Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

20459459 .. 20460088

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAACATATCTCGCTTCCGGGTCGAAGGAGATCGGCAAGAAACATCTTCACCAAAAATGTTTGAGTGGATGTTGGAGCACCACAAGAAGTGTGTTGACACCTTCATCTTGTTGGGCGGTGATAAAGAAAAAGTCGGAGTACACAATGCCCTAAAGGTGGAGCTGTTGAGCCTGGCAGGATGTTGTTGTAGAAGCTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTGCTACAAAAAAGCTCTGAAGTATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTCATGGACGTTGGAGCATCACCGGCGGGTTGTGGAGGCGGTGATACAGCTCGGTGGGCTTAGCAGTAGCAAGACTACCCCAAAGGCCGTGCTAAAGCTGATGGATGAGGAGGACCGCTGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGACTAATTGCTTTTGGATTGGCTGGTGGTGAAGAAGAAAGAGAGCTAGCGCTTAGGGAGCTCCGGTACCTTGTTTTTACTGGATTGCCCCAACAGCAGTATAGCGTTCTATACACAAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

209

Amino Acids

23.77

Weight (kDa)

8.24

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	628
Acc65I	GGTACC	1 cut(s)	570
AccB1I	GGYRCC	2 cut(s)	295, 570
AccB7I	CCANNNNNTGG	1 cut(s)	472
AciI	CCGC	4 cut(s)	117, 340, 353, 430
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	141, 572
AfeI	AGCGCT	1 cut(s)	555
AfiI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	7 cut(s)	163, 195, 243, 364, 412, 550, 565
AluI	AGCT	7 cut(s)	163, 195, 243, 364, 412, 550, 565
Alw21I	GWGCWC	2 cut(s)	81, 567
Aor51HI	AGCGCT	1 cut(s)	555
AoxI	GGCC	2 cut(s)	399, 439
ApeKI	GCWGC	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	570
AspLEI	GCGC	2 cut(s)	463, 556
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	7 cut(s)	42, 131, 265, 326, 367, 436, 545
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	427
BanI	GGYRCC	2 cut(s)	295, 570
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	81, 567
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	386
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	557
BisI	GCNGC	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	20, 173
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	297, 572
BmrFI	CCNGG	2 cut(s)	20, 173
BmsI	GCATC	1 cut(s)	340
BmtI	GCTAGC	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	557
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	3 cut(s)	75, 185, 424
BseLI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	2 cut(s)	401, 441
BshNI	GGYRCC	2 cut(s)	295, 570
BsiHKAI	GWGCWC	2 cut(s)	81, 567
BsiSI	CCGG	3 cut(s)	19, 337, 568
BslI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
BsnI	GGCC	2 cut(s)	401, 441
Bsp1286I	GDGCHC	2 cut(s)	81, 567
Bsp143I	GATC	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	4 cut(s)	117, 340, 353, 430
BspANI	GGCC	2 cut(s)	401, 441
BspLI	GGNNCC	2 cut(s)	297, 572
BspOI	GCTAGC	1 cut(s)	554
BspT107I	GGYRCC	2 cut(s)	295, 570
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	374, 557
BstF5I	GGATG	3 cut(s)	75, 185, 424
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	2 cut(s)	463, 556
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	6 cut(s)	229, 337, 370, 438, 562, 598
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	18, 171
BstV1I	GCAGC	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	401, 441
BtsCI	GGATG	3 cut(s)	75, 185, 424
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	2 cut(s)	463, 556
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	140, 571
CviAII	CATG	1 cut(s)	318
CviQI	GTAC	2 cut(s)	140, 571
DdeI	CTNAG	2 cut(s)	374, 557
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	436
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	427
Eco47III	AGCGCT	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	1 cut(s)	321
FaiI	YATR	6 cut(s)	8, 289, 319, 606, 616, 628
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	1 cut(s)	317
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	3 cut(s)	82, 192, 431
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	2 cut(s)	462, 555
GluI	GCNGC	1 cut(s)	433
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	401, 441
HapII	CCGG	3 cut(s)	19, 337, 568
HhaI	GCGC	2 cut(s)	463, 556
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	2 cut(s)	461, 554
HinP1I	GCGC	2 cut(s)	461, 554
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	193
HpaII	CCGG	3 cut(s)	19, 337, 568
HphI	GGTGA	7 cut(s)	42, 131, 265, 326, 367, 436, 545
Hpy166II	GTNNAC	2 cut(s)	97, 142
Hpy188I	TCNGA	2 cut(s)	137, 247
Hpy8I	GTNNAC	2 cut(s)	97, 142
HpyAV	CCTTC	3 cut(s)	20, 112, 487
HpyCH4IV	ACGT	2 cut(s)	291, 323
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	6 cut(s)	229, 337, 370, 438, 562, 598
HpyF3I	CTNAG	2 cut(s)	374, 557
HpySE526I	ACGT	2 cut(s)	291, 323
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	2 cut(s)	461, 554
KpnI	GGTACC	1 cut(s)	574
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	5 cut(s)	76, 160, 328, 562, 570
LpnPI	CCDG	8 cut(s)	32, 158, 162, 185, 350, 513, 570, 581
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	2 cut(s)	291, 323
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	3 cut(s)	39, 548, 551
MhlI	GDGCHC	2 cut(s)	81, 567
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	3 cut(s)	54, 115, 306
MnlI	CCTC	6 cut(s)	271, 309, 343, 415, 418, 452
MslI	CAYNNNNRTG	2 cut(s)	316, 452
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	3 cut(s)	19, 337, 568
MspR9I	CCNGG	2 cut(s)	20, 173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	6 cut(s)	229, 337, 370, 438, 562, 598
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	31
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	2 cut(s)	297, 572
NmuCI	GTSAC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	292
PsiI	TTATAA	1 cut(s)	628
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	297, 572
PspPI	GGNCC	1 cut(s)	427
RsaI	GTAC	2 cut(s)	141, 572
RsaNI	GTAC	2 cut(s)	140, 571
RseI	CAYNNNNRTG	2 cut(s)	316, 452
SacI	GAGCTC	1 cut(s)	567
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	20, 173
SduI	GDGCHC	2 cut(s)	81, 567
SfaNI	GCATC	1 cut(s)	340
SgrAI	CRCCGGYG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	2 cut(s)	316, 452
Sse9I	AATT	1 cut(s)	510
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	4 cut(s)	117, 340, 353, 430
SspMI	CTAG	1 cut(s)	551
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	18, 171
StyI	CCWWGG	1 cut(s)	436
TaiI	ACGT	2 cut(s)	294, 326
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 94
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	427
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.