7 cut(s) 226, 477, 651, 664, 830, 942, 971
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 7 cut(s) 121, 243, 400, 409, 462, 520, 526
MroI TCCGGA 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 900
MspA1I CMGCKG 1 cut(s) 739
MspI CCGG 2 cut(s) 482, 641
MspR9I CCNGG 4 cut(s) 298, 402, 627, 762
MvaI CCWGG 4 cut(s) 298, 402, 627, 762
MwoI GCNNNNNNNGC 2 cut(s) 171, 560
NdeII GATC 5 cut(s) 70, 147, 343, 676, 757
NlaIII CATG 3 cut(s) 40, 55, 780
NlaIV GGNNCC 2 cut(s) 384, 420
PceI AGGCCT 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 4 cut(s) 41, 250, 544, 751
PflFI GACNNNGTC 1 cut(s) 116
PfoI TCCNGGA 1 cut(s) 760
PkrI GCNGC 5 cut(s) 167, 450, 553, 738, 828
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
Ppu21I YACGTR 1 cut(s) 728
Psp6I CCWGG 4 cut(s) 296, 400, 625, 760
PspGI CCWGG 4 cut(s) 296, 400, 625, 760
PspN4I GGNNCC 2 cut(s) 384, 420
PsrI GAACNNNNNNTAC 2 cut(s) 402, 434
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 2 cut(s) 343, 757
PsyI GACNNNGTC 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 739
RsaI GTAC 4 cut(s) 193, 224, 610, 775
RsaNI GTAC 4 cut(s) 192, 223, 609, 774
RseI CAYNNNNRTG 1 cut(s) 900
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 5 cut(s) 166, 449, 552, 737, 827
Sau3AI GATC 5 cut(s) 70, 147, 343, 676, 757
ScaI AGTACT 1 cut(s) 610
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 4 cut(s) 298, 402, 627, 762
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 2 cut(s) 511, 950
SmoI CTYRAG 2 cut(s) 511, 950
Sse9I AATT 7 cut(s) 226, 477, 651, 664, 830, 942, 971
SseBI AGGCCT 1 cut(s) 472
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 4 cut(s) 296, 400, 625, 760
TaaI ACNGT 6 cut(s) 116, 222, 329, 338, 608, 899
TaiI ACGT 1 cut(s) 730
TaqI TCGA 1 cut(s) 146
TasI AATT 7 cut(s) 226, 477, 651, 664, 830, 942, 971
TatI WGTACW 3 cut(s) 222, 608, 773
TfiI GAWTC 4 cut(s) 41, 250, 544, 751
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TscAI CASTG 1 cut(s) 904
TseI GCWGC 5 cut(s) 165, 448, 551, 736, 826
TspDTI ATGAA 3 cut(s) 90, 192, 303
TspRI CASTG 1 cut(s) 904
Tth111I GACNNNGTC 1 cut(s) 116
XapI RAATTY 3 cut(s) 651, 664, 971
XcmI CCANNNNNNNNNTGG 1 cut(s) 984
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.