Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

17178831 .. 17179739

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATGTGAATGGGGATCGTCAAGAATCAACGGAGTGGACGCTGGAGCACCATAAGACATTTGTAGACGTAGTGATCCGGCTTGGCGGCTTTAACAAAATCGGAACACCGAGGAGCGTAGTAGTAGAGATGATGAACAATGTGAAGGGTCTTTCACAAAGAACCCTAGTGCACCACATGGTTTTGTTTCAGCTACTAAACAAACGAACCCATTTATCATTAGGTCGCAGAAGCCAACTTGCTTGTTCTGATCCTTACCAGAGTTTGGTGAACGATTTTGAGGGCCTGCAAGTGGCGACTCCTAAGAGGCTGTTGTCATCGTGGACGGTGGAACATCACAAGCGGGTCGTGGAGGCTGTGACAAAGCTCGGTGGTCTGAGCAAGGCAACCCCGACGGCGGTTCTCAGGCTGATGGATGAGGAGCGCCGGCAGGGCCTCACCGTACGGATACTGAGGCGCCATCTTTTAGGTTTGCGGTATTTACAGAAGAAAACTCAGAAGACTATTCATGAGTCTAGTCAGGGCAAGGCTTGGATAAATAGGAAAGTCAGTACCAAATTCAAAATTTTGTATAACATTCAGTCATTGACATTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

200

Amino Acids

22.86

Weight (kDa)

10.48

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	4 cut(s)	87, 343, 398, 475
AclWI	GGATC	3 cut(s)	24, 70, 245
AcsI	RAATTY	2 cut(s)	557, 564
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	2 cut(s)	444, 553
AfiI	CCNNNNNNNGG	3 cut(s)	265, 292, 397
AgsI	TTSAA	1 cut(s)	562
AluBI	AGCT	2 cut(s)	193, 367
AluI	AGCT	2 cut(s)	193, 367
Alw21I	GWGCWC	2 cut(s)	51, 174
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	24, 70, 245
AoxI	GGCC	2 cut(s)	283, 433
ApaLI	GTGCAC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	557, 564
AseI	ATTAAT	1 cut(s)	593
AspLEI	GCGC	2 cut(s)	426, 459
AspS9I	GGNCC	2 cut(s)	283, 433
AsuHPI	GGTGA	2 cut(s)	280, 430
BaeGI	GKGCMC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	2 cut(s)	51, 174
BccI	CCATC	2 cut(s)	406, 468
BceAI	ACGGC	1 cut(s)	411
BciVI	GTATCC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	167, 516
BfoI	RGCGCY	2 cut(s)	427, 460
BfuI	GTATCC	1 cut(s)	441
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	283, 433
BmiI	GGNNCC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 292, 397
Bse118I	RCCGGY	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	10, 421
BseLI	CCNNNNNNNGG	3 cut(s)	265, 292, 397
BseMII	CTCAG	4 cut(s)	368, 418, 443, 509
BseRI	GAGGAG	2 cut(s)	127, 434
BseSI	GKGCMC	1 cut(s)	174
BshFI	GGCC	2 cut(s)	285, 435
BshNI	GGYRCC	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	51, 174
BsiSI	CCGG	2 cut(s)	79, 427
BsiWI	CGTACG	1 cut(s)	442
BslI	CCNNNNNNNGG	3 cut(s)	265, 292, 397
BsnI	GGCC	2 cut(s)	285, 435
Bsp1286I	GDGCHC	2 cut(s)	51, 174
Bsp143I	GATC	3 cut(s)	16, 75, 250
BspACI	CCGC	4 cut(s)	87, 343, 398, 475
BspANI	GGCC	2 cut(s)	285, 435
BspCNI	CTCAG	4 cut(s)	369, 417, 444, 508
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	458
BspPI	GGATC	3 cut(s)	24, 70, 245
BspT107I	GGYRCC	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	3 cut(s)	16, 75, 250
BssNI	GRCGYC	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	328, 442
BstACI	GRCGYC	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	287, 428
BstDEI	CTNAG	5 cut(s)	303, 377, 404, 452, 495
BstF5I	GGATG	2 cut(s)	10, 421
BstH2I	RGCGCY	2 cut(s)	427, 460
BstHHI	GCGC	2 cut(s)	426, 459
BstKTI	GATC	3 cut(s)	19, 78, 253
BstMBI	GATC	3 cut(s)	16, 75, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	285, 435
BtsCI	GGATG	2 cut(s)	10, 421
Cac8I	GCNNGC	2 cut(s)	287, 428
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	2 cut(s)	426, 459
Cfr10I	RCCGGY	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	283, 433
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	443, 552
CviAII	CATG	2 cut(s)	178, 509
CviQI	GTAC	2 cut(s)	443, 552
DdeI	CTNAG	5 cut(s)	303, 377, 404, 452, 495
DinI	GGCGCC	1 cut(s)	458
DpnI	GATC	3 cut(s)	18, 77, 252
DpnII	GATC	3 cut(s)	16, 75, 250
EcoO109I	RGGNCCY	2 cut(s)	283, 433
EgeI	GGCGCC	1 cut(s)	458
EheI	GGCGCC	1 cut(s)	458
FaeI	CATG	2 cut(s)	181, 512
FaiI	YATR	4 cut(s)	54, 179, 510, 573
FatI	CATG	2 cut(s)	177, 508
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	2 cut(s)	17, 428
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	167, 516
GlaI	GCGC	2 cut(s)	425, 458
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	2 cut(s)	427, 460
HaeIII	GGCC	2 cut(s)	285, 435
HapII	CCGG	2 cut(s)	79, 427
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	426, 459
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	181, 512
Hin6I	GCGC	2 cut(s)	424, 457
HinP1I	GCGC	2 cut(s)	424, 457
HinfI	GANTC	3 cut(s)	26, 298, 512
HpaII	CCGG	2 cut(s)	79, 427
HphI	GGTGA	2 cut(s)	280, 430
Hpy166II	GTNNAC	5 cut(s)	39, 67, 172, 271, 324
Hpy188I	TCNGA	4 cut(s)	104, 250, 378, 498
Hpy188III	TCNNGA	2 cut(s)	23, 509
Hpy8I	GTNNAC	5 cut(s)	39, 67, 172, 271, 324
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	328, 442
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	172, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	5 cut(s)	303, 377, 404, 452, 495
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	2 cut(s)	181, 512
HspAI	GCGC	2 cut(s)	424, 457
KasI	GGCGCC	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	426
KroNI	GCCGGC	1 cut(s)	428
Kzo9I	GATC	3 cut(s)	16, 75, 250
LmnI	GCTCC	3 cut(s)	46, 114, 421
LpnPI	CCDG	8 cut(s)	29, 92, 272, 299, 391, 416, 440, 506
MaeI	CTAG	2 cut(s)	167, 516
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	3 cut(s)	18, 77, 252
MboI	GATC	3 cut(s)	16, 75, 250
MboII	GAAGA	2 cut(s)	499, 511
MhlI	GDGCHC	2 cut(s)	51, 174
MluCI	AATT	3 cut(s)	557, 564, 594
Mly113I	GGCGCC	1 cut(s)	457
MlyI	GAGTC	2 cut(s)	292, 521
MnlI	CCTC	7 cut(s)	105, 274, 300, 346, 412, 446, 447
MroNI	GCCGGC	1 cut(s)	426
MseI	TTAA	3 cut(s)	93, 593, 598
MspI	CCGG	2 cut(s)	79, 427
MwoI	GCNNNNNNNGC	1 cut(s)	432
NaeI	GCCGGC	1 cut(s)	428
NarI	GGCGCC	1 cut(s)	457
NdeII	GATC	3 cut(s)	16, 75, 250
NgoMIV	GCCGGC	1 cut(s)	426
NlaIII	CATG	2 cut(s)	181, 512
NlaIV	GGNNCC	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	508
PdiI	GCCGGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	26
Pfl23II	CGTACG	1 cut(s)	442
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	292, 520
PluTI	GGCGCC	1 cut(s)	460
PpsI	GAGTC	2 cut(s)	292, 520
PshBI	ATTAAT	1 cut(s)	593
PspLI	CGTACG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	283, 433
RsaI	GTAC	2 cut(s)	444, 553
RsaNI	GTAC	2 cut(s)	443, 552
SaqAI	TTAA	3 cut(s)	93, 593, 598
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	3 cut(s)	16, 75, 250
Sau96I	GGNCC	2 cut(s)	283, 433
SchI	GAGTC	2 cut(s)	292, 521
SduI	GDGCHC	2 cut(s)	51, 174
SetI	ASST	5 cut(s)	72, 195, 226, 369, 472
SfoI	GGCGCC	1 cut(s)	458
Sse9I	AATT	3 cut(s)	557, 564, 594
SsiI	CCGC	4 cut(s)	87, 343, 398, 475
SspDI	GGCGCC	1 cut(s)	456
SspMI	CTAG	2 cut(s)	167, 516
TaaI	ACNGT	2 cut(s)	328, 442
TaiI	ACGT	1 cut(s)	72
TasI	AATT	3 cut(s)	557, 564, 594
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	93, 593, 598
Tru9I	TTAA	3 cut(s)	93, 593, 598
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	149, 497
TspGWI	ACGGA	2 cut(s)	47, 460
Van91I	CCANNNNNTGG	1 cut(s)	265
VneI	GTGCAC	1 cut(s)	170
VspI	ATTAAT	1 cut(s)	593
XapI	RAATTY	2 cut(s)	557, 564
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	2 cut(s)	167, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.