RLG00000008621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000751
Physical Location & Seq
Forward (+)
33559954 .. 33560640
687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008621

Sequence Viewer

Length: 687 bp
ATGAACATGTTTCGGTTTGTGATTGAAGGAGATCACCAAGGAACAGCTACACCAAGGATGTTCGAGTGGACGTTGGAGCACCACAAGCAGTGCATGGATACTTTCATCCTCTTGGGTGGTGATAAAGAGAAAGTTGGAGTACACAATGCCTTAATGGCGGAGTTGTTGAGCCTGACGGGGTGTTGTTGTAGAAACTTTGACCTTGACTTCCACATTTCCTTGCTTGGGGTACTACAGAAAAGGTCTGAAGCATTATTTTCCAGTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTAAAAAGATGTCATCGTCATGGGCGCTGGAGCATCACTGGCAGGTCGTGGAGGCGGTGATACAACTCGGTGGGCTTAGCAATGGCAAGACTACCCTTAAGTCCATGCTGAAGTTGATAGATGAGGAAGACCGCCGCCAAGGCCTAACCTCAAAGATGGTAGCGCACCACCTTGTAGGGTTGAATAATTTGCAGAAGGAAACTCAACGGCTAATGGCATTTGGAATGGCCGGTGGTGAAGAAGAAATAGAGCTGTCGCTTAGGGAGCTCCAGTACCTTGTTTTTAAAGGATTTTCCCAACAACGAGATAGCGTTCTATACACAAATGTAAAAAATCCTCTATTCCGACAGCACCTGGGGATTACACCGGGTAAGATTACACATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.91

Weight (kDa)

7.18

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AccB1I GGYRCC 1 cut(s) 295
AciI CCGC 4 cut(s) 158, 353, 430, 433
AcoI YGGCCR 1 cut(s) 525
AcuI CTGAAG 2 cut(s) 267, 428
AfaI GTAC 3 cut(s) 141, 231, 572
AfiI CCNNNNNNNGG 2 cut(s) 225, 292
AflII CTTAAG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 3 cut(s) 26, 281, 481
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 3 cut(s) 47, 550, 565
AluI AGCT 3 cut(s) 47, 550, 565
Alw21I GWGCWC 2 cut(s) 81, 567
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 2 cut(s) 439, 525
AspLEI GCGC 2 cut(s) 325, 463
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 5 cut(s) 26, 131, 265, 367, 545
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 2 cut(s) 81, 567
BccI CCATC 1 cut(s) 448
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 1 cut(s) 653
BciVI GTATCC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 666
BfmI CTRYAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 326
BfrI CTTAAG 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 331
BfuI GTATCC 1 cut(s) 91
BglI GCCNNNNNGGC 2 cut(s) 155, 438
BisI GCNGC 1 cut(s) 433
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 2 cut(s) 653, 666
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 2 cut(s) 653, 666
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 432
BpmI CTGGAG 2 cut(s) 347, 551
Bpu10I CCTNAGC 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 666
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 4 cut(s) 37, 53, 436, 652
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 292
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 261, 341, 568
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 4 cut(s) 37, 53, 436, 652
BseGI GGATG 2 cut(s) 63, 105
BseLI CCNNNNNNNGG 2 cut(s) 225, 292
BseMI GCAATG 1 cut(s) 385
BseNI ACTGG 3 cut(s) 261, 341, 568
BshFI GGCC 2 cut(s) 441, 527
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 81, 567
BsiSI CCGG 2 cut(s) 528, 665
BslI CCNNNNNNNGG 2 cut(s) 225, 292
BsnI GGCC 2 cut(s) 441, 527
Bsp1286I GDGCHC 2 cut(s) 81, 567
Bsp143I GATC 1 cut(s) 31
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 4 cut(s) 158, 353, 430, 433
BspANI GGCC 2 cut(s) 441, 527
BspLI GGNNCC 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 295
BspTI CTTAAG 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 3 cut(s) 261, 341, 568
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 4 cut(s) 37, 53, 436, 652
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 3 cut(s) 37, 53, 436
Bst2UI CCWGG 1 cut(s) 653
BstAFI CTTAAG 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 374, 557
BstF5I GGATG 2 cut(s) 63, 105
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 2 cut(s) 325, 463
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 5 cut(s) 85, 155, 337, 438, 562
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 651, 664
BstSFI CTRYAG 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 432
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 2 cut(s) 441, 527
BtsCI GGATG 2 cut(s) 63, 105
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 95, 334
BveI ACCTGC 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 2 cut(s) 325, 463
Cfr10I RCCGGY 1 cut(s) 527
Csp6I GTAC 3 cut(s) 140, 230, 571
CviAII CATG 4 cut(s) 7, 94, 318, 403
CviJI RGCY 9 cut(s) 47, 171, 285, 373, 441, 508, 527, 550, 565
CviKI_1 RGCY 9 cut(s) 47, 171, 285, 373, 441, 508, 527, 550, 565
CviQI GTAC 3 cut(s) 140, 230, 571
DdeI CTNAG 2 cut(s) 374, 557
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DraI TTTAAA 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 525
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 3 cut(s) 37, 53, 436
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 567
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 2 cut(s) 267, 428
EcoICRI GAGCTC 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 3 cut(s) 37, 53, 436
EcoT38I GRGCYC 1 cut(s) 567
ErhI CCWWGG 3 cut(s) 37, 53, 436
FaeI CATG 4 cut(s) 10, 97, 321, 406
FaiI YATR 6 cut(s) 8, 95, 289, 319, 404, 616
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 4 cut(s) 6, 93, 317, 402
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 2 cut(s) 70, 92
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 1 cut(s) 433
GlaI GCGC 2 cut(s) 324, 462
GluI GCNGC 1 cut(s) 433
GsuI CTGGAG 2 cut(s) 347, 551
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 2 cut(s) 441, 527
HapII CCGG 2 cut(s) 528, 665
HhaI GCGC 2 cut(s) 325, 463
Hin1II CATG 4 cut(s) 10, 97, 321, 406
Hin6I GCGC 2 cut(s) 323, 461
HinP1I GCGC 2 cut(s) 323, 461
HpaII CCGG 2 cut(s) 528, 665
HphI GGTGA 5 cut(s) 26, 131, 265, 367, 545
Hpy166II GTNNAC 2 cut(s) 69, 142
Hpy188I TCNGA 2 cut(s) 247, 644
Hpy8I GTNNAC 2 cut(s) 69, 142
HpyAV CCTTC 2 cut(s) 20, 487
HpyCH4IV ACGT 2 cut(s) 71, 291
HpyCH4V TGCA 2 cut(s) 93, 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 155, 337, 438, 562
HpyF3I CTNAG 2 cut(s) 374, 557
HpySE526I ACGT 2 cut(s) 71, 291
Hsp92II CATG 4 cut(s) 10, 97, 321, 406
HspAI GCGC 2 cut(s) 323, 461
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 4 cut(s) 76, 328, 562, 570
LweI GCATC 1 cut(s) 340
MaeII ACGT 2 cut(s) 71, 291
MaeIII GTNAC 2 cut(s) 263, 271
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 3 cut(s) 437, 548, 551
MhlI GDGCHC 2 cut(s) 81, 567
MluCI AATT 1 cut(s) 484
MmeI TCCRAC 3 cut(s) 54, 115, 667
MnlI CCTC 5 cut(s) 119, 343, 415, 457, 645
MseI TTAA 4 cut(s) 152, 396, 582, 685
MslI CAYNNNNRTG 1 cut(s) 316
MspCI CTTAAG 1 cut(s) 395
MspI CCGG 2 cut(s) 528, 665
MspR9I CCNGG 2 cut(s) 653, 666
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 5 cut(s) 85, 155, 337, 438, 562
NciI CCSGG 1 cut(s) 666
NdeII GATC 1 cut(s) 31
NlaIII CATG 4 cut(s) 10, 97, 321, 406
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 10
PceI AGGCCT 1 cut(s) 441
PciI ACATGT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 434
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 652
RsaI GTAC 3 cut(s) 141, 231, 572
RsaNI GTAC 3 cut(s) 140, 230, 571
RseI CAYNNNNRTG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 4 cut(s) 152, 396, 582, 685
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 653, 666
SduI GDGCHC 2 cut(s) 81, 567
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 1 cut(s) 484
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 4 cut(s) 158, 353, 430, 433
SstI GAGCTC 1 cut(s) 567
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 651, 664
StyI CCWWGG 3 cut(s) 37, 53, 436
TaiI ACGT 2 cut(s) 74, 294
TaqI TCGA 1 cut(s) 63
TasI AATT 1 cut(s) 484
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 435
Tru1I TTAA 4 cut(s) 152, 396, 582, 685
Tru9I TTAA 4 cut(s) 152, 396, 582, 685
TscAI CASTG 2 cut(s) 95, 341
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 17, 94
TspRI CASTG 2 cut(s) 95, 341
Vha464I CTTAAG 1 cut(s) 395
XceI RCATGY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.