Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000911.1

Orthogroup ID

OG0001428

Physical Location & Seq

Genomic Coordinates Reverse (-)

116863 .. 121753

Gene Structure 4891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000911.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgccgaggccaactgaggacatgatccagacctacatcagcctcaccggcgcgtctcactcactcgcgctgctaaagctcgaggaacatggaggtgatctcaatgaagccgtgaatgcgcattttagggaaggagatgtacacagtacaagtccttcgtctactgctccctcacagtacaatttccctcaaatgatttcattgtccttgaagacagcagcacaagagaaagcaatacgtgagatgcagctgaacgacaggaatcaagatccaggagtttatagtacatggaagcaaggaaggtcatcacagcaaaatggagctgaagttgtagagcagcaattagttagtgaagagtctaagcgtgatggtgctagtcatcttcagcagggaaaactggcaactcacagtgatgaggatgatgagtatcttgtatcccacttagctgataaagagaaagaaatgaatgttgtccatgaagctgcaacttgtcagttgaagggagatgtcaacaaaagaatcgagccaatggaatttgagagaaggctagatgcaaaaagtgcttcacttccttgtgaaccagcaccagatgatgagaatgctgtaactcttcttgttcggatgccaaatggcagccgccttagccgtcgctttcgcaaatctgacaagcttcagcttctttttgacttcatagatgttggtagggtggtggagcctggaacttacagagtggttaggtcatatcctcggcatgctttcaccgccaataacagcttattaacattgagtgaacttggcctgaccaacaagcaagaagcattatttttggaactgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX UIM

Protein Analysis

279

Amino Acids

31.26

Weight (kDa)

5.44

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00752
fragaria_vesca	FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300
malus_domestica	MD01G1050500.v1.1
prunus_persica	Prupe.2G156600_v2.0.a1
pyrus_communis	pycom01g07530
rosa_chinensis	RchiOBHm_Chr1g0329331 RchiOBHm_Chr1g0352561 RchiOBHm_Chr3g0481331 RchiOBHm_Chr4g0427171
rosa_laevigata	RLG00000028330
rosa_multiflora	Rmu_sc0000147.1_g000024 Rmu_sc0000911.1_g000033 Rmu_sc0008564.1_g000023 Rmu_sc0008823.1_g000008 Rmu_sc0019045.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302630 Rroxscaffold_7G00169710 Rroxscaffold_7G00203150 Rroxscaffold_7G00213050
rosa_rugosa	Rorug01G0230100 Rorug04G0062700 Rorug04G0062800 Rorug04G0062900
rosa_samantha	Rh1AG202000 Rh1AG243600 Rh1BG214200 Rh1CG186900 Rh1CG226800 Rh1CG227100 Rh1DG240200 Rh2AG182200 Rh2DG188600 Rh3AG242000 Rh3DG289800 Rh4DG117700 Rh4DG164500 Rh6CG130000 Rh6CG255900 Rh7DG285300 Rh7DG364500
rosa_wichuraiana	Rw0G009430 Rw1G017790 Rw1G021300 Rw3G029580 Rw4G002460 Rw4G019570 Rw6G016170 Rw7G038890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	161
AccII	CGCG	2 cut(s)	53, 68
AciI	CCGC	2 cut(s)	637, 762
AclWI	GGATC	2 cut(s)	19, 263
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	3 cut(s)	345, 368, 656
AfaI	GTAC	4 cut(s)	141, 148, 179, 286
AgsI	TTSAA	2 cut(s)	211, 499
AjnI	CCWGG	2 cut(s)	271, 715
AluBI	AGCT	8 cut(s)	79, 250, 323, 446, 482, 670, 676, 774
AluI	AGCT	8 cut(s)	79, 250, 323, 446, 482, 670, 676, 774
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	19, 263
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	8, 796
ApeKI	GCWGC	6 cut(s)	70, 218, 247, 337, 482, 633
ApoI	RAATTY	1 cut(s)	533
AspLEI	GCGC	3 cut(s)	53, 70, 121
AsuHPI	GGTGA	3 cut(s)	37, 107, 751
AvaI	CYCGRG	1 cut(s)	80
BarI	GAAGNNNNNNTAC	4 cut(s)	123, 139, 155, 171
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	6 cut(s)	57, 230, 259, 349, 469, 645
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	2 cut(s)	95, 630
BciT130I	CCWGG	2 cut(s)	273, 717
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	375, 548
BfuI	GTATCC	1 cut(s)	445
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	7 cut(s)	71, 219, 248, 338, 483, 634, 637
BlsI	GCNGC	7 cut(s)	72, 220, 249, 339, 484, 635, 638
Bme1390I	CCNGG	2 cut(s)	273, 717
BmeT110I	CYCGRG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	2 cut(s)	273, 717
BmsI	GCATC	3 cut(s)	234, 541, 612
BpiI	GAAGAC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
Bpu10I	CCTNAGC	1 cut(s)	641
BsaAI	YACGTR	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	5, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	273, 717
BseDI	CCNNGG	2 cut(s)	5, 746
BseGI	GGATG	2 cut(s)	424, 627
BseJI	GATNNNNATC	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	402
BseXI	GCAGC	6 cut(s)	57, 230, 259, 349, 469, 645
Bsh1236I	CGCG	2 cut(s)	53, 68
BshFI	GGCC	2 cut(s)	10, 798
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
BsmI	GAATGC	2 cut(s)	121, 604
BsnI	GGCC	2 cut(s)	10, 798
BsoBI	CYCGRG	1 cut(s)	80
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	24, 97, 268
BspACI	CCGC	2 cut(s)	637, 762
BspANI	GGCC	2 cut(s)	10, 798
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	2 cut(s)	53, 68
BspLI	GGNNCC	1 cut(s)	714
BspPI	GGATC	2 cut(s)	19, 263
BsrFI	RCCGGY	1 cut(s)	47
BsrGI	TGTACA	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	5, 746
BssMI	GATC	3 cut(s)	24, 97, 268
Bst2UI	CCWGG	2 cut(s)	273, 717
Bst4CI	ACNGT	3 cut(s)	146, 177, 410
Bst6I	CTCTTC	2 cut(s)	348, 615
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	4 cut(s)	15, 360, 442, 641
BstF5I	GGATG	2 cut(s)	424, 627
BstFNI	CGCG	2 cut(s)	53, 68
BstHHI	GCGC	3 cut(s)	53, 70, 121
BstKTI	GATC	3 cut(s)	27, 100, 271
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	3 cut(s)	24, 97, 268
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 76, 116, 560, 642, 761
BstNI	CCWGG	2 cut(s)	273, 717
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	271, 715
BstUI	CGCG	2 cut(s)	53, 68
BstV1I	GCAGC	6 cut(s)	57, 230, 259, 349, 469, 645
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	10, 798
BtsCI	GGATG	2 cut(s)	424, 627
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	753
CfoI	GCGC	3 cut(s)	53, 70, 121
Cfr10I	RCCGGY	1 cut(s)	47
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	4 cut(s)	140, 147, 178, 285
CviAII	CATG	5 cut(s)	22, 89, 288, 476, 752
CviQI	GTAC	4 cut(s)	140, 147, 178, 285
DdeI	CTNAG	4 cut(s)	15, 360, 442, 641
DpnI	GATC	3 cut(s)	26, 99, 270
DpnII	GATC	3 cut(s)	24, 97, 268
Eam1104I	CTCTTC	2 cut(s)	348, 615
EarI	CTCTTC	2 cut(s)	348, 615
Eco57I	CTGAAG	3 cut(s)	345, 368, 656
Eco88I	CYCGRG	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	271, 715
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	5 cut(s)	25, 92, 291, 479, 755
FaiI	YATR	8 cut(s)	23, 90, 282, 289, 477, 692, 742, 753
FatI	CATG	5 cut(s)	21, 88, 287, 475, 751
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	7 cut(s)	71, 219, 248, 338, 483, 634, 637
FokI	GGATG	2 cut(s)	431, 634
Fsp4HI	GCNGC	7 cut(s)	71, 219, 248, 338, 483, 634, 637
FspAI	RTGCGCAY	1 cut(s)	120
FspBI	CTAG	2 cut(s)	375, 548
FspI	TGCGCA	1 cut(s)	120
GlaI	GCGC	3 cut(s)	52, 69, 120
GluI	GCNGC	7 cut(s)	71, 219, 248, 338, 483, 634, 637
HaeIII	GGCC	2 cut(s)	10, 798
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	3 cut(s)	53, 70, 121
Hin1II	CATG	5 cut(s)	25, 92, 291, 479, 755
Hin6I	GCGC	3 cut(s)	51, 68, 119
HinP1I	GCGC	3 cut(s)	51, 68, 119
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	3 cut(s)	262, 356, 519
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	3 cut(s)	37, 107, 751
Hpy166II	GTNNAC	5 cut(s)	142, 162, 511, 578, 791
Hpy188I	TCNGA	2 cut(s)	621, 664
Hpy188III	TCNNGA	2 cut(s)	28, 266
Hpy8I	GTNNAC	5 cut(s)	142, 162, 511, 578, 791
Hpy99I	CGWCG	1 cut(s)	651
HpyAV	CCTTC	5 cut(s)	125, 165, 294, 493, 537
HpyCH4III	ACNGT	3 cut(s)	146, 177, 410
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	247, 485, 554
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 76, 116, 560, 642, 761
HpyF3I	CTNAG	4 cut(s)	15, 360, 442, 641
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	5 cut(s)	25, 92, 291, 479, 755
HspAI	GCGC	3 cut(s)	51, 68, 119
Kzo9I	GATC	3 cut(s)	24, 97, 268
LmnI	GCTCC	3 cut(s)	172, 320, 712
Lsp1109I	GCAGC	6 cut(s)	57, 230, 259, 349, 469, 645
LweI	GCATC	3 cut(s)	234, 541, 612
MaeI	CTAG	2 cut(s)	375, 548
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	3 cut(s)	26, 99, 270
MboI	GATC	3 cut(s)	24, 97, 268
MboII	GAAGA	4 cut(s)	223, 365, 374, 602
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	3 cut(s)	181, 341, 533
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	8 cut(s)	10, 53, 76, 86, 181, 198, 409, 756
MseI	TTAA	2 cut(s)	779, 838
MslI	CAYNNNNRTG	2 cut(s)	93, 411
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	273, 717
Mva1269I	GAATGC	2 cut(s)	121, 604
MvaI	CCWGG	2 cut(s)	273, 717
MvnI	CGCG	2 cut(s)	53, 68
MwoI	GCNNNNNNNGC	6 cut(s)	48, 76, 116, 560, 642, 761
NdeII	GATC	3 cut(s)	24, 97, 268
NlaIII	CATG	5 cut(s)	25, 92, 291, 479, 755
NlaIV	GGNNCC	1 cut(s)	714
NmeAIII	GCCGAG	2 cut(s)	30, 727
NsbI	TGCGCA	1 cut(s)	120
NspI	RCATGY	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	80
PctI	GAATGC	2 cut(s)	121, 604
PfeI	GAWTC	2 cut(s)	262, 519
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	7 cut(s)	72, 220, 249, 339, 484, 635, 638
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	271, 715
PspGI	CCWGG	2 cut(s)	271, 715
PspN4I	GGNNCC	1 cut(s)	714
PspXI	VCTCGAGB	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	4 cut(s)	141, 148, 179, 286
RsaNI	GTAC	4 cut(s)	140, 147, 178, 285
RseI	CAYNNNNRTG	2 cut(s)	93, 411
SaqAI	TTAA	2 cut(s)	779, 838
SatI	GCNGC	7 cut(s)	71, 219, 248, 338, 483, 634, 637
Sau3AI	GATC	3 cut(s)	24, 97, 268
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	273, 717
SfaNI	GCATC	3 cut(s)	234, 541, 612
Sfr274I	CTCGAG	1 cut(s)	80
SgrAI	CRCCGGYG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	93, 411
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	3 cut(s)	181, 341, 533
SsiI	CCGC	2 cut(s)	637, 762
SspMI	CTAG	2 cut(s)	375, 548
StyD4I	CCNGG	2 cut(s)	271, 715
TaaI	ACNGT	3 cut(s)	146, 177, 410
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	81, 522
TasI	AATT	3 cut(s)	181, 341, 533
TatI	WGTACW	4 cut(s)	139, 146, 177, 284
TauI	GCSGC	1 cut(s)	639
TfiI	GAWTC	2 cut(s)	262, 519
Tru1I	TTAA	2 cut(s)	779, 838
Tru9I	TTAA	2 cut(s)	779, 838
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	6 cut(s)	70, 218, 247, 337, 482, 633
TspDTI	ATGAA	5 cut(s)	120, 189, 479, 492, 679
TspRI	CASTG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	2 cut(s)	375, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.