Prupe.2G156600_v2.0.a1

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001428
Physical Location & Seq
Reverse (-)
21003935 .. 21008909
4975 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G156600.1

Sequence Viewer

Length: 1506 bp
ATGGCGAGCCCCACGCAGGACATGATCGACTCATACATGAGCATCACCGGCGCCTCTCACTCACTCGCGCTGCGAAAGCTTGAGGAATATGGAGGCAATCTCAATGAAGCCGTGAATGCACATTTTAGTGGTGGAGATAGAGACTTTACAAATCCGGGGTCTGCTGCTACCCCACAATACAATTTCACTCATATGAGCGGTCAGAATCAAGTTGCACCTCATGCTGTCCCCCCATACAATTTCCCTCGTATGAGTTCGCAGAATCAAGTTGCACCACAAGGAGTTGTACCACTTCTCTCTGCTGCTAGGAGTTTCAGGCCATCATTGCTATTTGATCCTAGTTACAGTAGGGATCTCTTTAACCGGATCGGTTCTGCATTTACTGGTCGTGCACCAGTAAGTTCACATCCAGGAGTTGTGGGGGGGTTTCCTGTAGATTTAAACAGAGGGAATGATTATCCTCATCTCTCAGGACAGAGGCCTACCATTCAGGACATGACAGGAAATCCACATGGCAATGATGTGGAGGAAGAAATGATTCGAGCTGCTATTGAGGCTTCAAAACGAGAGGCTGAAGTGGCTTATCTGAATACGCAAACCAGGGCTCTCAATGTTTCTCCTGTTAATGGACTTCCAGGAAATCAAACTCACCAAGATGATGATGATGATTTTGATCGTGCACTTTCATTGTCCCTCAAGACAGCAGAACAAGAGAAAGCGATACGTGAGGAGAAAAGGAAAGACAGGAATCCCGAACTGGCATGGAAGCGAGGAAGGTCATTGCACCAAAATGGAGCTGAATTTGTAGAACAGAAACAAGTGAGTCAAGAGTTGAAACGTGATGCTGGTAAAAATCTTCAGCTGGGTAGCCTGGACGTTCATTGTGAAGAGTTAGGCAGCATTTCTTCCAAAGAGCTCGACGAAGCAATAATGCTTGAGACTGCACTTTTTGGCAAATCTTCACATGCAACTAATTTGCCAAGTCGTCCAAATATAAATTTGGGTCCTAATATGCAGCCTGTACATGGCCCCTCATCATCTGCTCCAACAACAAGACAATTGCTAAGACAACAACAGGATGATGAGTATCTTGCATCCATCTTGGCTGATAAAGAAAAGGAAATGCATGGTGTCAATGATCCTGGAACTTGTCACTTAAAGGGAGTCAAATCTGACAACAAAAAGATCAATACATTGGAAGGTGAGCGCATGCTAGCTGCAAAAAGTGCTTCACTTCCTTGCGAACCAGCATCAGATGATGAGAATGCTGTGACTCTTCTGGTTAAGGTGCCAAATGGCAGCCGCCTTAGCCGCCGCTTTCATAAATTTAACAAGCTTCAGATTCTTTTTGACTTCATAGATGTTGGTGGAGTGGTGAAGCCTGGAACATACAGAGTGGTGAGGTCATATCCTCGGCGTGCGTTTACTCTTGATGACAGCTTATTAACATTGAGCGAAGTTGGATTGACGAATAAACAAGAAGCCTTGTTTCTGGAATTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

502

Amino Acids

55.06

Weight (kDa)

6.04

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 50, 1288
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 198, 1303, 1312, 1315
AclWI GGATC 4 cut(s) 329, 360, 374, 1133
AcsI RAATTY 3 cut(s) 800, 997, 1325
AcuI CTGAAG 3 cut(s) 594, 842, 1322
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 288, 1023
AfiI CCNNNNNNNGG 3 cut(s) 16, 626, 1025
AgsI TTSAA 2 cut(s) 561, 835
AjnI CCWGG 6 cut(s) 409, 599, 634, 870, 1141, 1381
AluBI AGCT 8 cut(s) 79, 545, 797, 862, 916, 1217, 1336, 1440
AluI AGCT 8 cut(s) 79, 545, 797, 862, 916, 1217, 1336, 1440
Alw21I GWGCWC 3 cut(s) 394, 682, 918
Alw26I GTCTC 2 cut(s) 135, 932
Alw44I GTGCAC 2 cut(s) 390, 678
AlwI GGATC 4 cut(s) 329, 360, 374, 1133
AoxI GGCC 3 cut(s) 317, 479, 1027
ApaLI GTGCAC 2 cut(s) 390, 678
ApeKI GCWGC 8 cut(s) 70, 164, 302, 545, 897, 1015, 1217, 1299
ApoI RAATTY 3 cut(s) 800, 997, 1325
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 3 cut(s) 53, 70, 1209
AspS9I GGNCC 2 cut(s) 1004, 1028
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 5 cut(s) 37, 641, 1214, 1387, 1411
AsuNHI GCTAGC 1 cut(s) 1213
AvaII GGWCC 1 cut(s) 1004
BaeGI GKGCMC 2 cut(s) 394, 682
BanI GGYRCC 2 cut(s) 50, 1288
BanII GRGCYC 3 cut(s) 11, 607, 918
Bbv12I GWGCWC 3 cut(s) 394, 682, 918
BbvI GCAGC 8 cut(s) 57, 151, 289, 532, 909, 1027, 1204, 1311
BccI CCATC 2 cut(s) 328, 1106
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 6 cut(s) 411, 601, 636, 872, 1143, 1383
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 135, 932
BfaI CTAG 3 cut(s) 306, 339, 1214
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 54
Bme1390I CCNGG 7 cut(s) 156, 411, 601, 636, 872, 1143, 1383
Bme18I GGWCC 1 cut(s) 1004
BmgT120I GGNCC 2 cut(s) 1004, 1028
BmiI GGNNCC 4 cut(s) 52, 1005, 1030, 1290
BmrFI CCNGG 7 cut(s) 156, 411, 601, 636, 872, 1143, 1383
BmsI GCATC 4 cut(s) 51, 832, 1103, 1259
BmtI GCTAGC 1 cut(s) 1217
BplI GAGNNNNNCTC 2 cut(s) 84, 116
Bpu10I CCTNAGC 1 cut(s) 1307
BpuEI CTTGAG 3 cut(s) 101, 680, 956
BpuMI CCSGG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 725
BsaBI GATNNNNATC 2 cut(s) 672, 1086
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 155, 600, 1412
BsaWI WCCGGW 1 cut(s) 363
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 626, 1025
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 388, 395, 762
Bse3DI GCAATG 3 cut(s) 323, 523, 779
Bse8I GATNNNNATC 2 cut(s) 672, 1086
BseBI CCWGG 6 cut(s) 411, 601, 636, 872, 1143, 1383
BseDI CCNNGG 3 cut(s) 155, 600, 1412
BseGI GGATG 3 cut(s) 406, 1084, 1094
BseJI GATNNNNATC 2 cut(s) 672, 1086
BseLI CCNNNNNNNGG 3 cut(s) 16, 626, 1025
BseMI GCAATG 3 cut(s) 323, 523, 779
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 3 cut(s) 388, 395, 762
BseRI GAGGAG 1 cut(s) 743
BseSI GKGCMC 2 cut(s) 394, 682
BseXI GCAGC 8 cut(s) 57, 151, 289, 532, 909, 1027, 1204, 1311
BseYI CCCAGC 1 cut(s) 862
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 319, 481, 1029
BshNI GGYRCC 2 cut(s) 50, 1288
BsiHKAI GWGCWC 3 cut(s) 394, 682, 918
BsiSI CCGG 3 cut(s) 48, 155, 364
BslFI GGGAC 2 cut(s) 212, 676
BslI CCNNNNNNNGG 3 cut(s) 16, 626, 1025
BsmAI GTCTC 2 cut(s) 135, 932
BsmFI GGGAC 2 cut(s) 212, 676
BsmI GAATGC 2 cut(s) 121, 1270
BsnI GGCC 3 cut(s) 319, 481, 1029
Bsp1286I GDGCHC 5 cut(s) 11, 394, 607, 682, 918
Bsp1407I TGTACA 1 cut(s) 1021
Bsp143I GATC 7 cut(s) 24, 334, 352, 366, 673, 1138, 1185
BspACI CCGC 4 cut(s) 198, 1303, 1312, 1315
BspANI GGCC 3 cut(s) 319, 481, 1029
BspCNI CTCAG 1 cut(s) 482
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 4 cut(s) 52, 1005, 1030, 1290
BspOI GCTAGC 1 cut(s) 1217
BspPI GGATC 4 cut(s) 329, 360, 374, 1133
BspT107I GGYRCC 2 cut(s) 50, 1288
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 3 cut(s) 323, 523, 779
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 1021
BsrI ACTGG 3 cut(s) 388, 395, 762
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 155, 600, 1412
BssMI GATC 7 cut(s) 24, 334, 352, 366, 673, 1138, 1185
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 6 cut(s) 411, 601, 636, 872, 1143, 1383
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 2 cut(s) 882, 1281
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 2 cut(s) 221, 1226
BstAUI TGTACA 1 cut(s) 1021
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 7, 1211, 1215, 1419
BstDEI CTNAG 3 cut(s) 469, 1064, 1307
BstF5I GGATG 3 cut(s) 406, 1084, 1094
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 3 cut(s) 53, 70, 1209
BstKTI GATC 7 cut(s) 27, 337, 355, 369, 676, 1141, 1188
BstMAI GTCTC 2 cut(s) 135, 932
BstMBI GATC 7 cut(s) 24, 334, 352, 366, 673, 1138, 1185
BstNI CCWGG 6 cut(s) 411, 601, 636, 872, 1143, 1383
BstNSI RCATGY 2 cut(s) 968, 1213
BstSCI CCNGG 7 cut(s) 154, 409, 599, 634, 870, 1141, 1381
BstSFI CTRYAG 1 cut(s) 432
BstSLI GKGCMC 2 cut(s) 394, 682
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 8 cut(s) 57, 151, 289, 532, 909, 1027, 1204, 1311
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 3 cut(s) 319, 481, 1029
BtsCI GGATG 3 cut(s) 406, 1084, 1094
Cac8I GCNNGC 4 cut(s) 7, 1211, 1215, 1419
CfoI GCGC 3 cut(s) 53, 70, 1209
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 1004, 1028
Csp6I GTAC 2 cut(s) 287, 1022
CviQI GTAC 2 cut(s) 287, 1022
DdeI CTNAG 3 cut(s) 469, 1064, 1307
DinI GGCGCC 1 cut(s) 52
DpnI GATC 7 cut(s) 26, 336, 354, 368, 675, 1140, 1187
DpnII GATC 7 cut(s) 24, 334, 352, 366, 673, 1138, 1185
DraI TTTAAA 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 882, 1281
EarI CTCTTC 2 cut(s) 882, 1281
Ecl136II GAGCTC 1 cut(s) 916
Eco147I AGGCCT 1 cut(s) 481
Eco24I GRGCYC 3 cut(s) 11, 607, 918
Eco47I GGWCC 1 cut(s) 1004
Eco53kI GAGCTC 1 cut(s) 916
Eco57I CTGAAG 3 cut(s) 594, 842, 1322
EcoICRI GAGCTC 1 cut(s) 916
EcoO109I RGGNCCY 1 cut(s) 1004
EcoRII CCWGG 6 cut(s) 409, 599, 634, 870, 1141, 1381
EcoT22I ATGCAT 1 cut(s) 1128
EcoT38I GRGCYC 3 cut(s) 11, 607, 918
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
FaqI GGGAC 2 cut(s) 212, 676
FauNDI CATATG 1 cut(s) 192
FokI GGATG 3 cut(s) 393, 1081, 1091
FriOI GRGCYC 3 cut(s) 11, 607, 918
FspBI CTAG 3 cut(s) 306, 339, 1214
GlaI GCGC 3 cut(s) 52, 69, 1208
GsaI CCCAGC 1 cut(s) 866
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 3 cut(s) 319, 481, 1029
HapII CCGG 3 cut(s) 48, 155, 364
HhaI GCGC 3 cut(s) 53, 70, 1209
Hin1I GRCGYC 1 cut(s) 51
Hin6I GCGC 3 cut(s) 51, 68, 1207
HinP1I GCGC 3 cut(s) 51, 68, 1207
HindIII AAGCTT 2 cut(s) 77, 1334
HinfI GANTC 9 cut(s) 29, 205, 262, 538, 748, 823, 1164, 1273, 1342
HpaII CCGG 3 cut(s) 48, 155, 364
HphI GGTGA 5 cut(s) 37, 641, 1214, 1387, 1411
Hpy166II GTNNAC 4 cut(s) 392, 404, 680, 1425
Hpy188I TCNGA 5 cut(s) 204, 588, 1174, 1255, 1341
Hpy188III TCNNGA 7 cut(s) 471, 491, 697, 752, 827, 1430, 1493
Hpy8I GTNNAC 4 cut(s) 392, 404, 680, 1425
Hpy99I CGWCG 1 cut(s) 923
HpyAV CCTTC 2 cut(s) 768, 1193
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 3 cut(s) 724, 838, 876
HpyF3I CTNAG 3 cut(s) 469, 1064, 1307
HpySE526I ACGT 3 cut(s) 724, 838, 876
Hsp92I GRCGYC 1 cut(s) 51
HspAI GCGC 3 cut(s) 51, 68, 1207
KasI GGCGCC 1 cut(s) 50
Kzo9I GATC 7 cut(s) 24, 334, 352, 366, 673, 1138, 1185
LmnI GCTCC 2 cut(s) 794, 1048
Lsp1109I GCAGC 8 cut(s) 57, 151, 289, 532, 909, 1027, 1204, 1311
LweI GCATC 4 cut(s) 51, 832, 1103, 1259
MaeI CTAG 3 cut(s) 306, 339, 1214
MaeII ACGT 3 cut(s) 724, 838, 876
MaeIII GTNAC 3 cut(s) 341, 1151, 1270
MalI GATC 7 cut(s) 26, 336, 354, 368, 675, 1140, 1187
MbiI CCGCTC 1 cut(s) 198
MboI GATC 7 cut(s) 24, 334, 352, 366, 673, 1138, 1185
MboII GAAGA 6 cut(s) 542, 848, 897, 899, 951, 1268
MfeI CAATTG 1 cut(s) 1058
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 5 cut(s) 11, 394, 607, 682, 918
MluCI AATT 8 cut(s) 181, 238, 800, 973, 997, 1058, 1325, 1496
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 4 cut(s) 23, 832, 1173, 1267
MmeI TCCRAC 2 cut(s) 1070, 1441
Mph1103I ATGCAT 1 cut(s) 1128
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 7 cut(s) 360, 440, 624, 1157, 1284, 1329, 1445
MslI CAYNNNNRTG 5 cut(s) 126, 191, 516, 654, 789
MspA1I CMGCKG 1 cut(s) 862
MspI CCGG 3 cut(s) 48, 155, 364
MspR9I CCNGG 7 cut(s) 156, 411, 601, 636, 872, 1143, 1383
MunI CAATTG 1 cut(s) 1058
Mva1269I GAATGC 2 cut(s) 121, 1270
MvaI CCWGG 6 cut(s) 411, 601, 636, 872, 1143, 1383
MvnI CGCG 1 cut(s) 68
NarI GGCGCC 1 cut(s) 51
NciI CCSGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 192
NdeII GATC 7 cut(s) 24, 334, 352, 366, 673, 1138, 1185
NheI GCTAGC 1 cut(s) 1213
NlaIV GGNNCC 4 cut(s) 52, 1005, 1030, 1290
NmeAIII GCCGAG 1 cut(s) 1393
NmuCI GTSAC 2 cut(s) 1151, 1270
NsiI ATGCAT 1 cut(s) 1128
NspI RCATGY 2 cut(s) 968, 1213
PaeI GCATGC 1 cut(s) 1213
PceI AGGCCT 1 cut(s) 481
PctI GAATGC 2 cut(s) 121, 1270
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 5 cut(s) 205, 262, 538, 748, 1342
PfoI TCCNGGA 3 cut(s) 409, 634, 1141
PleI GAGTC 4 cut(s) 23, 831, 1172, 1267
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 4 cut(s) 23, 831, 1172, 1267
Ppu21I YACGTR 1 cut(s) 725
PpuMI RGGWCCY 1 cut(s) 1004
Psp124BI GAGCTC 1 cut(s) 918
Psp5II RGGWCCY 1 cut(s) 1004
Psp6I CCWGG 6 cut(s) 409, 599, 634, 870, 1141, 1381
PspFI CCCAGC 1 cut(s) 862
PspGI CCWGG 6 cut(s) 409, 599, 634, 870, 1141, 1381
PspN4I GGNNCC 4 cut(s) 52, 1005, 1030, 1290
PspPI GGNCC 2 cut(s) 1004, 1028
PspPPI RGGWCCY 1 cut(s) 1004
PsuI RGATCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 862
RsaI GTAC 2 cut(s) 288, 1023
RsaNI GTAC 2 cut(s) 287, 1022
RseI CAYNNNNRTG 5 cut(s) 126, 191, 516, 654, 789
SacI GAGCTC 1 cut(s) 918
SaqAI TTAA 7 cut(s) 360, 440, 624, 1157, 1284, 1329, 1445
Sau3AI GATC 7 cut(s) 24, 334, 352, 366, 673, 1138, 1185
Sau96I GGNCC 2 cut(s) 1004, 1028
SchI GAGTC 4 cut(s) 23, 832, 1173, 1267
ScrFI CCNGG 7 cut(s) 156, 411, 601, 636, 872, 1143, 1383
SduI GDGCHC 5 cut(s) 11, 394, 607, 682, 918
SfaNI GCATC 4 cut(s) 51, 832, 1103, 1259
SfcI CTRYAG 1 cut(s) 432
SfoI GGCGCC 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 47
SinI GGWCC 1 cut(s) 1004
SmiMI CAYNNNNRTG 5 cut(s) 126, 191, 516, 654, 789
SmlI CTYRAG 3 cut(s) 80, 695, 935
SmoI CTYRAG 3 cut(s) 80, 695, 935
SphI GCATGC 1 cut(s) 1213
Sse9I AATT 8 cut(s) 181, 238, 800, 973, 997, 1058, 1325, 1496
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 4 cut(s) 198, 1303, 1312, 1315
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 3 cut(s) 306, 339, 1214
SstI GAGCTC 1 cut(s) 918
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 7 cut(s) 154, 409, 599, 634, 870, 1141, 1381
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 3 cut(s) 727, 841, 879
TaqI TCGA 3 cut(s) 27, 541, 918
TasI AATT 8 cut(s) 181, 238, 800, 973, 997, 1058, 1325, 1496
TatI WGTACW 1 cut(s) 1021
TauI GCSGC 3 cut(s) 1305, 1314, 1317
TfiI GAWTC 5 cut(s) 205, 262, 538, 748, 1342
Tru1I TTAA 7 cut(s) 360, 440, 624, 1157, 1284, 1329, 1445
Tru9I TTAA 7 cut(s) 360, 440, 624, 1157, 1284, 1329, 1445
TseFI GTSAC 2 cut(s) 1151, 1270
TseI GCWGC 8 cut(s) 70, 164, 302, 545, 897, 1015, 1217, 1299
Tsp45I GTSAC 2 cut(s) 1151, 1270
TspDTI ATGAA 5 cut(s) 120, 675, 869, 1310, 1345
VneI GTGCAC 2 cut(s) 390, 678
VpaK11BI GGWCC 1 cut(s) 1004
XapI RAATTY 3 cut(s) 800, 997, 1325
XceI RCATGY 2 cut(s) 968, 1213
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 3 cut(s) 306, 339, 1214
Zsp2I ATGCAT 1 cut(s) 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.