Rorug04G0062700

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001428
Physical Location & Seq
Reverse (-)
9810809 .. 9811362
554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0062700.1

Sequence Viewer

Length: 333 bp
ATGAAGGCAAATAAAAACGACATGTCGTCCTTCACAAGACAAAAGGCGAGCTCTCCAGCCGAAATCCAATACGCTCGGCGCTCTGCGGCTCTAGCTTCAGCGAGACAGAGGAGATCTACGGCGACGACGACGATGAGGCCGACGGCGATGGAGTTCTTCAGCGACATGGACGACCAGGGCTCCACCATGGCCATGGACGTCGACGACATCGACGCCCTCGAGATCTTCGGCGGCGACGGCGTCATCGGAGAGAACAAGCTCGCCGACCTCGACTTCTTCAACTCCTTCCCGGACGACTTCGACGAGTCCGACATGATGAACTCGGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

110

Amino Acids

12.14

Weight (kDa)

4.25

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 201
AciI CCGC 2 cut(s) 86, 231
AcoI YGGCCR 2 cut(s) 189, 324
AcuI CTGAAG 2 cut(s) 81, 142
AcyI GRCGYC 3 cut(s) 198, 213, 240
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 1 cut(s) 280
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 3 cut(s) 51, 95, 259
AluI AGCT 3 cut(s) 51, 95, 259
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 3 cut(s) 137, 189, 324
AspLEI GCGC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 218
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 2 cut(s) 53, 182
Bbv12I GWGCWC 1 cut(s) 53
BccI CCATC 1 cut(s) 142
BceAI ACGGC 3 cut(s) 135, 159, 253
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 92, 331
BfoI RGCGCY 1 cut(s) 82
BglII AGATCT 2 cut(s) 113, 222
BisI GCNGC 2 cut(s) 87, 232
BlsI GCNGC 2 cut(s) 88, 233
Bme1390I CCNGG 2 cut(s) 176, 290
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 176, 290
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 3 cut(s) 198, 213, 240
BsaJI CCNNGG 3 cut(s) 175, 186, 192
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 3 cut(s) 175, 186, 192
BseRI GAGGAG 1 cut(s) 124
BshFI GGCC 3 cut(s) 139, 191, 326
BsiHKAI GWGCWC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 3 cut(s) 139, 191, 326
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 53, 182
Bsp143I GATC 2 cut(s) 113, 222
Bsp19I CCATGG 2 cut(s) 186, 192
BspACI CCGC 2 cut(s) 86, 231
BspANI GGCC 3 cut(s) 139, 191, 326
BspLI GGNNCC 1 cut(s) 181
BssECI CCNNGG 3 cut(s) 175, 186, 192
BssMI GATC 2 cut(s) 113, 222
BssNI GRCGYC 3 cut(s) 198, 213, 240
BssT1I CCWWGG 2 cut(s) 186, 192
Bst2UI CCWGG 1 cut(s) 176
BstACI GRCGYC 3 cut(s) 198, 213, 240
BstC8I GCNNGC 2 cut(s) 49, 261
BstDSI CCRYGG 2 cut(s) 186, 192
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 2 cut(s) 116, 225
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 2 cut(s) 113, 222
BstMWI GCNNNNNNNGC 2 cut(s) 92, 237
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 174, 288
BstX2I RGATCY 2 cut(s) 113, 222
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 2 cut(s) 113, 222
BsuRI GGCC 3 cut(s) 139, 191, 326
BtgI CCRYGG 2 cut(s) 186, 192
BtgZI GCGATG 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 49, 261
CfoI GCGC 1 cut(s) 81
CseI GACGC 2 cut(s) 221, 229
CviAII CATG 5 cut(s) 22, 166, 187, 193, 313
CviJI RGCY 9 cut(s) 51, 59, 89, 95, 139, 180, 191, 259, 326
CviKI_1 RGCY 9 cut(s) 51, 59, 89, 95, 139, 180, 191, 259, 326
DpnI GATC 2 cut(s) 115, 224
DpnII GATC 2 cut(s) 113, 222
DriI GACNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 2 cut(s) 189, 324
Eam1105I GACNNNNNGTC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 186, 192
Eco24I GRGCYC 2 cut(s) 53, 182
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 81, 142
Eco88I CYCGRG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 2 cut(s) 186, 192
EcoT38I GRGCYC 2 cut(s) 53, 182
ErhI CCWWGG 2 cut(s) 186, 192
FaeI CATG 5 cut(s) 25, 169, 190, 196, 316
FaiI YATR 5 cut(s) 23, 167, 188, 194, 314
FatI CATG 5 cut(s) 21, 165, 186, 192, 312
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 87, 232
FriOI GRGCYC 2 cut(s) 53, 182
Fsp4HI GCNGC 2 cut(s) 87, 232
FspBI CTAG 2 cut(s) 92, 331
GlaI GCGC 1 cut(s) 80
GluI GCNGC 2 cut(s) 87, 232
GsuI CTGGAG 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 3 cut(s) 139, 191, 326
HapII CCGG 1 cut(s) 290
HgaI GACGC 2 cut(s) 221, 229
HhaI GCGC 1 cut(s) 81
Hin1I GRCGYC 3 cut(s) 198, 213, 240
Hin1II CATG 5 cut(s) 25, 169, 190, 196, 316
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 248, 310
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 9 cut(s) 127, 130, 133, 145, 203, 206, 215, 239, 305
HpyAV CCTTC 2 cut(s) 40, 295
HpyCH4IV ACGT 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 237
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 3 cut(s) 198, 213, 240
Hsp92II CATG 5 cut(s) 25, 169, 190, 196, 316
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 113, 222
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 4 cut(s) 69, 161, 188, 303
MaeI CTAG 2 cut(s) 92, 331
MaeII ACGT 1 cut(s) 198
MalI GATC 2 cut(s) 115, 224
MboI GATC 2 cut(s) 113, 222
MboII GAAGA 3 cut(s) 148, 217, 268
MflI RGATCY 2 cut(s) 113, 222
MhlI GDGCHC 2 cut(s) 53, 182
MlsI TGGCCA 1 cut(s) 191
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 102, 129, 227, 278
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 176, 290
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 92, 237
NciI CCSGG 1 cut(s) 290
NcoI CCATGG 2 cut(s) 186, 192
NdeII GATC 2 cut(s) 113, 222
NlaIII CATG 5 cut(s) 25, 169, 190, 196, 316
NlaIV GGNNCC 1 cut(s) 181
NmeAIII GCCGAG 2 cut(s) 55, 302
NspI RCATGY 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 218
PciI ACATGT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 7 cut(s) 125, 137, 207, 216, 267, 300, 306
PflFI GACNNNGTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 2 cut(s) 88, 233
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PscI ACATGT 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 181
PsuI RGATCY 2 cut(s) 113, 222
PsyI GACNNNGTC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 53
SalI GTCGAC 1 cut(s) 200
SatI GCNGC 2 cut(s) 87, 232
Sau3AI GATC 2 cut(s) 113, 222
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 2 cut(s) 176, 290
SduI GDGCHC 2 cut(s) 53, 182
SetI ASST 5 cut(s) 53, 97, 201, 261, 270
Sfr274I CTCGAG 1 cut(s) 218
SgrDI CGTCGACG 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SsiI CCGC 2 cut(s) 86, 231
SspMI CTAG 2 cut(s) 92, 331
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 174, 288
StyI CCWWGG 2 cut(s) 186, 192
TaiI ACGT 1 cut(s) 201
TaqI TCGA 5 cut(s) 201, 210, 219, 270, 300
TauI GCSGC 2 cut(s) 89, 234
TspDTI ATGAA 2 cut(s) 17, 332
Tth111I GACNNNGTC 1 cut(s) 239
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 2 cut(s) 92, 331
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.