Rw4G002460

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001428
Physical Location & Seq
Reverse (-)
4865178 .. 4868514
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002460.1

Sequence Viewer

Length: 1050 bp
ATGAGATCACAATTTGGATGGTCCTCACATGTTGTCCTCAGAGAACATGGAGGCGATCTCAATGAAGCCGTGAATGCACATTTTAGGGTAGGAGATGTACACAGTACAAGTCCTTCATCTACTGCTCCCCCACAGTACAATTTCCCTCAAATGAGTAATCAGAATCAAGTAGCTCCACAACAAGGACTTATGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTATAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGATGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCTTTACTGTTTACCCGACAGTCTCAATTTATCTTGCTAAGTTCACGACATGATCTTGGTGCAGATAACGGTTTGGATGACTGTCTTGAGGAAGGTCACTGTGTTAGTATTCGAGGTAAATTTGGACCCGTCAGAAAACCGCGAGCCAGTACAAGGGAGGGTTGTAAGGCAATGATTCATGTCAAGTATGATAAATCTGGTAAATGGGTGATTACAAAATTTGTTAAGGAACATAACCATTCACTTGTGGTGTCTCCACGTGAAGCACGTCAAACAATGGTCAGTAGTTTTCTTATATTTAGTAATATTTGCCAGTTCCTATATATAATTGGACTTTCAATTCTGGGGATTATTAGTGTCTCACATGTTTCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

349

Amino Acids

38.45

Weight (kDa)

6.42

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 267 - 307 6.8e-14 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AccII CGCG 1 cut(s) 814
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 1 cut(s) 812
AclWI GGATC 1 cut(s) 665
AcsI RAATTY 4 cut(s) 564, 577, 791, 890
AcuI CTGAAG 1 cut(s) 591
AcvI CACGTG 1 cut(s) 932
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 5 cut(s) 99, 106, 137, 523, 823
AfiI CCNNNNNNNGG 4 cut(s) 182, 319, 545, 825
AflIII ACRYGT 2 cut(s) 28, 1036
AgsI TTSAA 7 cut(s) 220, 346, 461, 473, 480, 613, 1011
AjiI CACGTC 1 cut(s) 941
AjnI CCWGG 3 cut(s) 209, 313, 538
AluBI AGCT 5 cut(s) 173, 464, 476, 491, 652
AluI AGCT 5 cut(s) 173, 464, 476, 491, 652
Alw26I GTCTC 3 cut(s) 699, 930, 1036
AlwI GGATC 1 cut(s) 665
Aor13HI TCCGGA 1 cut(s) 394
ApeKI GCWGC 3 cut(s) 361, 464, 649
ApoI RAATTY 4 cut(s) 564, 577, 791, 890
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 2 cut(s) 21, 797
AsuHPI GGTGA 2 cut(s) 294, 892
AvaII GGWCC 2 cut(s) 21, 797
BaeGI GKGCMC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 295
BarI GAAGNNNNNNTAC 2 cut(s) 97, 129
BbrPI CACGTG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 620
BbvI GCAGC 3 cut(s) 373, 451, 661
BccI CCATC 2 cut(s) 12, 307
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 3 cut(s) 211, 315, 540
BcoDI GTCTC 3 cut(s) 699, 930, 1036
BfmI CTRYAG 1 cut(s) 336
BglII AGATCT 1 cut(s) 256
BisI GCNGC 3 cut(s) 362, 465, 650
BlsI GCNGC 3 cut(s) 363, 466, 651
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 3 cut(s) 211, 315, 540
Bme18I GGWCC 2 cut(s) 21, 797
BmgBI CACGTC 1 cut(s) 941
BmgT120I GGNCC 2 cut(s) 21, 797
BmiI GGNNCC 3 cut(s) 297, 333, 799
BmrFI CCNGG 3 cut(s) 211, 315, 540
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 372, 636
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 620
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BpuEI CTTGAG 2 cut(s) 409, 779
BsaAI YACGTR 2 cut(s) 641, 932
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 2 cut(s) 394, 553
Bsc4I CCNNNNNNNGG 4 cut(s) 182, 319, 545, 825
Bse1I ACTGG 4 cut(s) 292, 331, 819, 985
Bse3DI GCAATG 3 cut(s) 361, 442, 849
Bse8I GATNNNNATC 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 3 cut(s) 211, 315, 540
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 3 cut(s) 23, 403, 754
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 182, 319, 545, 825
BseMI GCAATG 3 cut(s) 361, 442, 849
BseMII CTCAG 2 cut(s) 52, 387
BseNI ACTGG 4 cut(s) 292, 331, 819, 985
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 3 cut(s) 373, 451, 661
BsgI GTGCAG 2 cut(s) 615, 753
Bsh1236I CGCG 1 cut(s) 814
BshNI GGYRCC 1 cut(s) 295
BsiSI CCGG 2 cut(s) 395, 554
BslI CCNNNNNNNGG 4 cut(s) 182, 319, 545, 825
BsmAI GTCTC 3 cut(s) 699, 930, 1036
BsmI GAATGC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 298
Bsp13I TCCGGA 1 cut(s) 394
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 6 cut(s) 5, 55, 256, 589, 670, 724
BspACI CCGC 1 cut(s) 812
BspCNI CTCAG 2 cut(s) 51, 386
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 814
BspLI GGNNCC 3 cut(s) 297, 333, 799
BspPI GGATC 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 295
BsrDI GCAATG 3 cut(s) 361, 442, 849
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 4 cut(s) 292, 331, 819, 985
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 6 cut(s) 5, 55, 256, 589, 670, 724
BssNI GRCGYC 1 cut(s) 420
Bst2UI CCWGG 3 cut(s) 211, 315, 540
Bst4CI ACNGT 9 cut(s) 104, 135, 242, 521, 681, 693, 743, 755, 773
BstACI GRCGYC 1 cut(s) 420
BstAUI TGTACA 1 cut(s) 97
BstBAI YACGTR 2 cut(s) 641, 932
BstC8I GCNNGC 2 cut(s) 352, 816
BstDEI CTNAG 3 cut(s) 38, 373, 710
BstF5I GGATG 3 cut(s) 23, 403, 754
BstFNI CGCG 1 cut(s) 814
BstKTI GATC 6 cut(s) 8, 58, 259, 592, 673, 727
BstMAI GTCTC 3 cut(s) 699, 930, 1036
BstMBI GATC 6 cut(s) 5, 55, 256, 589, 670, 724
BstMWI GCNNNNNNNGC 2 cut(s) 74, 473
BstNI CCWGG 3 cut(s) 211, 315, 540
BstNSI RCATGY 2 cut(s) 32, 1040
BstSCI CCNGG 3 cut(s) 209, 313, 538
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 1 cut(s) 814
BstV1I GCAGC 3 cut(s) 373, 451, 661
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 2 cut(s) 256, 670
BstYI RGATCY 2 cut(s) 256, 670
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 3 cut(s) 23, 403, 754
BtsIMutI CAGTG 1 cut(s) 769
Cac8I GCNNGC 2 cut(s) 352, 816
Cfr13I GGNCC 2 cut(s) 21, 797
CseI GACGC 1 cut(s) 428
Csp6I GTAC 5 cut(s) 98, 105, 136, 522, 822
CviAII CATG 5 cut(s) 29, 47, 722, 851, 1037
CviQI GTAC 5 cut(s) 98, 105, 136, 522, 822
DdeI CTNAG 3 cut(s) 38, 373, 710
DpnI GATC 6 cut(s) 7, 57, 258, 591, 672, 726
DpnII GATC 6 cut(s) 5, 55, 256, 589, 670, 724
Eco47I GGWCC 2 cut(s) 21, 797
Eco57I CTGAAG 1 cut(s) 591
Eco72I CACGTG 1 cut(s) 932
EcoRII CCWGG 3 cut(s) 209, 313, 538
FaeI CATG 5 cut(s) 32, 50, 725, 854, 1040
FatI CATG 5 cut(s) 28, 46, 721, 850, 1036
Fnu4HI GCNGC 3 cut(s) 362, 465, 650
FokI GGATG 3 cut(s) 30, 410, 761
Fsp4HI GCNGC 3 cut(s) 362, 465, 650
GluI GCNGC 3 cut(s) 362, 465, 650
HapII CCGG 2 cut(s) 395, 554
HgaI GACGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 5 cut(s) 32, 50, 725, 854, 1040
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 4 cut(s) 163, 457, 664, 847
HpaII CCGG 2 cut(s) 395, 554
HphI GGTGA 2 cut(s) 294, 892
Hpy166II GTNNAC 3 cut(s) 100, 684, 716
Hpy188I TCNGA 6 cut(s) 41, 162, 270, 507, 583, 806
Hpy188III TCNNGA 7 cut(s) 375, 395, 426, 569, 668, 717, 758
Hpy8I GTNNAC 3 cut(s) 100, 684, 716
HpyAV CCTTC 4 cut(s) 123, 234, 315, 758
HpyCH4III ACNGT 9 cut(s) 104, 135, 242, 521, 681, 693, 743, 755, 773
HpyCH4IV ACGT 3 cut(s) 640, 931, 940
HpyCH4V TGCA 6 cut(s) 77, 281, 514, 596, 649, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 473
HpyF3I CTNAG 3 cut(s) 38, 373, 710
HpySE526I ACGT 3 cut(s) 640, 931, 940
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 5 cut(s) 32, 50, 725, 854, 1040
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 6 cut(s) 5, 55, 256, 589, 670, 724
LmnI GCTCC 2 cut(s) 130, 178
Lsp1109I GCAGC 3 cut(s) 373, 451, 661
LweI GCATC 2 cut(s) 372, 636
MaeII ACGT 3 cut(s) 640, 931, 940
MaeIII GTNAC 2 cut(s) 322, 767
MalI GATC 6 cut(s) 7, 57, 258, 591, 672, 726
MboI GATC 6 cut(s) 5, 55, 256, 589, 670, 724
MboII GAAGA 3 cut(s) 461, 584, 625
MflI RGATCY 2 cut(s) 256, 670
MhlI GDGCHC 1 cut(s) 298
MroI TCCGGA 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 2 cut(s) 284, 897
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 2 cut(s) 395, 554
MspR9I CCNGG 3 cut(s) 211, 315, 540
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 3 cut(s) 211, 315, 540
MvnI CGCG 1 cut(s) 814
MwoI GCNNNNNNNGC 2 cut(s) 74, 473
NdeII GATC 6 cut(s) 5, 55, 256, 589, 670, 724
NlaIII CATG 5 cut(s) 32, 50, 725, 854, 1040
NlaIV GGNNCC 3 cut(s) 297, 333, 799
NmuCI GTSAC 1 cut(s) 767
NspI RCATGY 2 cut(s) 32, 1040
PciI ACATGT 2 cut(s) 28, 1036
PcsI WCGNNNNNNNCGW 1 cut(s) 937
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 4 cut(s) 163, 457, 664, 847
PkrI GCNGC 3 cut(s) 363, 466, 651
PmaCI CACGTG 1 cut(s) 932
PmlI CACGTG 1 cut(s) 932
Ppu21I YACGTR 2 cut(s) 641, 932
PscI ACATGT 2 cut(s) 28, 1036
Psp6I CCWGG 3 cut(s) 209, 313, 538
PspCI CACGTG 1 cut(s) 932
PspGI CCWGG 3 cut(s) 209, 313, 538
PspN4I GGNNCC 3 cut(s) 297, 333, 799
PspPI GGNCC 2 cut(s) 21, 797
PsrI GAACNNNNNNTAC 2 cut(s) 315, 347
PsuI RGATCY 2 cut(s) 256, 670
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 5 cut(s) 99, 106, 137, 523, 823
RsaNI GTAC 5 cut(s) 98, 105, 136, 522, 822
SaqAI TTAA 2 cut(s) 284, 897
SatI GCNGC 3 cut(s) 362, 465, 650
Sau3AI GATC 6 cut(s) 5, 55, 256, 589, 670, 724
Sau96I GGNCC 2 cut(s) 21, 797
ScaI AGTACT 1 cut(s) 523
ScrFI CCNGG 3 cut(s) 211, 315, 540
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 2 cut(s) 372, 636
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 2 cut(s) 21, 797
SmlI CTYRAG 2 cut(s) 424, 758
SmoI CTYRAG 2 cut(s) 424, 758
SsiI CCGC 1 cut(s) 812
SspI AATATT 1 cut(s) 979
StyD4I CCNGG 3 cut(s) 209, 313, 538
TaaI ACNGT 9 cut(s) 104, 135, 242, 521, 681, 693, 743, 755, 773
TaiI ACGT 3 cut(s) 643, 934, 943
TaqI TCGA 2 cut(s) 784, 1043
TatI WGTACW 5 cut(s) 97, 104, 135, 521, 821
TfiI GAWTC 4 cut(s) 163, 457, 664, 847
Tru1I TTAA 2 cut(s) 284, 897
Tru9I TTAA 2 cut(s) 284, 897
TscAI CASTG 1 cut(s) 776
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 3 cut(s) 361, 464, 649
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 4 cut(s) 78, 105, 216, 839
TspRI CASTG 1 cut(s) 776
VpaK11BI GGWCC 2 cut(s) 21, 797
XapI RAATTY 4 cut(s) 564, 577, 791, 890
XceI RCATGY 2 cut(s) 32, 1040
XmnI GAANNNNTTC 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.