Rw3G029580

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001428
Physical Location & Seq
Reverse (-)
45824529 .. 45830044
5516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029580.1

Sequence Viewer

Length: 960 bp
ATGAGATTTGAATTCTCAAGGCCCCTTCTCTCTCTCTCTAACTCTCTCTGTACTTGCGCTTCTACTAGTCTAGGGTTACAACTAGTGGGAAGTGTGTGTGATTTCTTGAGCTATATCGGTCTAGGCAATAATGAACATGAAGAGAAACAAATCTTAGAAGCTGAAATGGGTTCTCCGAATGTGCGAAACAGTACTCCCAATGAATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGCTGAATGACAGGAATCAAGATCCAGGAGTTTATAGTACAAGGAAGCAAGGAAGGTCATCAAAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGTAGCTCACAGTGATATGACTAGTCAAATTTATCACATATATACTTGTAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACCTAATAATCTGCCTATACATGCCTCTTCCTCATCCTCTCTACCAGCAAGGCAATTGCTCAGAGAACAACAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAACAAAAGAATCGAGCCAATGGAATTTGAGAGAAGGCTAGATGCAAAAAGTGCTTCACTTCCTTGTGAACCAGCACCAGATGATGAGAATGCTGTGACTCTTCTTGTTCGGATGCCAAATGGCAGCCGCCTTAGCCGTCACTTTCGCAAATCTGACAGGCTTCAGCATTTAGACAACAGCAAGCATATAAGCCCCTACGACAGTTTTTTGGTATTGTCTGATCCATGTATCAGACGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

319

Amino Acids

35.82

Weight (kDa)

6.5

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 844
AclWI GGATC 2 cut(s) 299, 932
AcsI RAATTY 5 cut(s) 11, 234, 247, 462, 740
AcuI CTGAAG 4 cut(s) 261, 381, 404, 863
AfaI GTAC 3 cut(s) 52, 193, 322
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 3 cut(s) 11, 283, 706
AhlI ACTAGT 3 cut(s) 65, 82, 455
AjnI CCWGG 2 cut(s) 208, 307
AluBI AGCT 9 cut(s) 111, 161, 286, 359, 440, 494, 510, 653, 689
AluI AGCT 9 cut(s) 111, 161, 286, 359, 440, 494, 510, 653, 689
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 2 cut(s) 299, 932
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 3 cut(s) 373, 689, 840
ApoI RAATTY 5 cut(s) 11, 234, 247, 462, 740
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 21
BaeI ACNNNNGTAYC 2 cut(s) 617, 650
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
BbvI GCAGC 3 cut(s) 385, 676, 852
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 837
BciT130I CCWGG 2 cut(s) 210, 309
BcoDI GTCTC 1 cut(s) 526
BcuI ACTAGT 3 cut(s) 65, 82, 455
BfaI CTAG 6 cut(s) 66, 71, 83, 122, 456, 755
BisI GCNGC 4 cut(s) 374, 690, 841, 844
BlsI GCNGC 4 cut(s) 375, 691, 842, 845
BmcAI AGTACT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 210, 309
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 210, 309
BmsI GCATC 3 cut(s) 650, 748, 819
Bpu10I CCTNAGC 1 cut(s) 848
BpuEI CTTGAG 2 cut(s) 127, 550
BsaBI GATNNNNATC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 2 cut(s) 210, 309
BseGI GGATG 3 cut(s) 593, 641, 834
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 634
BseNI ACTGG 1 cut(s) 438
BseXI GCAGC 3 cut(s) 385, 676, 852
BsgI GTGCAG 2 cut(s) 285, 521
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 526
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 259, 304, 937
BspACI CCGC 1 cut(s) 844
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 633
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 2 cut(s) 299, 932
BsrI ACTGG 1 cut(s) 438
BssMI GATC 3 cut(s) 259, 304, 937
Bst2UI CCWGG 2 cut(s) 210, 309
Bst4CI ACNGT 4 cut(s) 191, 446, 633, 920
Bst6I CTCTTC 4 cut(s) 135, 384, 592, 822
BstAPI GCANNNNNTGC 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 899
BstDEI CTNAG 5 cut(s) 154, 396, 620, 649, 848
BstF5I GGATG 3 cut(s) 593, 641, 834
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 262, 307, 940
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 3 cut(s) 259, 304, 937
BstMWI GCNNNNNNNGC 2 cut(s) 767, 849
BstNI CCWGG 2 cut(s) 210, 309
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 208, 307
BstV1I GCAGC 3 cut(s) 385, 676, 852
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 3 cut(s) 593, 641, 834
BtsIMutI CAGTG 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 899
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 3 cut(s) 51, 192, 321
CviAII CATG 4 cut(s) 137, 581, 683, 942
CviQI GTAC 3 cut(s) 51, 192, 321
DdeI CTNAG 5 cut(s) 154, 396, 620, 649, 848
DpnI GATC 3 cut(s) 261, 306, 939
DpnII GATC 3 cut(s) 259, 304, 937
Eam1104I CTCTTC 4 cut(s) 135, 384, 592, 822
EarI CTCTTC 4 cut(s) 135, 384, 592, 822
Eco57I CTGAAG 4 cut(s) 261, 381, 404, 863
EcoO109I RGGNCCY 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 208, 307
FaeI CATG 4 cut(s) 140, 584, 686, 945
FatI CATG 4 cut(s) 136, 580, 682, 941
Fnu4HI GCNGC 4 cut(s) 374, 690, 841, 844
FokI GGATG 3 cut(s) 580, 628, 841
Fsp4HI GCNGC 4 cut(s) 374, 690, 841, 844
FspBI CTAG 6 cut(s) 66, 71, 83, 122, 456, 755
GlaI GCGC 1 cut(s) 58
GluI GCNGC 4 cut(s) 374, 690, 841, 844
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 224
HhaI GCGC 1 cut(s) 59
Hin1II CATG 4 cut(s) 140, 584, 686, 945
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 5 cut(s) 203, 298, 392, 726, 814
HpaII CCGG 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 718, 785
Hpy188I TCNGA 7 cut(s) 177, 253, 623, 828, 871, 937, 950
Hpy188III TCNNGA 3 cut(s) 106, 239, 302
Hpy8I GTNNAC 2 cut(s) 718, 785
HpyAV CCTTC 4 cut(s) 35, 330, 700, 744
HpyCH4III ACNGT 4 cut(s) 191, 446, 633, 920
HpyCH4V TGCA 5 cut(s) 266, 538, 641, 692, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 767, 849
HpyF3I CTNAG 5 cut(s) 154, 396, 620, 649, 848
Hsp92II CATG 4 cut(s) 140, 584, 686, 945
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 3 cut(s) 259, 304, 937
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 3 cut(s) 385, 676, 852
LweI GCATC 3 cut(s) 650, 748, 819
MaeI CTAG 6 cut(s) 66, 71, 83, 122, 456, 755
MaeIII GTNAC 3 cut(s) 75, 811, 854
MalI GATC 3 cut(s) 261, 306, 939
MboI GATC 3 cut(s) 259, 304, 937
MboII GAAGA 6 cut(s) 152, 254, 401, 410, 579, 809
MfeI CAATTG 1 cut(s) 614
MflI RGATCY 1 cut(s) 304
MluCI AATT 8 cut(s) 11, 234, 247, 377, 462, 521, 614, 740
MlyI GAGTC 2 cut(s) 401, 808
MnlI CCTC 3 cut(s) 595, 601, 607
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 210, 309
MunI CAATTG 1 cut(s) 614
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 2 cut(s) 210, 309
MwoI GCNNNNNNNGC 2 cut(s) 767, 849
NdeII GATC 3 cut(s) 259, 304, 937
NlaIII CATG 4 cut(s) 140, 584, 686, 945
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 2 cut(s) 811, 854
NspI RCATGY 1 cut(s) 584
PctI GAATGC 1 cut(s) 811
PfeI GAWTC 3 cut(s) 203, 298, 726
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 4 cut(s) 375, 691, 842, 845
PleI GAGTC 2 cut(s) 400, 808
PpsI GAGTC 2 cut(s) 400, 808
Psp6I CCWGG 2 cut(s) 208, 307
PspGI CCWGG 2 cut(s) 208, 307
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 3 cut(s) 52, 193, 322
RsaNI GTAC 3 cut(s) 51, 192, 321
SatI GCNGC 4 cut(s) 374, 690, 841, 844
Sau3AI GATC 3 cut(s) 259, 304, 937
Sau96I GGNCC 1 cut(s) 21
ScaI AGTACT 1 cut(s) 193
SchI GAGTC 2 cut(s) 401, 808
ScrFI CCNGG 2 cut(s) 210, 309
SfaNI GCATC 3 cut(s) 650, 748, 819
SmlI CTYRAG 3 cut(s) 16, 106, 529
SmoI CTYRAG 3 cut(s) 16, 106, 529
SpeI ACTAGT 3 cut(s) 65, 82, 455
Sse9I AATT 8 cut(s) 11, 234, 247, 377, 462, 521, 614, 740
SsiI CCGC 1 cut(s) 844
SspMI CTAG 6 cut(s) 66, 71, 83, 122, 456, 755
StyD4I CCNGG 2 cut(s) 208, 307
TaaI ACNGT 4 cut(s) 191, 446, 633, 920
TaqI TCGA 1 cut(s) 729
TaqII GACCGA 1 cut(s) 107
TasI AATT 8 cut(s) 11, 234, 247, 377, 462, 521, 614, 740
TatI WGTACW 3 cut(s) 50, 191, 320
TauI GCSGC 1 cut(s) 846
TfiI GAWTC 3 cut(s) 203, 298, 726
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 2 cut(s) 811, 854
TseI GCWGC 3 cut(s) 373, 689, 840
Tsp45I GTSAC 2 cut(s) 811, 854
TspDTI ATGAA 5 cut(s) 147, 153, 216, 686, 699
TspRI CASTG 1 cut(s) 451
XapI RAATTY 5 cut(s) 11, 234, 247, 462, 740
XceI RCATGY 1 cut(s) 584
XspI CTAG 6 cut(s) 66, 71, 83, 122, 456, 755
ZrmI AGTACT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.