UBA-like domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 12 - 57 | 2.1e-09 | Rx N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 23 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AcsI | RAATTY | 3 cut(s) | 125, 299, 518 |
| AfaI | GTAC | 3 cut(s) | 117, 192, 542 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 498 |
| AgsI | TTSAA | 5 cut(s) | 137, 181, 235, 314, 448 |
| AluBI | AGCT | 3 cut(s) | 142, 177, 329 |
| AluI | AGCT | 3 cut(s) | 142, 177, 329 |
| AoxI | GGCC | 1 cut(s) | 9 |
| ApeKI | GCWGC | 1 cut(s) | 169 |
| ApoI | RAATTY | 3 cut(s) | 125, 299, 518 |
| BaeGI | GKGCMC | 1 cut(s) | 348 |
| BalI | TGGCCA | 1 cut(s) | 11 |
| BbsI | GAAGAC | 2 cut(s) | 299, 380 |
| BbvI | GCAGC | 1 cut(s) | 181 |
| BccI | CCATC | 2 cut(s) | 447, 500 |
| BfaI | CTAG | 1 cut(s) | 366 |
| BisI | GCNGC | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 171 |
| BpiI | GAAGAC | 2 cut(s) | 299, 380 |
| BsaJI | CCNNGG | 1 cut(s) | 108 |
| BsaWI | WCCGGW | 1 cut(s) | 217 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 498 |
| Bse1I | ACTGG | 2 cut(s) | 12, 276 |
| BseDI | CCNNGG | 1 cut(s) | 108 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 498 |
| BseMII | CTCAG | 1 cut(s) | 157 |
| BseNI | ACTGG | 2 cut(s) | 12, 276 |
| BseSI | GKGCMC | 1 cut(s) | 348 |
| BseXI | GCAGC | 1 cut(s) | 181 |
| Bsh1285I | CGRYCG | 1 cut(s) | 222 |
| BshFI | GGCC | 1 cut(s) | 11 |
| BsiEI | CGRYCG | 1 cut(s) | 222 |
| BsiSI | CCGG | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 498 |
| BsnI | GGCC | 1 cut(s) | 11 |
| Bsp1286I | GDGCHC | 1 cut(s) | 348 |
| Bsp1407I | TGTACA | 1 cut(s) | 540 |
| Bsp143I | GATC | 1 cut(s) | 258 |
| BspACI | CCGC | 1 cut(s) | 23 |
| BspANI | GGCC | 1 cut(s) | 11 |
| BspCNI | CTCAG | 1 cut(s) | 156 |
| BsrGI | TGTACA | 1 cut(s) | 540 |
| BsrI | ACTGG | 2 cut(s) | 12, 276 |
| BssECI | CCNNGG | 1 cut(s) | 108 |
| BssMI | GATC | 1 cut(s) | 258 |
| Bst6I | CTCTTC | 1 cut(s) | 403 |
| BstAUI | TGTACA | 1 cut(s) | 540 |
| BstDEI | CTNAG | 1 cut(s) | 143 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstKTI | GATC | 1 cut(s) | 261 |
| BstMBI | GATC | 1 cut(s) | 258 |
| BstMCI | CGRYCG | 1 cut(s) | 222 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 326 |
| BstSLI | GKGCMC | 1 cut(s) | 348 |
| BstV1I | GCAGC | 1 cut(s) | 181 |
| BstV2I | GAAGAC | 2 cut(s) | 299, 380 |
| BsuRI | GGCC | 1 cut(s) | 11 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| BtsIMutI | CAGTG | 1 cut(s) | 19 |
| Csp6I | GTAC | 3 cut(s) | 116, 191, 541 |
| CviAII | CATG | 1 cut(s) | 359 |
| CviJI | RGCY | 4 cut(s) | 11, 142, 177, 329 |
| CviKI_1 | RGCY | 4 cut(s) | 11, 142, 177, 329 |
| CviQI | GTAC | 3 cut(s) | 116, 191, 541 |
| DdeI | CTNAG | 1 cut(s) | 143 |
| DpnI | GATC | 1 cut(s) | 260 |
| DpnII | GATC | 1 cut(s) | 258 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| Eam1104I | CTCTTC | 1 cut(s) | 403 |
| EarI | CTCTTC | 1 cut(s) | 403 |
| FaeI | CATG | 1 cut(s) | 362 |
| FaiI | YATR | 3 cut(s) | 360, 399, 524 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 365, 397 |
| FatI | CATG | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 1 cut(s) | 170 |
| FokI | GGATG | 1 cut(s) | 125 |
| Fsp4HI | GCNGC | 1 cut(s) | 170 |
| FspBI | CTAG | 1 cut(s) | 366 |
| GluI | GCNGC | 1 cut(s) | 170 |
| HaeIII | GGCC | 1 cut(s) | 11 |
| HapII | CCGG | 1 cut(s) | 218 |
| Hin1II | CATG | 1 cut(s) | 362 |
| HinfI | GANTC | 3 cut(s) | 55, 147, 214 |
| HpaII | CCGG | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 2 cut(s) | 193, 541 |
| Hpy188I | TCNGA | 2 cut(s) | 146, 263 |
| Hpy188III | TCNNGA | 2 cut(s) | 445, 513 |
| Hpy8I | GTNNAC | 2 cut(s) | 193, 541 |
| HpyAV | CCTTC | 1 cut(s) | 363 |
| HpyCH4V | TGCA | 3 cut(s) | 52, 99, 358 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 326 |
| HpyF3I | CTNAG | 1 cut(s) | 143 |
| Hsp92II | CATG | 1 cut(s) | 362 |
| Kzo9I | GATC | 1 cut(s) | 258 |
| LpnPI | CCDG | 3 cut(s) | 25, 231, 257 |
| Lsp1109I | GCAGC | 1 cut(s) | 181 |
| MaeI | CTAG | 1 cut(s) | 366 |
| MaeIII | GTNAC | 1 cut(s) | 242 |
| MalI | GATC | 1 cut(s) | 260 |
| MboI | GATC | 1 cut(s) | 258 |
| MboII | GAAGA | 6 cut(s) | 52, 193, 304, 385, 420, 572 |
| MhlI | GDGCHC | 1 cut(s) | 348 |
| MlsI | TGGCCA | 1 cut(s) | 11 |
| MluCI | AATT | 8 cut(s) | 5, 125, 197, 299, 315, 323, 457, 518 |
| MluNI | TGGCCA | 1 cut(s) | 11 |
| MlyI | GAGTC | 1 cut(s) | 141 |
| MmeI | TCCRAC | 2 cut(s) | 191, 385 |
| MnlI | CCTC | 4 cut(s) | 71, 95, 103, 409 |
| Mox20I | TGGCCA | 1 cut(s) | 11 |
| MscI | TGGCCA | 1 cut(s) | 11 |
| MseI | TTAA | 3 cut(s) | 159, 228, 435 |
| Msp20I | TGGCCA | 1 cut(s) | 11 |
| MspI | CCGG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 326 |
| NdeII | GATC | 1 cut(s) | 258 |
| NlaIII | CATG | 1 cut(s) | 362 |
| NmeAIII | GCCGAG | 1 cut(s) | 133 |
| NmuCI | GTSAC | 1 cut(s) | 242 |
| PfeI | GAWTC | 2 cut(s) | 55, 214 |
| PkrI | GCNGC | 1 cut(s) | 171 |
| PleI | GAGTC | 1 cut(s) | 141 |
| PpsI | GAGTC | 1 cut(s) | 141 |
| RsaI | GTAC | 3 cut(s) | 117, 192, 542 |
| RsaNI | GTAC | 3 cut(s) | 116, 191, 541 |
| SaqAI | TTAA | 3 cut(s) | 159, 228, 435 |
| SatI | GCNGC | 1 cut(s) | 170 |
| Sau3AI | GATC | 1 cut(s) | 258 |
| SchI | GAGTC | 1 cut(s) | 141 |
| SduI | GDGCHC | 1 cut(s) | 348 |
| SetI | ASST | 6 cut(s) | 87, 144, 179, 192, 331, 508 |
| Sse9I | AATT | 8 cut(s) | 5, 125, 197, 299, 315, 323, 457, 518 |
| SsiI | CCGC | 1 cut(s) | 23 |
| SspMI | CTAG | 1 cut(s) | 366 |
| TasI | AATT | 8 cut(s) | 5, 125, 197, 299, 315, 323, 457, 518 |
| TatI | WGTACW | 2 cut(s) | 115, 540 |
| TfiI | GAWTC | 2 cut(s) | 55, 214 |
| Tru1I | TTAA | 3 cut(s) | 159, 228, 435 |
| Tru9I | TTAA | 3 cut(s) | 159, 228, 435 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseFI | GTSAC | 1 cut(s) | 242 |
| TseI | GCWGC | 1 cut(s) | 169 |
| Tsp45I | GTSAC | 1 cut(s) | 242 |
| TspRI | CASTG | 1 cut(s) | 19 |
| XapI | RAATTY | 3 cut(s) | 125, 299, 518 |
| XspI | CTAG | 1 cut(s) | 366 |