Rh1DG326200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000751
Physical Location & Seq
Forward (+)
55128043 .. 55128744
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG326200.1

Sequence Viewer

Length: 702 bp
ATGGCGTTGCAGAAGCAAACAATTTCTGAAAACATGGTCCAAGTCGGAGTCATGGGAAATCAGAAAAACGTTCCACAAACAATAGAGTGGACAATAGAGCACCACAAGCTCTTCGTGGACCTGCTGCTCCAGTCCGGCGGTTTCGAGAAAGTTCGCGCGTTCATACTAAAGAGGATGATGAAGACAGTGAAGGGTCTTACATGGTCAGCTGCGTTAGACCATTCTCGCCAGTTGGAACAACTACAGAAGCAAACTCAATCAGTTCTATTACGTCGTCCACCCCGAAAACCTTCTTGTAAACTCAGTGTTTTGGTGGACGATTTGGTGAGAGACTTGGAGGGTCTAATCATGGAACGTAAGCTGTCAACGTGGACACTCGAGCATCACAAGCGTGTGGTGGATGCTTTGGCAAAGGTGGGTGGCCTTGACATGGCAAACCCCATGGAGAAGACGGCGGTTAGGGTTTTGAGACTGATGGAAGAAGAGCGCCGCCAGGGTCTCACCGCACGGATGGTAACGAAGCATCTGATAGGGTTGCGCTATTTACAGAGGAGAACTCAGGAGGCCATTGTTAAAGCGGCAGAGAATAAAGCTAAACATGGCTGCAGCGTCAGGAGGCCCAAAAAAGTGAAGGTGGGAAGAAAAAAAAATAATAATCGACCAGCAGAGTGTCATGGCCTTTCGAATCATACGCTGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.66

Weight (kDa)

10.43

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 129
AccII CGCG 2 cut(s) 156, 158
AciI CCGC 5 cut(s) 138, 455, 490, 504, 578
AclI AACGTT 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 430
AjnI CCWGG 1 cut(s) 492
AleI CACNNNNGTG 1 cut(s) 390
AluBI AGCT 4 cut(s) 109, 209, 361, 593
AluI AGCT 4 cut(s) 109, 209, 361, 593
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 3 cut(s) 324, 463, 503
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 4 cut(s) 421, 564, 617, 676
ApeKI GCWGC 4 cut(s) 124, 209, 603, 606
Asp700I GAANNNNTTC 1 cut(s) 289
AspLEI GCGC 3 cut(s) 158, 489, 540
AspS9I GGNCC 3 cut(s) 37, 118, 618
AsuHPI GGTGA 2 cut(s) 337, 493
AsuII TTCGAA 1 cut(s) 683
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 37, 118
BbsI GAAGAC 2 cut(s) 188, 455
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 111, 196, 590, 618
BccI CCATC 2 cut(s) 469, 505
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 324, 463, 503
BfmI CTRYAG 2 cut(s) 242, 604
BfoI RGCGCY 1 cut(s) 490
BfuAI ACCTGC 1 cut(s) 129
BisI GCNGC 6 cut(s) 125, 210, 490, 579, 604, 607
BlsI GCNGC 6 cut(s) 126, 211, 491, 580, 605, 608
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 2 cut(s) 37, 118
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 37, 118, 618
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 3 cut(s) 391, 391, 532
BpiI GAAGAC 2 cut(s) 188, 455
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BpmI CTGGAG 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 2 cut(s) 441, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 130, 229
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 2 cut(s) 441, 493
BseGI GGATG 3 cut(s) 180, 406, 516
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 2 cut(s) 316, 572
BseNI ACTGG 2 cut(s) 130, 229
BseRI GAGGAG 1 cut(s) 565
BseXI GCAGC 4 cut(s) 111, 196, 590, 618
Bsh1236I CGCG 2 cut(s) 156, 158
BshFI GGCC 4 cut(s) 423, 566, 619, 678
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 3 cut(s) 324, 463, 503
BsnI GGCC 4 cut(s) 423, 566, 619, 678
Bso31I GGTCTC 1 cut(s) 503
BsoBI CYCGRG 1 cut(s) 377
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 5 cut(s) 138, 455, 490, 504, 578
BspANI GGCC 4 cut(s) 423, 566, 619, 678
BspCNI CTCAG 2 cut(s) 315, 571
BspFNI CGCG 2 cut(s) 156, 158
BspMAI CTGCAG 1 cut(s) 608
BspMI ACCTGC 1 cut(s) 129
BspQI GCTCTTC 2 cut(s) 116, 477
BspT104I TTCGAA 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 503
BsrI ACTGG 2 cut(s) 130, 229
BssECI CCNNGG 2 cut(s) 441, 493
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 2 cut(s) 116, 477
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 2 cut(s) 302, 558
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 3 cut(s) 180, 406, 516
BstFNI CGCG 2 cut(s) 156, 158
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 3 cut(s) 158, 489, 540
BstMAI GTCTC 3 cut(s) 324, 463, 503
BstMWI GCNNNNNNNGC 2 cut(s) 106, 388
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 2 cut(s) 242, 604
BstUI CGCG 2 cut(s) 156, 158
BstV1I GCAGC 4 cut(s) 111, 196, 590, 618
BstV2I GAAGAC 2 cut(s) 188, 455
BsuRI GGCC 4 cut(s) 423, 566, 619, 678
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 3 cut(s) 180, 406, 516
BtsIMutI CAGTG 2 cut(s) 192, 310
BveI ACCTGC 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 696
CfoI GCGC 3 cut(s) 158, 489, 540
Cfr13I GGNCC 3 cut(s) 37, 118, 618
CseI GACGC 1 cut(s) 598
CviAII CATG 8 cut(s) 34, 52, 201, 349, 430, 442, 599, 674
CviJI RGCY 9 cut(s) 109, 209, 361, 423, 566, 593, 603, 619, 678
CviKI_1 RGCY 9 cut(s) 109, 209, 361, 423, 566, 593, 603, 619, 678
DdeI CTNAG 2 cut(s) 302, 558
Eam1104I CTCTTC 2 cut(s) 116, 477
EarI CTCTTC 2 cut(s) 116, 477
Eco130I CCWWGG 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 37, 118
Eco88I CYCGRG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 8 cut(s) 37, 55, 204, 352, 433, 445, 602, 677
FatI CATG 8 cut(s) 33, 51, 200, 348, 429, 441, 598, 673
Fnu4HI GCNGC 6 cut(s) 125, 210, 490, 579, 604, 607
FokI GGATG 3 cut(s) 187, 413, 523
Fsp4HI GCNGC 6 cut(s) 125, 210, 490, 579, 604, 607
GlaI GCGC 3 cut(s) 157, 488, 539
GluI GCNGC 6 cut(s) 125, 210, 490, 579, 604, 607
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 4 cut(s) 423, 566, 619, 678
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 598
HhaI GCGC 3 cut(s) 158, 489, 540
Hin1II CATG 8 cut(s) 37, 55, 204, 352, 433, 445, 602, 677
Hin6I GCGC 3 cut(s) 156, 487, 538
HinP1I GCGC 3 cut(s) 156, 487, 538
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HinfI GANTC 2 cut(s) 48, 685
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 337, 493
Hpy166II GTNNAC 7 cut(s) 90, 118, 278, 299, 316, 366, 372
Hpy188I TCNGA 4 cut(s) 28, 47, 63, 528
Hpy188III TCNNGA 3 cut(s) 145, 560, 613
Hpy8I GTNNAC 7 cut(s) 90, 118, 278, 299, 316, 366, 372
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 3 cut(s) 184, 300, 625
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 4 cut(s) 69, 271, 355, 368
HpyCH4V TGCA 2 cut(s) 10, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 388
HpyF3I CTNAG 2 cut(s) 302, 558
HpySE526I ACGT 4 cut(s) 69, 271, 355, 368
Hsp92II CATG 8 cut(s) 37, 55, 204, 352, 433, 445, 602, 677
HspAI GCGC 3 cut(s) 156, 487, 538
LguI GCTCTTC 2 cut(s) 116, 477
LmnI GCTCC 1 cut(s) 132
Lsp1109I GCAGC 4 cut(s) 111, 196, 590, 618
LweI GCATC 3 cut(s) 391, 391, 532
MaeII ACGT 4 cut(s) 69, 271, 355, 368
MaeIII GTNAC 1 cut(s) 514
MboII GAAGA 6 cut(s) 103, 193, 460, 491, 494, 651
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 21
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 2 cut(s) 25, 213
MnlI CCTC 5 cut(s) 165, 331, 543, 556, 609
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
MvnI CGCG 2 cut(s) 156, 158
MwoI GCNNNNNNNGC 2 cut(s) 106, 388
NcoI CCATGG 1 cut(s) 441
NlaIII CATG 8 cut(s) 37, 55, 204, 352, 433, 445, 602, 677
NspV TTCGAA 1 cut(s) 683
OliI CACNNNNGTG 1 cut(s) 390
PaeR7I CTCGAG 1 cut(s) 377
PciSI GCTCTTC 2 cut(s) 116, 477
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 685
PkrI GCNGC 6 cut(s) 126, 211, 491, 580, 605, 608
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspPI GGNCC 3 cut(s) 37, 118, 618
PspXI VCTCGAGB 1 cut(s) 377
PstI CTGCAG 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 390
SapI GCTCTTC 2 cut(s) 116, 477
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 6 cut(s) 125, 210, 490, 579, 604, 607
Sau96I GGNCC 3 cut(s) 37, 118, 618
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 3 cut(s) 391, 391, 532
SfcI CTRYAG 2 cut(s) 242, 604
Sfr274I CTCGAG 1 cut(s) 377
SfuI TTCGAA 1 cut(s) 683
SinI GGWCC 2 cut(s) 37, 118
SlaI CTCGAG 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 1 cut(s) 21
SsiI CCGC 5 cut(s) 138, 455, 490, 504, 578
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 4 cut(s) 72, 274, 358, 371
TaqI TCGA 4 cut(s) 144, 378, 658, 683
TasI AATT 1 cut(s) 21
TauI GCSGC 2 cut(s) 492, 581
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 2 cut(s) 192, 310
TseI GCWGC 4 cut(s) 124, 209, 603, 606
TspDTI ATGAA 2 cut(s) 151, 194
TspGWI ACGGA 1 cut(s) 523
TspRI CASTG 2 cut(s) 192, 310
VpaK11BI GGWCC 2 cut(s) 37, 118
XhoI CTCGAG 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.