Rroxscaffold_4G00290880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000751
Physical Location & Seq
Reverse (-)
11345448 .. 11346260
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290880.1

Sequence Viewer

Length: 813 bp
ATGGAAGTCACTGACGGAGAAACCAGAAGAGACCCTTTGATCATAGGGTGGACGCTAGAGCACCACAAGCAGTTTTTAGAGTCGGTGGTCCGCAACGGTGGTTTTAACAAACCCTCAATTACTCCAATAGTAGTGCTGGACGTGCTGAACAAGGTGAACGGTCTTCGCCCGTATCCTATTGTGTACCACATGTTCTGGTTCCGAAAATTCCACAAAGAGAATGAATCCCTATTCAAGAAATTGCCGGAGTTTGATTCTTTGGTGAGAGATTTTGCAGGCCTAGGCGTGGAAGGAGCAAAGTGCTGGTCGTCATGGACGGTAGAGCATTACAAGGAGGTGGTGGAGGCTATTATACAGCTGGGTGGCCTAGGCAAGGCAACACCAGCGAAACTCCTGGAGTTGGTGGACCGCCGCCTTGGCCTCACAGTAGAGATTCTAGAGCACATACTTTCGAGGTTGGAAACTTTGCAGGAAAGAACTCAAGAAGCTACGTATGGCCACGGCGGTCCACTGCGGCCGGGTAGGCAGAGAGTGAGTGGTAATGTAGTTCATCCTTACACTCGAGAGAAAATAATAAGAGATGAATCTACGAAACTAGCCACTATTCTCAAATCAAAAGTAGATGAAACAATCATGAGCCTCCGGCAACTCACAAGAGAACAAATAATGGAATATTTGGAGGTAAAAGCAAGAGCAACAAGAGCAGAAAGAATGGAATATTTGGTGACAAGAGCAGCAAGAAGAATGGAAAATTTGGTGACAAAAATGGATCATATAAATTTGGGTCGAACCGGAAGTGAATCGAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

31.05

Weight (kDa)

9.06

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 91, 409, 412, 504, 514
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 2 cut(s) 496, 515
AcsI RAATTY 3 cut(s) 206, 751, 778
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 286, 373, 400
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 235
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 2 cut(s) 358, 488
AluI AGCT 2 cut(s) 358, 488
Alw21I GWGCWC 2 cut(s) 63, 444
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 777
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 5 cut(s) 277, 364, 418, 496, 515
ApeKI GCWGC 1 cut(s) 734
ApoI RAATTY 3 cut(s) 206, 751, 778
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspA2I CCTAGG 2 cut(s) 280, 367
AspS9I GGNCC 3 cut(s) 88, 406, 506
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 4 cut(s) 166, 274, 736, 769
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 3 cut(s) 88, 406, 506
AvrII CCTAGG 2 cut(s) 280, 367
BalI TGGCCA 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 63, 444
BbvI GCAGC 1 cut(s) 746
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 395
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 5 cut(s) 56, 281, 368, 437, 596
BfuI GTATCC 1 cut(s) 183
BglI GCCNNNNNGGC 2 cut(s) 417, 523
BisI GCNGC 3 cut(s) 412, 515, 735
BlnI CCTAGG 2 cut(s) 280, 367
BlsI GCNGC 3 cut(s) 413, 516, 736
Bme1390I CCNGG 2 cut(s) 395, 519
Bme18I GGWCC 3 cut(s) 88, 406, 506
BmeT110I CYCGRG 1 cut(s) 561
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 3 cut(s) 88, 406, 506
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 395, 519
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 280, 367, 415, 499
BsaWI WCCGGW 1 cut(s) 791
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 373, 400
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 4 cut(s) 280, 367, 415, 499
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 3 cut(s) 286, 373, 400
BseX3I CGGCCG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 746
BseYI CCCAGC 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 5 cut(s) 279, 366, 420, 498, 517
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 2 cut(s) 63, 444
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 4 cut(s) 245, 518, 643, 792
BslI CCNNNNNNNGG 3 cut(s) 286, 373, 400
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 5 cut(s) 279, 366, 420, 498, 517
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 561
Bsp1286I GDGCHC 2 cut(s) 63, 444
Bsp143I GATC 2 cut(s) 39, 769
BspACI CCGC 5 cut(s) 91, 409, 412, 504, 514
BspANI GGCC 5 cut(s) 279, 366, 420, 498, 517
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 1 cut(s) 777
BspTNI GGTCTC 1 cut(s) 24
BssECI CCNNGG 4 cut(s) 280, 367, 415, 499
BssMI GATC 2 cut(s) 39, 769
BssT1I CCWWGG 3 cut(s) 280, 367, 415
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 4 cut(s) 98, 161, 319, 427
Bst6I CTCTTC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 277
BstDSI CCRYGG 1 cut(s) 499
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 1 cut(s) 550
BstKTI GATC 2 cut(s) 42, 772
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 39, 769
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 6 cut(s) 67, 142, 383, 417, 523, 701
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 393, 517
BstSNI TACGTA 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 746
BstV2I GAAGAC 1 cut(s) 155
BstZI CGGCCG 1 cut(s) 515
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 5 cut(s) 279, 366, 420, 498, 517
BtgI CCRYGG 1 cut(s) 499
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 550
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 2 cut(s) 9, 509
Cac8I GCNNGC 1 cut(s) 277
CciI TCATGA 1 cut(s) 633
Cfr13I GGNCC 3 cut(s) 88, 406, 506
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 190, 312, 634
CviQI GTAC 1 cut(s) 184
DpnI GATC 2 cut(s) 41, 771
DpnII GATC 2 cut(s) 39, 769
EaeI YGGCCR 2 cut(s) 496, 515
EagI CGGCCG 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EclXI CGGCCG 1 cut(s) 515
Eco105I TACGTA 1 cut(s) 492
Eco130I CCWWGG 3 cut(s) 280, 367, 415
Eco147I AGGCCT 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 3 cut(s) 88, 406, 506
Eco52I CGGCCG 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 561
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 393
EcoT14I CCWWGG 3 cut(s) 280, 367, 415
ErhI CCWWGG 3 cut(s) 280, 367, 415
FaeI CATG 3 cut(s) 193, 315, 637
FaiI YATR 9 cut(s) 44, 191, 313, 353, 446, 495, 635, 774, 776
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 3 cut(s) 189, 311, 633
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 412, 515, 735
FokI GGATG 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 412, 515, 735
FspBI CTAG 5 cut(s) 56, 281, 368, 437, 596
GluI GCNGC 3 cut(s) 412, 515, 735
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 5 cut(s) 279, 366, 420, 498, 517
HapII CCGG 4 cut(s) 245, 518, 643, 792
HgaI GACGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 193, 315, 637
HinfI GANTC 6 cut(s) 80, 224, 254, 433, 584, 800
HpaII CCGG 4 cut(s) 245, 518, 643, 792
HphI GGTGA 4 cut(s) 166, 274, 736, 769
Hpy166II GTNNAC 5 cut(s) 51, 157, 184, 406, 509
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 5 cut(s) 235, 437, 482, 563, 634
Hpy8I GTNNAC 5 cut(s) 51, 157, 184, 406, 509
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 4 cut(s) 98, 161, 319, 427
HpyCH4IV ACGT 2 cut(s) 141, 491
HpyCH4V TGCA 2 cut(s) 275, 469
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 142, 383, 417, 523, 701
HpySE526I ACGT 2 cut(s) 141, 491
Hsp92II CATG 3 cut(s) 193, 315, 637
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 39, 769
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 1 cut(s) 746
MaeI CTAG 5 cut(s) 56, 281, 368, 437, 596
MaeII ACGT 2 cut(s) 141, 491
MaeIII GTNAC 3 cut(s) 7, 724, 757
MalI GATC 2 cut(s) 41, 771
MboI GATC 2 cut(s) 39, 769
MboII GAAGA 3 cut(s) 39, 155, 753
MhlI GDGCHC 2 cut(s) 63, 444
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 5 cut(s) 117, 206, 239, 751, 778
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 7 cut(s) 124, 328, 337, 431, 447, 650, 673
Mox20I TGGCCA 1 cut(s) 498
MscI TGGCCA 1 cut(s) 498
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 4 cut(s) 245, 518, 643, 792
MspR9I CCNGG 2 cut(s) 395, 519
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 6 cut(s) 67, 142, 383, 417, 523, 701
NciI CCSGG 1 cut(s) 519
NdeII GATC 2 cut(s) 39, 769
NlaIII CATG 3 cut(s) 193, 315, 637
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 3 cut(s) 7, 724, 757
NspI RCATGY 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 561
PagI TCATGA 1 cut(s) 633
PceI AGGCCT 1 cut(s) 279
PciI ACATGT 1 cut(s) 189
PfeI GAWTC 5 cut(s) 224, 254, 433, 584, 800
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 3 cut(s) 413, 516, 736
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 492
PscI ACATGT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 88, 406, 506
PsrI GAACNNNNNNTAC 2 cut(s) 176, 208
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 3 cut(s) 412, 515, 735
Sau3AI GATC 2 cut(s) 39, 769
Sau96I GGNCC 3 cut(s) 88, 406, 506
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 395, 519
SduI GDGCHC 2 cut(s) 63, 444
SetI ASST 8 cut(s) 144, 156, 339, 360, 458, 490, 494, 684
Sfr274I CTCGAG 1 cut(s) 561
SinI GGWCC 3 cut(s) 88, 406, 506
SlaI CTCGAG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 480, 561
SmoI CTYRAG 2 cut(s) 480, 561
SnaBI TACGTA 1 cut(s) 492
Sse9I AATT 5 cut(s) 117, 206, 239, 751, 778
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 5 cut(s) 91, 409, 412, 504, 514
SspI AATATT 2 cut(s) 674, 719
SspMI CTAG 5 cut(s) 56, 281, 368, 437, 596
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 393, 517
StyI CCWWGG 3 cut(s) 280, 367, 415
TaaI ACNGT 4 cut(s) 98, 161, 319, 427
TaiI ACGT 2 cut(s) 144, 494
TaqI TCGA 4 cut(s) 452, 562, 787, 803
TasI AATT 5 cut(s) 117, 206, 239, 751, 778
TauI GCSGC 2 cut(s) 414, 517
TfiI GAWTC 5 cut(s) 224, 254, 433, 584, 800
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 16, 516
TseFI GTSAC 3 cut(s) 7, 724, 757
TseI GCWGC 1 cut(s) 734
Tsp45I GTSAC 3 cut(s) 7, 724, 757
TspDTI ATGAA 4 cut(s) 237, 539, 597, 639
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 16, 516
VpaK11BI GGWCC 3 cut(s) 88, 406, 506
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 3 cut(s) 206, 751, 778
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 1 cut(s) 193
XhoI CTCGAG 1 cut(s) 561
XmaJI CCTAGG 2 cut(s) 280, 367
XspI CTAG 5 cut(s) 56, 281, 368, 437, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.