Rh3AG242000

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001428
Physical Location & Seq
Reverse (-)
25416539 .. 25427638
11100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG242000.1

Sequence Viewer

Length: 1149 bp
ATGCCTGTCCTTGGTGTTACTGTTCCACTCAGTGAGGCCCCCACTGCGTTGGAGGGGGGCAATGATGGTAATAGTAATGCACGAAGTGGTGATGTGCACCGTAGTGGTGATGTGAACATAGAAGTAGAGGCTAGTGGTGATCAAAATGGTGGTGTTAATGAAGTAGAGGCTTGTGGTGATCAAAATGCACGAAGTGGTGATGTGGACATGGAAGAAGTAGAGGCTAGTGGTGATCAAAATGGTGGTGTTAATGAAGTAGAAATTGGTGAACAGAATGAGACTAGTAATGTTGTCACTGAAATGGGAAATGTTGACCAGAATGAAGTTGATGGTGACCAAAATGTTAATGAAGGCCTTGTAGTTGTTCCAGTTGATGCTGAAATGGGTTCTCCGAATGTGCGAAACAGTACTCCCAATGAATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACACGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAACAGGGAAAACTGGTAGCTCACAGTGATGTGACTAGTCAAATTTATCACATATATACTTGTAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACCTAATAATCTGCCTATACATGCCTCTTCCTCATCCTCTCTATCAGCAAGGCAATTGCTCAGAGAACAACAGGATGATGAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAGCAAAAGAATCGAGCCAATGGAATTTGAGAGAAGGCTAGATGCAAAAAGTGCTTCACTTCCTTGTGAACCAGCACCAGATGATGAGAATGCTGTGACTCTTCTTGTTCGGATGCCAAATTGTAGCCGCCTTAGCCGTCACTTTCGCAAATCTGACAGGCTTCAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

382

Amino Acids

41.71

Weight (kDa)

4.65

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1105
AclWI GGATC 1 cut(s) 551
AcsI RAATTY 4 cut(s) 450, 463, 714, 1001
AcuI CTGAAG 3 cut(s) 477, 633, 1124
AdeI CACNNNGTG 3 cut(s) 32, 86, 194
AfaI GTAC 2 cut(s) 409, 574
AfiI CCNNNNNNNGG 2 cut(s) 11, 431
AgsI TTSAA 3 cut(s) 499, 674, 967
AhlI ACTAGT 2 cut(s) 281, 707
AjnI CCWGG 2 cut(s) 424, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 7 cut(s) 538, 611, 692, 746, 762, 914, 950
AluI AGCT 7 cut(s) 538, 611, 692, 746, 762, 914, 950
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 272, 778
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 1 cut(s) 551
AoxI GGCC 2 cut(s) 36, 352
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 535, 625, 950
ApoI RAATTY 4 cut(s) 450, 463, 714, 1001
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 8 cut(s) 101, 119, 149, 188, 209, 242, 278, 344
BaeGI GKGCMC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 547, 637, 937
BccI CCATC 3 cut(s) 59, 323, 650
BceAI ACGGC 1 cut(s) 1098
BcgI CGANNNNNNTGC 2 cut(s) 970, 1004
BciT130I CCWGG 2 cut(s) 426, 561
BclI TGATCA 3 cut(s) 139, 178, 232
BcoDI GTCTC 2 cut(s) 272, 778
BcuI ACTAGT 2 cut(s) 281, 707
BfaI CTAG 5 cut(s) 132, 225, 282, 708, 1016
BisI GCNGC 4 cut(s) 536, 626, 951, 1105
BlsI GCNGC 4 cut(s) 537, 627, 952, 1106
BmcAI AGTACT 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 426, 561
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 426, 561
BmsI GCATC 5 cut(s) 364, 522, 911, 1009, 1080
BpiI GAAGAC 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 1109
BpuEI CTTGAG 1 cut(s) 802
BsaAI YACGTR 1 cut(s) 527
BsaBI GATNNNNATC 2 cut(s) 474, 894
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 431
Bse1I ACTGG 2 cut(s) 368, 690
Bse3DI GCAATG 1 cut(s) 67
Bse8I GATNNNNATC 2 cut(s) 474, 894
BseBI CCWGG 2 cut(s) 426, 561
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 4 cut(s) 845, 892, 902, 1095
BseJI GATNNNNATC 2 cut(s) 474, 894
BseLI CCNNNNNNNGG 2 cut(s) 11, 431
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 43, 886
BseNI ACTGG 2 cut(s) 368, 690
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 3 cut(s) 547, 637, 937
BsgI GTGCAG 2 cut(s) 501, 773
BshFI GGCC 2 cut(s) 38, 354
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 11, 431
BsmAI GTCTC 2 cut(s) 272, 778
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 2 cut(s) 38, 354
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 5 cut(s) 139, 178, 232, 475, 556
BspACI CCGC 1 cut(s) 1105
BspANI GGCC 2 cut(s) 38, 354
BspCNI CTCAG 2 cut(s) 42, 885
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 2 cut(s) 368, 690
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 5 cut(s) 139, 178, 232, 475, 556
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 2 cut(s) 426, 561
Bst4CI ACNGT 4 cut(s) 22, 101, 407, 698
Bst6I CTCTTC 3 cut(s) 636, 844, 1083
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstBAI YACGTR 1 cut(s) 527
BstDEI CTNAG 5 cut(s) 29, 648, 872, 910, 1109
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 4 cut(s) 845, 892, 902, 1095
BstKTI GATC 5 cut(s) 142, 181, 235, 478, 559
BstMAI GTCTC 2 cut(s) 272, 778
BstMBI GATC 5 cut(s) 139, 178, 232, 475, 556
BstMWI GCNNNNNNNGC 3 cut(s) 44, 1028, 1110
BstNI CCWGG 2 cut(s) 426, 561
BstNSI RCATGY 1 cut(s) 836
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 424, 559
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 547, 637, 937
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 556
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 2 cut(s) 38, 354
BtsCI GGATG 4 cut(s) 845, 892, 902, 1095
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 4 cut(s) 37, 42, 294, 703
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 408, 573
CviAII CATG 3 cut(s) 208, 833, 944
CviQI GTAC 2 cut(s) 408, 573
DdeI CTNAG 5 cut(s) 29, 648, 872, 910, 1109
DpnI GATC 5 cut(s) 141, 180, 234, 477, 558
DpnII GATC 5 cut(s) 139, 178, 232, 475, 556
DraIII CACNNNGTG 3 cut(s) 32, 86, 194
Eam1104I CTCTTC 3 cut(s) 636, 844, 1083
EarI CTCTTC 3 cut(s) 636, 844, 1083
Eco130I CCWWGG 1 cut(s) 10
Eco147I AGGCCT 1 cut(s) 354
Eco57I CTGAAG 3 cut(s) 477, 633, 1124
Eco91I GGTNACC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 424, 559
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 211, 836, 947
FatI CATG 3 cut(s) 207, 832, 943
FbaI TGATCA 3 cut(s) 139, 178, 232
Fnu4HI GCNGC 4 cut(s) 536, 626, 951, 1105
FokI GGATG 4 cut(s) 832, 889, 899, 1102
Fsp4HI GCNGC 4 cut(s) 536, 626, 951, 1105
FspBI CTAG 5 cut(s) 132, 225, 282, 708, 1016
GluI GCNGC 4 cut(s) 536, 626, 951, 1105
HaeIII GGCC 2 cut(s) 38, 354
HapII CCGG 1 cut(s) 440
Hin1II CATG 3 cut(s) 211, 836, 947
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 5 cut(s) 419, 550, 644, 987, 1075
HpaII CCGG 1 cut(s) 440
HphI GGTGA 8 cut(s) 101, 119, 149, 188, 209, 242, 278, 344
Hpy166II GTNNAC 7 cut(s) 97, 115, 205, 269, 313, 575, 1046
Hpy188I TCNGA 5 cut(s) 393, 469, 875, 1089, 1132
Hpy188III TCNNGA 2 cut(s) 455, 554
Hpy8I GTNNAC 7 cut(s) 97, 115, 205, 269, 313, 575, 1046
HpyAV CCTTC 4 cut(s) 344, 582, 961, 1005
HpyCH4III ACNGT 4 cut(s) 22, 101, 407, 698
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 9 cut(s) 80, 97, 188, 482, 535, 790, 902, 953, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 1028, 1110
HpyF3I CTNAG 5 cut(s) 29, 648, 872, 910, 1109
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 3 cut(s) 211, 836, 947
Ksp22I TGATCA 3 cut(s) 139, 178, 232
Kzo9I GATC 5 cut(s) 139, 178, 232, 475, 556
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 3 cut(s) 547, 637, 937
LweI GCATC 5 cut(s) 364, 522, 911, 1009, 1080
MaeI CTAG 5 cut(s) 132, 225, 282, 708, 1016
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 6 cut(s) 16, 292, 332, 703, 1072, 1115
MalI GATC 5 cut(s) 141, 180, 234, 477, 558
MboI GATC 5 cut(s) 139, 178, 232, 475, 556
MboII GAAGA 7 cut(s) 224, 470, 511, 653, 662, 831, 1070
MfeI CAATTG 1 cut(s) 866
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 9 cut(s) 261, 450, 463, 629, 714, 773, 866, 1001, 1096
MlyI GAGTC 2 cut(s) 653, 1069
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 8 cut(s) 28, 46, 121, 160, 214, 847, 853, 859
MseI TTAA 3 cut(s) 156, 249, 345
MslI CAYNNNNRTG 3 cut(s) 102, 299, 699
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 2 cut(s) 426, 561
MunI CAATTG 1 cut(s) 866
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 2 cut(s) 426, 561
MwoI GCNNNNNNNGC 3 cut(s) 44, 1028, 1110
NdeII GATC 5 cut(s) 139, 178, 232, 475, 556
NlaIII CATG 3 cut(s) 211, 836, 947
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 5 cut(s) 292, 332, 703, 1072, 1115
NspI RCATGY 1 cut(s) 836
OliI CACNNNNGTG 1 cut(s) 102
PceI AGGCCT 1 cut(s) 354
PctI GAATGC 1 cut(s) 1072
PfeI GAWTC 3 cut(s) 419, 550, 987
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 4 cut(s) 537, 627, 952, 1106
PleI GAGTC 2 cut(s) 652, 1069
PpsI GAGTC 2 cut(s) 652, 1069
Ppu21I YACGTR 1 cut(s) 527
Psp6I CCWGG 2 cut(s) 424, 559
PspEI GGTNACC 1 cut(s) 332
PspGI CCWGG 2 cut(s) 424, 559
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 538
RsaI GTAC 2 cut(s) 409, 574
RsaNI GTAC 2 cut(s) 408, 573
RseI CAYNNNNRTG 3 cut(s) 102, 299, 699
SaqAI TTAA 3 cut(s) 156, 249, 345
SatI GCNGC 4 cut(s) 536, 626, 951, 1105
Sau3AI GATC 5 cut(s) 139, 178, 232, 475, 556
Sau96I GGNCC 1 cut(s) 37
ScaI AGTACT 1 cut(s) 409
SchI GAGTC 2 cut(s) 653, 1069
ScrFI CCNGG 2 cut(s) 426, 561
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 5 cut(s) 364, 522, 911, 1009, 1080
SmiMI CAYNNNNRTG 3 cut(s) 102, 299, 699
SmlI CTYRAG 1 cut(s) 781
SmoI CTYRAG 1 cut(s) 781
SpeI ACTAGT 2 cut(s) 281, 707
Sse9I AATT 9 cut(s) 261, 450, 463, 629, 714, 773, 866, 1001, 1096
SseBI AGGCCT 1 cut(s) 354
SsiI CCGC 1 cut(s) 1105
SspMI CTAG 5 cut(s) 132, 225, 282, 708, 1016
StuI AGGCCT 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 424, 559
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 4 cut(s) 22, 101, 407, 698
TaiI ACGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 990
TasI AATT 9 cut(s) 261, 450, 463, 629, 714, 773, 866, 1001, 1096
TatI WGTACW 2 cut(s) 407, 572
TauI GCSGC 1 cut(s) 1107
TfiI GAWTC 3 cut(s) 419, 550, 987
Tru1I TTAA 3 cut(s) 156, 249, 345
Tru9I TTAA 3 cut(s) 156, 249, 345
TscAI CASTG 4 cut(s) 37, 49, 301, 703
TseFI GTSAC 5 cut(s) 292, 332, 703, 1072, 1115
TseI GCWGC 3 cut(s) 535, 625, 950
Tsp45I GTSAC 5 cut(s) 292, 332, 703, 1072, 1115
TspDTI ATGAA 7 cut(s) 174, 267, 336, 363, 432, 947, 960
TspGWI ACGGA 1 cut(s) 592
TspRI CASTG 4 cut(s) 37, 49, 301, 703
VneI GTGCAC 1 cut(s) 95
XapI RAATTY 4 cut(s) 450, 463, 714, 1001
XceI RCATGY 1 cut(s) 836
XspI CTAG 5 cut(s) 132, 225, 282, 708, 1016
ZrmI AGTACT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.