Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001428

Physical Location & Seq

Genomic Coordinates Reverse (-)

10264813 .. 10268475

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCTGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATATGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGTGGGGAACGAGGTCAAATTTGGTTTACACAGTCAATGATATTGATGAGATCCGAGCGGAATGGGCTGAGCATGTTTTGAAGTTCCCAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX UIM

Protein Analysis

153

Amino Acids

17.01

Weight (kDa)

4.69

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00752
fragaria_vesca	FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300
malus_domestica	MD01G1050500.v1.1
prunus_persica	Prupe.2G156600_v2.0.a1
pyrus_communis	pycom01g07530
rosa_chinensis	RchiOBHm_Chr1g0329331 RchiOBHm_Chr1g0352561 RchiOBHm_Chr3g0481331 RchiOBHm_Chr4g0427171
rosa_laevigata	RLG00000028330
rosa_multiflora	Rmu_sc0000147.1_g000024 Rmu_sc0000911.1_g000033 Rmu_sc0008564.1_g000023 Rmu_sc0008823.1_g000008 Rmu_sc0019045.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302630 Rroxscaffold_7G00169710 Rroxscaffold_7G00203150 Rroxscaffold_7G00213050
rosa_rugosa	Rorug01G0230100 Rorug04G0062700 Rorug04G0062800 Rorug04G0062900
rosa_samantha	Rh1AG202000 Rh1AG243600 Rh1BG214200 Rh1CG186900 Rh1CG226800 Rh1CG227100 Rh1DG240200 Rh2AG182200 Rh2DG188600 Rh3AG242000 Rh3DG289800 Rh4DG117700 Rh4DG164500 Rh6CG130000 Rh6CG255900 Rh7DG285300 Rh7DG364500
rosa_wichuraiana	Rw0G009430 Rw1G017790 Rw1G021300 Rw3G029580 Rw4G002460 Rw4G019570 Rw6G016170 Rw7G038890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	422
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	2 cut(s)	212, 409
AcsI	RAATTY	3 cut(s)	111, 124, 382
AcuI	CTGAAG	3 cut(s)	138, 294, 317
AfaI	GTAC	2 cut(s)	70, 235
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	5 cut(s)	8, 20, 27, 160, 445
AjnI	CCWGG	2 cut(s)	85, 220
AluBI	AGCT	5 cut(s)	11, 23, 38, 199, 272
AluI	AGCT	5 cut(s)	11, 23, 38, 199, 272
AlwI	GGATC	2 cut(s)	212, 409
ApeKI	GCWGC	3 cut(s)	11, 196, 286
ApoI	RAATTY	3 cut(s)	111, 124, 382
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	208, 298
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	87, 222
BisI	GCNGC	3 cut(s)	12, 197, 287
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	3 cut(s)	13, 198, 288
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	87, 222
BmrFI	CCNGG	2 cut(s)	87, 222
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	87, 222
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	208, 298
BsgI	GTGCAG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	136, 217, 414
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	1 cut(s)	422
BspCNI	CTCAG	1 cut(s)	424
BspPI	GGATC	2 cut(s)	212, 409
BsrBI	CCGCTC	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	136, 217, 414
Bst2UI	CCWGG	2 cut(s)	87, 222
Bst4CI	ACNGT	3 cut(s)	68, 359, 397
Bst6I	CTCTTC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	309, 432
BstKTI	GATC	3 cut(s)	139, 220, 417
BstMBI	GATC	3 cut(s)	136, 217, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 428
BstNI	CCWGG	2 cut(s)	87, 222
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	85, 220
BstV1I	GCAGC	2 cut(s)	208, 298
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	217, 414
BstYI	RGATCY	2 cut(s)	217, 414
BtsIMutI	CAGTG	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	69, 234
CviAII	CATG	2 cut(s)	237, 437
CviJI	RGCY	7 cut(s)	11, 23, 38, 97, 199, 272, 431
CviKI_1	RGCY	7 cut(s)	11, 23, 38, 97, 199, 272, 431
CviQI	GTAC	2 cut(s)	69, 234
DdeI	CTNAG	2 cut(s)	309, 432
DpnI	GATC	3 cut(s)	138, 219, 416
DpnII	GATC	3 cut(s)	136, 217, 414
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco57I	CTGAAG	3 cut(s)	138, 294, 317
EcoRII	CCWGG	2 cut(s)	85, 220
FaeI	CATG	2 cut(s)	240, 440
FaiI	YATR	4 cut(s)	187, 231, 238, 438
FatI	CATG	2 cut(s)	236, 436
Fnu4HI	GCNGC	3 cut(s)	12, 197, 287
Fsp4HI	GCNGC	3 cut(s)	12, 197, 287
GluI	GCNGC	3 cut(s)	12, 197, 287
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	240, 440
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	4, 211, 305
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	54, 130, 419
Hpy188III	TCNNGA	2 cut(s)	116, 215
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	3 cut(s)	68, 359, 397
HpyCH4V	TGCA	3 cut(s)	61, 143, 196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 428
HpyF3I	CTNAG	2 cut(s)	309, 432
Hsp92II	CATG	2 cut(s)	240, 440
Kzo9I	GATC	3 cut(s)	136, 217, 414
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	9 cut(s)	72, 99, 114, 129, 193, 207, 234, 323, 332
Lsp1109I	GCAGC	2 cut(s)	208, 298
LweI	GCATC	1 cut(s)	183
MalI	GATC	3 cut(s)	138, 219, 416
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	3 cut(s)	136, 217, 414
MboII	GAAGA	4 cut(s)	131, 172, 314, 323
MflI	RGATCY	2 cut(s)	217, 414
MluCI	AATT	5 cut(s)	111, 124, 290, 382, 457
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	1 cut(s)	369
MseI	TTAA	1 cut(s)	460
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	87, 222
MvaI	CCWGG	2 cut(s)	87, 222
MwoI	GCNNNNNNNGC	2 cut(s)	20, 428
NdeII	GATC	3 cut(s)	136, 217, 414
NlaIII	CATG	2 cut(s)	240, 440
NspI	RCATGY	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	4, 211
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	13, 198, 288
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	85, 220
PspGI	CCWGG	2 cut(s)	85, 220
PsuI	RGATCY	2 cut(s)	217, 414
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	70, 235
RsaNI	GTAC	2 cut(s)	69, 234
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	3 cut(s)	12, 197, 287
Sau3AI	GATC	3 cut(s)	136, 217, 414
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	87, 222
SetI	ASST	7 cut(s)	13, 25, 40, 201, 254, 274, 380
SfaNI	GCATC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	5 cut(s)	111, 124, 290, 382, 457
SsiI	CCGC	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	85, 220
TaaI	ACNGT	3 cut(s)	68, 359, 397
TasI	AATT	5 cut(s)	111, 124, 290, 382, 457
TatI	WGTACW	2 cut(s)	68, 233
TfiI	GAWTC	2 cut(s)	4, 211
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	3 cut(s)	11, 196, 286
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	3 cut(s)	111, 124, 382
XceI	RCATGY	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.