Rh4DG117700

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001428
Physical Location & Seq
Reverse (-)
18656929 .. 18665477
8549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG117700.1

Sequence Viewer

Length: 1032 bp
ATGTTGTCCTCAGAGCCTTCAAACTTAGGGGCAGGGCATGTTGCTGGTGTACAGACGATTATGAGTGCTAGGCTTCCTATAATCAAGCTTGTAGACTGTGGAACCGGAATTGAGTGTGATTTATCAATTGAGAACAGGGATGGCATTGTAAAATCCCAGATTGTCTACATAATATCTAGAATTGACGGAAGGTTTCAGAAACTGAGTTTTATGATATCTACAGTACAACTTGCTGGAAGGCGCTATACCACCAACCTTGGGTTCACTAGTGAATCTTCGGCAACTGAACATGGAGGCGATCTCAATGAAGCCGTGAATGCACATTTTAGGGAAGGAGATGTACACAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTATAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGTCAGCAATGAGCAGCCTTATCTCTCAGGACAGATGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCTTTACTGTTTACCCGACAGTCTCAATTTATCTTGCTAAGTTCACGACATGTTGAGTCTAACACTATACACGTTTTAAAACCCCATTTATATCTACTACTTGTTTTCAAAGAAACACTCGATATATATATATATTTTTTTTTTGTGCTATGCTTTGTTAATAGCGTCCATGCATTTTTAGTTTGCCTTTTGATTATGTTTCTCCTTTTGATATCAGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

343

Amino Acids

37.92

Weight (kDa)

5.42

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 13 - 59 1.2e-09 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 93, 165
AccIII TCCGGA 1 cut(s) 529
AclWI GGATC 1 cut(s) 800
AcsI RAATTY 2 cut(s) 699, 712
AcuI CTGAAG 1 cut(s) 726
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 4 cut(s) 51, 225, 342, 658
AfiI CCNNNNNNNGG 3 cut(s) 258, 454, 680
AflIII ACRYGT 2 cut(s) 856, 877
AgsI TTSAA 8 cut(s) 21, 355, 481, 596, 608, 615, 748, 916
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 2 cut(s) 448, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 5 cut(s) 88, 599, 611, 626, 787
AluI AGCT 5 cut(s) 88, 599, 611, 626, 787
Alw26I GTCTC 1 cut(s) 834
AlwI GGATC 1 cut(s) 800
AlwNI CAGNNNCTG 1 cut(s) 202
Aor13HI TCCGGA 1 cut(s) 529
ApeKI GCWGC 3 cut(s) 496, 599, 784
ApoI RAATTY 2 cut(s) 699, 712
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 433
BanI GGYRCC 1 cut(s) 430
BarI GAAGNNNNNNTAC 4 cut(s) 229, 261, 324, 356
BbsI GAAGAC 1 cut(s) 755
BbvI GCAGC 3 cut(s) 508, 586, 796
BccI CCATC 2 cut(s) 134, 442
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 2 cut(s) 450, 675
BcoDI GTCTC 1 cut(s) 834
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 3 cut(s) 69, 177, 267
BfmI CTRYAG 2 cut(s) 219, 471
BfoI RGCGCY 1 cut(s) 244
BglII AGATCT 1 cut(s) 391
BisI GCNGC 3 cut(s) 497, 600, 785
BlsI GCNGC 3 cut(s) 498, 601, 786
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 2 cut(s) 450, 675
BmiI GGNNCC 3 cut(s) 103, 432, 468
BmrFI CCNGG 2 cut(s) 450, 675
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 507, 771
BmuI ACTGGG 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 755
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpuEI CTTGAG 1 cut(s) 544
BsaAI YACGTR 1 cut(s) 776
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 256, 448
BsaWI WCCGGW 3 cut(s) 104, 529, 688
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 454, 680
Bse1I ACTGG 2 cut(s) 427, 466
Bse3DI GCAATG 2 cut(s) 496, 577
Bse8I GATNNNNATC 1 cut(s) 723
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 2 cut(s) 450, 675
BseDI CCNNGG 2 cut(s) 256, 448
BseGI GGATG 2 cut(s) 145, 538
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 3 cut(s) 258, 454, 680
BseMI GCAATG 2 cut(s) 496, 577
BseMII CTCAG 3 cut(s) 24, 194, 522
BseNI ACTGG 2 cut(s) 427, 466
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 3 cut(s) 508, 586, 796
BsgI GTGCAG 1 cut(s) 750
BshNI GGYRCC 1 cut(s) 430
BsiSI CCGG 3 cut(s) 105, 530, 689
BslI CCNNNNNNNGG 3 cut(s) 258, 454, 680
BsmAI GTCTC 1 cut(s) 834
BsmI GAATGC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 433
Bsp13I TCCGGA 1 cut(s) 529
Bsp1407I TGTACA 2 cut(s) 49, 340
Bsp143I GATC 4 cut(s) 298, 391, 724, 805
BspCNI CTCAG 3 cut(s) 23, 195, 521
BspEI TCCGGA 1 cut(s) 529
BspLI GGNNCC 3 cut(s) 103, 432, 468
BspPI GGATC 1 cut(s) 800
BspT107I GGYRCC 1 cut(s) 430
BsrDI GCAATG 2 cut(s) 496, 577
BsrGI TGTACA 2 cut(s) 49, 340
BsrI ACTGG 2 cut(s) 427, 466
BssECI CCNNGG 2 cut(s) 256, 448
BssMI GATC 4 cut(s) 298, 391, 724, 805
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 450, 675
Bst4CI ACNGT 6 cut(s) 98, 223, 377, 656, 816, 828
BstACI GRCGYC 1 cut(s) 555
BstAUI TGTACA 2 cut(s) 49, 340
BstBAI YACGTR 1 cut(s) 776
BstDEI CTNAG 6 cut(s) 10, 25, 203, 508, 845, 1029
BstF5I GGATG 2 cut(s) 145, 538
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 4 cut(s) 301, 394, 727, 808
BstMAI GTCTC 1 cut(s) 834
BstMBI GATC 4 cut(s) 298, 391, 724, 805
BstMWI GCNNNNNNNGC 2 cut(s) 317, 608
BstNI CCWGG 2 cut(s) 450, 675
BstNSI RCATGY 2 cut(s) 41, 860
BstSCI CCNGG 2 cut(s) 448, 673
BstSFI CTRYAG 2 cut(s) 219, 471
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 3 cut(s) 508, 586, 796
BstV2I GAAGAC 1 cut(s) 755
BstX2I RGATCY 2 cut(s) 391, 805
BstYI RGATCY 2 cut(s) 391, 805
BtsCI GGATG 2 cut(s) 145, 538
CaiI CAGNNNCTG 1 cut(s) 202
CfoI GCGC 1 cut(s) 243
CseI GACGC 2 cut(s) 563, 961
Csp6I GTAC 4 cut(s) 50, 224, 341, 657
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 4 cut(s) 38, 290, 857, 977
CviQI GTAC 4 cut(s) 50, 224, 341, 657
DdeI CTNAG 6 cut(s) 10, 25, 203, 508, 845, 1029
DpnI GATC 4 cut(s) 300, 393, 726, 807
DpnII GATC 4 cut(s) 298, 391, 724, 805
DraI TTTAAA 1 cut(s) 885
Eco130I CCWWGG 1 cut(s) 256
Eco32I GATATC 2 cut(s) 216, 1020
Eco57I CTGAAG 1 cut(s) 726
EcoRII CCWGG 2 cut(s) 448, 673
EcoRV GATATC 2 cut(s) 216, 1020
EcoT14I CCWWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 982
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 4 cut(s) 41, 293, 860, 980
FatI CATG 4 cut(s) 37, 289, 856, 976
FblI GTMKAC 2 cut(s) 93, 165
Fnu4HI GCNGC 3 cut(s) 497, 600, 785
FokI GGATG 2 cut(s) 152, 545
Fsp4HI GCNGC 3 cut(s) 497, 600, 785
FspBI CTAG 3 cut(s) 69, 177, 267
GlaI GCGC 1 cut(s) 242
GluI GCNGC 3 cut(s) 497, 600, 785
HaeII RGCGCY 1 cut(s) 244
HapII CCGG 3 cut(s) 105, 530, 689
HgaI GACGC 2 cut(s) 563, 961
HhaI GCGC 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 4 cut(s) 41, 293, 860, 980
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 86, 609
HinfI GANTC 4 cut(s) 272, 592, 799, 863
HpaII CCGG 3 cut(s) 105, 530, 689
HphI GGTGA 1 cut(s) 429
Hpy166II GTNNAC 7 cut(s) 50, 94, 166, 264, 343, 819, 851
Hpy188I TCNGA 5 cut(s) 13, 198, 405, 642, 718
Hpy188III TCNNGA 7 cut(s) 177, 510, 530, 561, 704, 803, 852
Hpy8I GTNNAC 7 cut(s) 50, 94, 166, 264, 343, 819, 851
HpyAV CCTTC 6 cut(s) 27, 183, 231, 326, 369, 450
HpyCH4III ACNGT 6 cut(s) 98, 223, 377, 656, 816, 828
HpyCH4IV ACGT 2 cut(s) 775, 879
HpyCH4V TGCA 6 cut(s) 320, 416, 649, 731, 784, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 608
HpyF3I CTNAG 6 cut(s) 10, 25, 203, 508, 845, 1029
HpySE526I ACGT 2 cut(s) 775, 879
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 4 cut(s) 41, 293, 860, 980
HspAI GCGC 1 cut(s) 241
Kpn2I TCCGGA 1 cut(s) 529
Kzo9I GATC 4 cut(s) 298, 391, 724, 805
Lsp1109I GCAGC 3 cut(s) 508, 586, 796
LweI GCATC 2 cut(s) 507, 771
MaeI CTAG 3 cut(s) 69, 177, 267
MaeII ACGT 2 cut(s) 775, 879
MaeIII GTNAC 1 cut(s) 457
MalI GATC 4 cut(s) 300, 393, 726, 807
MboI GATC 4 cut(s) 298, 391, 724, 805
MboII GAAGA 4 cut(s) 267, 596, 719, 760
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 391, 805
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 7 cut(s) 108, 126, 180, 525, 699, 712, 833
MlyI GAGTC 1 cut(s) 872
MnlI CCTC 5 cut(s) 19, 287, 448, 568, 574
Mph1103I ATGCAT 1 cut(s) 982
MroI TCCGGA 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 3 cut(s) 419, 884, 966
MspA1I CMGCKG 1 cut(s) 787
MspI CCGG 3 cut(s) 105, 530, 689
MspR9I CCNGG 2 cut(s) 450, 675
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 450, 675
MwoI GCNNNNNNNGC 2 cut(s) 317, 608
NdeII GATC 4 cut(s) 298, 391, 724, 805
NlaIII CATG 4 cut(s) 41, 293, 860, 980
NlaIV GGNNCC 3 cut(s) 103, 432, 468
NsiI ATGCAT 1 cut(s) 982
NspI RCATGY 2 cut(s) 41, 860
PciI ACATGT 1 cut(s) 856
PctI GAATGC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 272, 592, 799
PkrI GCNGC 3 cut(s) 498, 601, 786
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
Ppu21I YACGTR 1 cut(s) 776
PscI ACATGT 1 cut(s) 856
Psp6I CCWGG 2 cut(s) 448, 673
PspGI CCWGG 2 cut(s) 448, 673
PspN4I GGNNCC 3 cut(s) 103, 432, 468
PsrI GAACNNNNNNTAC 2 cut(s) 450, 482
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 2 cut(s) 391, 805
PvuII CAGCTG 1 cut(s) 787
RsaI GTAC 4 cut(s) 51, 225, 342, 658
RsaNI GTAC 4 cut(s) 50, 224, 341, 657
SaqAI TTAA 3 cut(s) 419, 884, 966
SatI GCNGC 3 cut(s) 497, 600, 785
Sau3AI GATC 4 cut(s) 298, 391, 724, 805
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 2 cut(s) 450, 675
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 2 cut(s) 507, 771
SfcI CTRYAG 2 cut(s) 219, 471
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 7 cut(s) 108, 126, 180, 525, 699, 712, 833
SspMI CTAG 3 cut(s) 69, 177, 267
StyD4I CCNGG 2 cut(s) 448, 673
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 6 cut(s) 98, 223, 377, 656, 816, 828
TaiI ACGT 2 cut(s) 778, 882
TaqI TCGA 1 cut(s) 927
TasI AATT 7 cut(s) 108, 126, 180, 525, 699, 712, 833
TatI WGTACW 4 cut(s) 49, 223, 340, 656
TfiI GAWTC 3 cut(s) 272, 592, 799
Tru1I TTAA 3 cut(s) 419, 884, 966
Tru9I TTAA 3 cut(s) 419, 884, 966
TseI GCWGC 3 cut(s) 496, 599, 784
TspDTI ATGAA 2 cut(s) 321, 351
TspGWI ACGGA 1 cut(s) 201
XapI RAATTY 2 cut(s) 699, 712
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 2 cut(s) 41, 860
XmiI GTMKAC 2 cut(s) 93, 165
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 3 cut(s) 69, 177, 267
ZrmI AGTACT 1 cut(s) 658
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.