FvH4_7g21461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000751
Physical Location & Seq
Forward (+)
17180110 .. 17181589
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21461.t1

Sequence Viewer

Length: 879 bp
ATGGAAACGATGATCGGATTATATGCCCAAACAGCGATGTCCGGATATTATTCCCAAACAGGGTCTCTTCCGTTCAGCATAAGGTGGACGCTGGAGCACCACAAGCAGTTTTTGGAGTCGGTGGTCCGCAACGGTGGTTTGAACAAACCACAAATCAAGCAAATTGTATCACAGGACATTATGAGCAGGGTGTACGGTCTCCGCTCGTCTACCATTCAACTCCACATGGACTATTTCCGGCAATTCCACCAACAGAATGAATCCCTCTTCAAGAAGTTGCCGGAGTTTGATTCTTTGGTGAGAGATTTTGCAGGCCTAGGCGTGGAAGGAGCAAATAACTGCTGGTCGTCATGGACAGTCGAGCACTATAAGGAGGTGGTGGAGAAGATAATACAGCTGGGGGGCCTTGGTGTTGCGACCCCAGATAAGGTCCTGGCGCTGATGGACCGCCGCCTTGGCCTCACAGAAGAGATTCTAGGACACATACTTTCGAGGTTAAAAATGTTGCAGGAAAGGACTCGAATAGAGACGAGGTTGGAAATTTTGAATGAACGGCTAACTCGAATACAGGCCTACGGCCACGGCGGTCCGATGCGGCCTGTTATCCTGCAACGACTGGGTCGTAATGTTGTTCATCCTTACAGTCGAGAAAAAATAATAGGAGATGAATCTACGACACTAGCCACAATTATCAAATCAAAAATAGATGAAACAATCATGAGCCTCCGGCAACTCGTGGCAGCACATAGAAGAGAAAGAGGAGACATAGTGGAGTATTTGGTGACAAGGGCAGAACCTAGAGAAGAAAAAATGGAAAATTTGGTGACAAAAATGGATCATATAAATTTGGGTCGATCAGGAAGTGCATCGAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.43

Weight (kDa)

9.34

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 204
AccI GTMKAC 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 41
AciI CCGC 6 cut(s) 127, 202, 448, 451, 585, 595
AclWI GGATC 1 cut(s) 843
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 3 cut(s) 540, 817, 844
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 3 cut(s) 60, 322, 427
AgsI TTSAA 4 cut(s) 142, 218, 271, 547
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw21I GWGCWC 2 cut(s) 99, 366
Alw26I GTCTC 4 cut(s) 69, 203, 521, 756
AlwI GGATC 1 cut(s) 843
Aor13HI TCCGGA 1 cut(s) 41
AoxI GGCC 6 cut(s) 313, 403, 457, 570, 577, 596
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 3 cut(s) 540, 817, 844
Asp700I GAANNNNTTC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 5 cut(s) 124, 403, 430, 445, 587
AsuHPI GGTGA 3 cut(s) 310, 793, 835
AvaII GGWCC 4 cut(s) 124, 430, 445, 587
AvrII CCTAGG 1 cut(s) 316
BauI CACGAG 1 cut(s) 734
Bbv12I GWGCWC 2 cut(s) 99, 366
BbvI GCAGC 1 cut(s) 752
BccI CCATC 1 cut(s) 436
BceAI ACGGC 3 cut(s) 569, 592, 598
BciT130I CCWGG 1 cut(s) 434
BcoDI GTCTC 4 cut(s) 69, 203, 521, 756
BfaI CTAG 4 cut(s) 317, 476, 680, 798
BfoI RGCGCY 1 cut(s) 440
BglI GCCNNNNNGGC 1 cut(s) 456
BisI GCNGC 3 cut(s) 451, 596, 741
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 3 cut(s) 452, 597, 742
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 4 cut(s) 124, 430, 445, 587
BmgT120I GGNCC 5 cut(s) 124, 403, 430, 445, 587
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 1 cut(s) 434
BmrI ACTGGG 1 cut(s) 626
BmsI GCATC 2 cut(s) 582, 875
BmuI ACTGGG 1 cut(s) 626
BpmI CTGGAG 1 cut(s) 113
BsaI GGTCTC 2 cut(s) 69, 203
BsaJI CCNNGG 4 cut(s) 316, 406, 454, 580
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 322, 427
Bse1I ACTGG 1 cut(s) 621
BseAI TCCGGA 1 cut(s) 41
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 4 cut(s) 316, 406, 454, 580
BseGI GGATG 1 cut(s) 634
BseLI CCNNNNNNNGG 3 cut(s) 60, 322, 427
BseNI ACTGG 1 cut(s) 621
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 1 cut(s) 752
BseYI CCCAGC 1 cut(s) 397
BshFI GGCC 6 cut(s) 315, 405, 459, 572, 579, 598
BsiHKAI GWGCWC 2 cut(s) 99, 366
BsiSI CCGG 4 cut(s) 42, 238, 281, 727
BslI CCNNNNNNNGG 3 cut(s) 60, 322, 427
BsmAI GTCTC 4 cut(s) 69, 203, 521, 756
BsmBI CGTCTC 1 cut(s) 521
BsnI GGCC 6 cut(s) 315, 405, 459, 572, 579, 598
Bso31I GGTCTC 2 cut(s) 69, 203
Bsp1286I GDGCHC 2 cut(s) 99, 366
Bsp13I TCCGGA 1 cut(s) 41
Bsp143I GATC 3 cut(s) 12, 835, 854
BspACI CCGC 6 cut(s) 127, 202, 448, 451, 585, 595
BspANI GGCC 6 cut(s) 315, 405, 459, 572, 579, 598
BspEI TCCGGA 1 cut(s) 41
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 1 cut(s) 404
BspPI GGATC 1 cut(s) 843
BspTNI GGTCTC 2 cut(s) 69, 203
BsrBI CCGCTC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 4 cut(s) 316, 406, 454, 580
BssMI GATC 3 cut(s) 12, 835, 854
BssSI CACGAG 1 cut(s) 734
BssT1I CCWWGG 3 cut(s) 316, 406, 454
Bst2BI CACGAG 1 cut(s) 734
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 4 cut(s) 134, 197, 358, 644
Bst6I CTCTTC 4 cut(s) 72, 272, 462, 745
BstC8I GCNNGC 1 cut(s) 313
BstDSI CCRYGG 1 cut(s) 580
BstF5I GGATG 1 cut(s) 634
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 3 cut(s) 15, 838, 857
BstMAI GTCTC 4 cut(s) 69, 203, 521, 756
BstMBI GATC 3 cut(s) 12, 835, 854
BstMWI GCNNNNNNNGC 3 cut(s) 32, 103, 456
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 752
BsuRI GGCC 6 cut(s) 315, 405, 459, 572, 579, 598
BtgI CCRYGG 1 cut(s) 580
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 313
CciI TCATGA 1 cut(s) 717
CfoI GCGC 1 cut(s) 439
Cfr13I GGNCC 5 cut(s) 124, 403, 430, 445, 587
CpoI CGGWCCG 1 cut(s) 587
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 193
CspI CGGWCCG 1 cut(s) 587
CviAII CATG 3 cut(s) 226, 351, 718
CviQI GTAC 1 cut(s) 193
DpnI GATC 3 cut(s) 14, 837, 856
DpnII GATC 3 cut(s) 12, 835, 854
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 4 cut(s) 72, 272, 462, 745
EarI CTCTTC 4 cut(s) 72, 272, 462, 745
Eco130I CCWWGG 3 cut(s) 316, 406, 454
Eco147I AGGCCT 2 cut(s) 315, 572
Eco31I GGTCTC 2 cut(s) 69, 203
Eco47I GGWCC 4 cut(s) 124, 430, 445, 587
EcoO109I RGGNCCY 2 cut(s) 403, 430
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 3 cut(s) 316, 406, 454
ErhI CCWWGG 3 cut(s) 316, 406, 454
Esp3I CGTCTC 1 cut(s) 521
FaeI CATG 3 cut(s) 229, 354, 721
FatI CATG 3 cut(s) 225, 350, 717
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 451, 596, 741
FokI GGATG 1 cut(s) 621
Fsp4HI GCNGC 3 cut(s) 451, 596, 741
FspBI CTAG 4 cut(s) 317, 476, 680, 798
GlaI GCGC 1 cut(s) 438
GluI GCNGC 3 cut(s) 451, 596, 741
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 6 cut(s) 315, 405, 459, 572, 579, 598
HapII CCGG 4 cut(s) 42, 238, 281, 727
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 439
Hin1II CATG 3 cut(s) 229, 354, 721
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HinfI GANTC 6 cut(s) 116, 260, 290, 472, 517, 668
HpaII CCGG 4 cut(s) 42, 238, 281, 727
HphI GGTGA 3 cut(s) 310, 793, 835
Hpy166II GTNNAC 3 cut(s) 87, 193, 210
Hpy188I TCNGA 2 cut(s) 17, 591
Hpy188III TCNNGA 5 cut(s) 42, 271, 647, 718, 858
Hpy8I GTNNAC 3 cut(s) 87, 193, 210
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 4 cut(s) 134, 197, 358, 644
HpyCH4V TGCA 4 cut(s) 311, 508, 610, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 103, 456
Hsp92II CATG 3 cut(s) 229, 354, 721
HspAI GCGC 1 cut(s) 437
Kpn2I TCCGGA 1 cut(s) 41
Kzo9I GATC 3 cut(s) 12, 835, 854
LmnI GCTCC 2 cut(s) 94, 329
Lsp1109I GCAGC 1 cut(s) 752
LweI GCATC 2 cut(s) 582, 875
MaeI CTAG 4 cut(s) 317, 476, 680, 798
MaeIII GTNAC 2 cut(s) 781, 823
MalI GATC 3 cut(s) 14, 837, 856
MbiI CCGCTC 1 cut(s) 204
MboI GATC 3 cut(s) 12, 835, 854
MboII GAAGA 6 cut(s) 59, 259, 397, 479, 762, 815
MhlI GDGCHC 2 cut(s) 99, 366
MluCI AATT 6 cut(s) 162, 242, 540, 687, 817, 844
MlyI GAGTC 2 cut(s) 125, 511
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 7 cut(s) 275, 367, 470, 486, 525, 734, 752
MroI TCCGGA 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 4 cut(s) 42, 238, 281, 727
MspR9I CCNGG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 3 cut(s) 32, 103, 456
NdeII GATC 3 cut(s) 12, 835, 854
NlaIII CATG 3 cut(s) 229, 354, 721
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 2 cut(s) 781, 823
PagI TCATGA 1 cut(s) 717
PceI AGGCCT 2 cut(s) 315, 572
PcsI WCGNNNNNNNCGW 2 cut(s) 559, 619
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 4 cut(s) 260, 290, 472, 668
PflFI GACNNNGTC 1 cut(s) 618
PkrI GCNGC 3 cut(s) 452, 597, 742
PleI GAGTC 2 cut(s) 124, 511
PpsI GAGTC 2 cut(s) 124, 511
PpuMI RGGWCCY 1 cut(s) 430
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 5 cut(s) 124, 403, 430, 445, 587
PspPPI RGGWCCY 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
Rsr2I CGGWCCG 1 cut(s) 587
RsrII CGGWCCG 1 cut(s) 587
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 3 cut(s) 451, 596, 741
Sau3AI GATC 3 cut(s) 12, 835, 854
Sau96I GGNCC 5 cut(s) 124, 403, 430, 445, 587
SchI GAGTC 2 cut(s) 125, 511
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 2 cut(s) 99, 366
SetI ASST 7 cut(s) 86, 378, 399, 432, 497, 536, 799
SfaNI GCATC 2 cut(s) 582, 875
SinI GGWCC 4 cut(s) 124, 430, 445, 587
Sse9I AATT 6 cut(s) 162, 242, 540, 687, 817, 844
SseBI AGGCCT 2 cut(s) 315, 572
SsiI CCGC 6 cut(s) 127, 202, 448, 451, 585, 595
SspMI CTAG 4 cut(s) 317, 476, 680, 798
StuI AGGCCT 2 cut(s) 315, 572
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 3 cut(s) 316, 406, 454
TaaI ACNGT 4 cut(s) 134, 197, 358, 644
TaqI TCGA 7 cut(s) 360, 491, 520, 562, 646, 853, 869
TasI AATT 6 cut(s) 162, 242, 540, 687, 817, 844
TauI GCSGC 2 cut(s) 453, 598
TfiI GAWTC 4 cut(s) 260, 290, 472, 668
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TseFI GTSAC 2 cut(s) 781, 823
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 2 cut(s) 781, 823
TspDTI ATGAA 5 cut(s) 273, 564, 623, 681, 723
TspGWI ACGGA 1 cut(s) 60
Tth111I GACNNNGTC 1 cut(s) 618
VpaK11BI GGWCC 4 cut(s) 124, 430, 445, 587
XapI RAATTY 3 cut(s) 540, 817, 844
XmaJI CCTAGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 4 cut(s) 317, 476, 680, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.