Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

17138508 .. 17139251

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTCCAAGTCGGAGTCATGGAAAATCATAAAAAAGTTCCACAAACAACAGAGTGGACATTAGAGCACCACAAGCTCTTCGTGGACCTCCTGCTCCAGTCCCGCGGGTTCGAGAAAGTCCGAGCGTTCATAGTAAGGAAGATGATGAAGACAGTGAAGGGTCTTACATGGTCGGCTGCGTTAGGCCATTCTCGTCACTTGGAATCACTACAAAGACAAACCCAATCTGCACTAGCACGCCGTCCACCCCGAAAATCTTCTTCTGATCTCAGAGTTTTGGTGGAGGATCTGGTGAGAGGCATGGAGGGTTTAACCATGGAACGCAATAAGCTGTCAACGTGGACACTTGAGCATCACAAGCGTGTGGTGGATGCTGTGGCAAAGGTGGGTGGCCTTGACATGGCAAGCCCCATTGAGAAGACGGCGGTTAGGGTTTTGAGACTGATGGATGAAGAGCGCCGTCAGGGTCTGACTGTACGGATGGTGACGAAGCATCTGATAGGGTTGCGCTTTTTACAGAAAAGAACTCAGGAGGCCATTGATAAAGCCGCGGGGAACAAAGCTAGACAGGGCTGCAGCGTCAAGAGGTCCAATAAAGTGAAATTGGGAAGAATAGAGAATAATAATGGAAAAAAAGAGTGTCACGGCCTTTCGGATCGTATGATCATGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.58

Weight (kDa)

10.64

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	105, 551
AciI	CCGC	5 cut(s)	103, 105, 425, 549, 551
AclWI	GGATC	2 cut(s)	294, 663
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	400
AleI	CACNNNNGTG	1 cut(s)	360
AluBI	AGCT	3 cut(s)	76, 331, 563
AluI	AGCT	3 cut(s)	76, 331, 563
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	2 cut(s)	294, 663
AlwNI	CAGNNNCTG	1 cut(s)	469
AoxI	GGCC	4 cut(s)	184, 391, 534, 646
ApeKI	GCWGC	3 cut(s)	176, 573, 576
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	2 cut(s)	459, 510
AspS9I	GGNCC	3 cut(s)	4, 85, 588
AsuHPI	GGTGA	2 cut(s)	304, 496
AvaII	GGWCC	3 cut(s)	4, 85, 588
BbsI	GAAGAC	2 cut(s)	155, 425
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	163, 560, 588
BccI	CCATC	2 cut(s)	439, 475
BceAI	ACGGC	4 cut(s)	225, 438, 444, 661
BclI	TGATCA	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	2 cut(s)	233, 564
BfmI	CTRYAG	1 cut(s)	574
BfoI	RGCGCY	1 cut(s)	460
BisI	GCNGC	4 cut(s)	177, 549, 574, 577
BlsI	GCNGC	4 cut(s)	178, 550, 575, 578
Bme18I	GGWCC	3 cut(s)	4, 85, 588
BmgT120I	GGNCC	3 cut(s)	4, 85, 588
BmsI	GCATC	3 cut(s)	361, 361, 502
BpiI	GAAGAC	2 cut(s)	155, 425
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	103, 315, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	97
BseDI	CCNNGG	3 cut(s)	103, 315, 549
BseGI	GGATG	3 cut(s)	376, 454, 486
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	283, 542
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	163, 560, 588
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	2 cut(s)	105, 551
BshFI	GGCC	4 cut(s)	186, 393, 536, 648
BsiHKAI	GWGCWC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	4 cut(s)	186, 393, 536, 648
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	4 cut(s)	265, 286, 655, 663
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	5 cut(s)	103, 105, 425, 549, 551
BspANI	GGCC	4 cut(s)	186, 393, 536, 648
BspCNI	CTCAG	2 cut(s)	282, 541
BspFNI	CGCG	2 cut(s)	105, 551
BspHI	TCATGA	1 cut(s)	666
BspMAI	CTGCAG	1 cut(s)	578
BspPI	GGATC	2 cut(s)	294, 663
BspQI	GCTCTTC	2 cut(s)	83, 447
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	103, 315, 549
BssMI	GATC	4 cut(s)	265, 286, 655, 663
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	154, 475
Bst6I	CTCTTC	2 cut(s)	83, 447
BstC8I	GCNNGC	2 cut(s)	238, 406
BstDEI	CTNAG	2 cut(s)	269, 528
BstDSI	CCRYGG	3 cut(s)	103, 315, 549
BstF5I	GGATG	3 cut(s)	376, 454, 486
BstFNI	CGCG	2 cut(s)	105, 551
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	2 cut(s)	459, 510
BstKTI	GATC	4 cut(s)	268, 289, 658, 666
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	265, 286, 655, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 358
BstSFI	CTRYAG	1 cut(s)	574
BstUI	CGCG	2 cut(s)	105, 551
BstV1I	GCAGC	3 cut(s)	163, 560, 588
BstV2I	GAAGAC	2 cut(s)	155, 425
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	186, 393, 536, 648
BtgI	CCRYGG	3 cut(s)	103, 315, 549
BtsCI	GGATG	3 cut(s)	376, 454, 486
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	238, 406
CaiI	CAGNNNCTG	1 cut(s)	469
CciI	TCATGA	1 cut(s)	666
CfoI	GCGC	2 cut(s)	459, 510
Cfr13I	GGNCC	3 cut(s)	4, 85, 588
Cfr42I	CCGCGG	2 cut(s)	106, 552
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	6 cut(s)	19, 168, 301, 316, 400, 667
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	2 cut(s)	269, 528
DpnI	GATC	4 cut(s)	267, 288, 657, 665
DpnII	GATC	4 cut(s)	265, 286, 655, 663
Eam1104I	CTCTTC	2 cut(s)	83, 447
EarI	CTCTTC	2 cut(s)	83, 447
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	3 cut(s)	4, 85, 588
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	6 cut(s)	22, 171, 304, 319, 403, 670
FaiI	YATR	9 cut(s)	20, 30, 131, 169, 302, 317, 401, 662, 668
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	6 cut(s)	18, 167, 300, 315, 399, 666
FauI	CCCGC	3 cut(s)	98, 110, 544
FbaI	TGATCA	1 cut(s)	663
Fnu4HI	GCNGC	4 cut(s)	177, 549, 574, 577
FokI	GGATG	3 cut(s)	383, 461, 493
Fsp4HI	GCNGC	4 cut(s)	177, 549, 574, 577
FspBI	CTAG	2 cut(s)	233, 564
GlaI	GCGC	2 cut(s)	458, 509
GluI	GCNGC	4 cut(s)	177, 549, 574, 577
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	4 cut(s)	186, 393, 536, 648
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	2 cut(s)	459, 510
Hin1II	CATG	6 cut(s)	22, 171, 304, 319, 403, 670
Hin6I	GCGC	2 cut(s)	457, 508
HinP1I	GCGC	2 cut(s)	457, 508
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	15, 203
HphI	GGTGA	2 cut(s)	304, 496
Hpy166II	GTNNAC	5 cut(s)	57, 85, 245, 336, 342
Hpy188I	TCNGA	7 cut(s)	14, 122, 265, 272, 471, 498, 655
Hpy188III	TCNNGA	4 cut(s)	112, 530, 583, 667
Hpy8I	GTNNAC	5 cut(s)	57, 85, 245, 336, 342
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	154, 475
HpyCH4IV	ACGT	2 cut(s)	338, 671
HpyCH4V	TGCA	2 cut(s)	230, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 358
HpyF3I	CTNAG	2 cut(s)	269, 528
HpySE526I	ACGT	2 cut(s)	338, 671
Hsp92II	CATG	6 cut(s)	22, 171, 304, 319, 403, 670
HspAI	GCGC	2 cut(s)	457, 508
Ksp22I	TGATCA	1 cut(s)	663
KspI	CCGCGG	2 cut(s)	106, 552
Kzo9I	GATC	4 cut(s)	265, 286, 655, 663
LguI	GCTCTTC	2 cut(s)	83, 447
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	6 cut(s)	104, 110, 275, 449, 515, 554
Lsp1109I	GCAGC	3 cut(s)	163, 560, 588
LweI	GCATC	3 cut(s)	361, 361, 502
MaeI	CTAG	2 cut(s)	233, 564
MaeII	ACGT	2 cut(s)	338, 671
MaeIII	GTNAC	3 cut(s)	194, 484, 641
MalI	GATC	4 cut(s)	267, 288, 657, 665
MboI	GATC	4 cut(s)	265, 286, 655, 663
MboII	GAAGA	8 cut(s)	70, 151, 160, 249, 252, 430, 464, 621
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	6 cut(s)	98, 277, 290, 298, 526, 579
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	2 cut(s)	105, 551
MvnI	CGCG	2 cut(s)	105, 551
MwoI	GCNNNNNNNGC	2 cut(s)	73, 358
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	4 cut(s)	265, 286, 655, 663
NlaIII	CATG	6 cut(s)	22, 171, 304, 319, 403, 670
NmuCI	GTSAC	3 cut(s)	194, 484, 641
OliI	CACNNNNGTG	1 cut(s)	360
PagI	TCATGA	1 cut(s)	666
PciSI	GCTCTTC	2 cut(s)	83, 447
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	178, 550, 575, 578
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PspPI	GGNCC	3 cut(s)	4, 85, 588
PstI	CTGCAG	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	360
SacII	CCGCGG	2 cut(s)	106, 552
SapI	GCTCTTC	2 cut(s)	83, 447
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	4 cut(s)	177, 549, 574, 577
Sau3AI	GATC	4 cut(s)	265, 286, 655, 663
Sau96I	GGNCC	3 cut(s)	4, 85, 588
SchI	GAGTC	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	8 cut(s)	78, 90, 333, 341, 387, 565, 590, 674
SfaNI	GCATC	3 cut(s)	361, 361, 502
SfcI	CTRYAG	1 cut(s)	574
Sfr303I	CCGCGG	2 cut(s)	106, 552
SgrBI	CCGCGG	2 cut(s)	106, 552
SinI	GGWCC	3 cut(s)	4, 85, 588
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	602
SsiI	CCGC	5 cut(s)	103, 105, 425, 549, 551
SspMI	CTAG	2 cut(s)	233, 564
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	154, 475
TaiI	ACGT	2 cut(s)	341, 674
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	602
TauI	GCSGC	1 cut(s)	551
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	3 cut(s)	194, 484, 641
TseI	GCWGC	3 cut(s)	176, 573, 576
Tsp45I	GTSAC	3 cut(s)	194, 484, 641
TspDTI	ATGAA	3 cut(s)	118, 161, 465
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	3 cut(s)	4, 85, 588
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	2 cut(s)	233, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.