Rh3AG253000
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000751
Physical Location & Seq
Reverse (-)
27412112 .. 27424980
12869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG253000.1

Sequence Viewer

Length: 771 bp
ATGAACATATCTCGCTTCGGAGTCGAAGGAGATCGGCAAGAAACATCTTCACAAAAAATGTTTGAGTGGACGTTGGAGCACCACAAGAAGTGTGTTGAGACCTTCATCTTGTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGTGGAGCTGTTGAGCCTGGCAGGATGTTGTTGTAGAAGTTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTGCTACAAAAAAGCTCTGAAGTATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATATGTGGCACCTCAAAAGATGTCATCGTCATGGACGTTGGAGCATCACCGGCGGGTTGTGGAGGCGGTGATACAGCTCGGTGGGCTTAGCAGTAGCAAGACTACCCCAAAGGCTGTGCTGAAGCTGATGGATAAGGAGGACCGCTGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGACTAATTGCTTTTGGATTGGCTGGTGGTGAAGAAGAAAGAGAGCTAGCGCATAGGGAGCTCCGGTACCTTGTTTTTACTGGATTGCCCCAACAACGAAATAACATTCTATACACAAAGGAAATGGCTTGCACCTCATCTTCTGAAAGGAGCTTGAGTTCTATGGAGAGCGAGACTCGAAAGGACATGGACATGGATATTAGGGAATGGCTTGCACCTCATCTTCTTAAATTTCCAGAATTCTTCCAGTCTTCATCTAGTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

256

Amino Acids

29.16

Weight (kDa)

7.17

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 570
AccB1I GGYRCC 2 cut(s) 295, 570
AccB7I CCANNNNNTGG 1 cut(s) 472
AciI CCGC 4 cut(s) 117, 340, 353, 430
AcsI RAATTY 2 cut(s) 734, 743
AcuI CTGAAG 2 cut(s) 267, 428
AfaI GTAC 2 cut(s) 141, 572
AfiI CCNNNNNNNGG 4 cut(s) 157, 225, 292, 472
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 171
AloI GAACNNNNNNTCC 2 cut(s) 646, 678
AluBI AGCT 7 cut(s) 163, 243, 364, 412, 550, 565, 657
AluI AGCT 7 cut(s) 163, 243, 364, 412, 550, 565, 657
Alw21I GWGCWC 2 cut(s) 81, 567
Alw26I GTCTC 2 cut(s) 92, 671
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 432
ApoI RAATTY 2 cut(s) 734, 743
Asp718I GGTACC 1 cut(s) 570
AspLEI GCGC 2 cut(s) 463, 556
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 6 cut(s) 131, 265, 326, 367, 436, 545
AsuNHI GCTAGC 1 cut(s) 550
AvaII GGWCC 1 cut(s) 427
BanI GGYRCC 2 cut(s) 295, 570
BanII GRGCYC 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 2 cut(s) 81, 567
BbvI GCAGC 1 cut(s) 419
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 92, 671
BfaI CTAG 2 cut(s) 551, 762
BfmI CTRYAG 1 cut(s) 767
BisI GCNGC 1 cut(s) 433
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 297, 572
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 340
BmtI GCTAGC 1 cut(s) 554
BpiI GAAGAC 1 cut(s) 747
BplI GAGNNNNNCTC 2 cut(s) 664, 696
Bpu1102I GCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 679
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 436
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 4 cut(s) 554, 584, 646, 676
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 225, 292, 472
Bse118I RCCGGY 1 cut(s) 336
Bse1I ACTGG 2 cut(s) 589, 751
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 436
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 4 cut(s) 157, 225, 292, 472
BseNI ACTGG 2 cut(s) 589, 751
BseXI GCAGC 1 cut(s) 419
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 2 cut(s) 295, 570
BsiHKAI GWGCWC 2 cut(s) 81, 567
BsiSI CCGG 2 cut(s) 337, 568
BslI CCNNNNNNNGG 4 cut(s) 157, 225, 292, 472
BsmAI GTCTC 2 cut(s) 92, 671
BsnI GGCC 1 cut(s) 441
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 81, 567
Bsp143I GATC 1 cut(s) 31
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 4 cut(s) 117, 340, 353, 430
BspANI GGCC 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 297, 572
BspOI GCTAGC 1 cut(s) 554
BspT107I GGYRCC 2 cut(s) 295, 570
BspTNI GGTCTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 336
BsrI ACTGG 2 cut(s) 589, 751
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 552, 634, 717
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 185
BstHHI GCGC 2 cut(s) 463, 556
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 2 cut(s) 92, 671
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 5 cut(s) 229, 337, 370, 438, 562
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 767
BstV1I GCAGC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 747
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 1 cut(s) 185
Cac8I GCNNGC 3 cut(s) 552, 634, 717
CfoI GCGC 2 cut(s) 463, 556
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 2 cut(s) 140, 571
CviAII CATG 3 cut(s) 318, 691, 697
CviQI GTAC 2 cut(s) 140, 571
DdeI CTNAG 1 cut(s) 374
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 436
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 567
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 2 cut(s) 267, 428
EcoICRI GAGCTC 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 743
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 3 cut(s) 321, 694, 700
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 3 cut(s) 317, 690, 696
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 2 cut(s) 551, 762
GlaI GCGC 2 cut(s) 462, 555
GluI GCNGC 1 cut(s) 433
HaeIII GGCC 1 cut(s) 441
HapII CCGG 2 cut(s) 337, 568
HhaI GCGC 2 cut(s) 463, 556
Hin1II CATG 3 cut(s) 321, 694, 700
Hin6I GCGC 2 cut(s) 461, 554
HinP1I GCGC 2 cut(s) 461, 554
HinfI GANTC 2 cut(s) 21, 679
HpaII CCGG 2 cut(s) 337, 568
HphI GGTGA 6 cut(s) 131, 265, 326, 367, 436, 545
Hpy166II GTNNAC 2 cut(s) 69, 142
Hpy188I TCNGA 3 cut(s) 20, 247, 649
Hpy188III TCNNGA 1 cut(s) 740
Hpy8I GTNNAC 2 cut(s) 69, 142
HpyAV CCTTC 3 cut(s) 20, 112, 487
HpyCH4IV ACGT 2 cut(s) 71, 323
HpyCH4V TGCA 3 cut(s) 490, 636, 719
HpyF10VI GCNNNNNNNGC 5 cut(s) 229, 337, 370, 438, 562
HpyF3I CTNAG 1 cut(s) 374
HpySE526I ACGT 2 cut(s) 71, 323
Hsp92II CATG 3 cut(s) 321, 694, 700
HspAI GCGC 2 cut(s) 461, 554
KpnI GGTACC 1 cut(s) 574
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 6 cut(s) 76, 160, 328, 562, 570, 654
LpnPI CCDG 9 cut(s) 158, 162, 185, 350, 513, 570, 581, 753, 764
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 551, 762
MaeII ACGT 2 cut(s) 71, 323
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 7 cut(s) 39, 548, 551, 636, 719, 739, 747
MhlI GDGCHC 2 cut(s) 81, 567
MluCI AATT 3 cut(s) 510, 734, 743
MlyI GAGTC 2 cut(s) 30, 673
MmeI TCCRAC 3 cut(s) 54, 115, 306
MnlI CCTC 7 cut(s) 271, 309, 343, 418, 452, 649, 732
MseI TTAA 1 cut(s) 732
MslI CAYNNNNRTG 3 cut(s) 316, 452, 695
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 2 cut(s) 337, 568
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 5 cut(s) 229, 337, 370, 438, 562
NdeII GATC 1 cut(s) 31
NheI GCTAGC 1 cut(s) 550
NlaIII CATG 3 cut(s) 321, 694, 700
NlaIV GGNNCC 2 cut(s) 297, 572
NmuCI GTSAC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 472
PkrI GCNGC 1 cut(s) 434
PleI GAGTC 2 cut(s) 29, 673
PpsI GAGTC 2 cut(s) 29, 673
Psp124BI GAGCTC 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 297, 572
PspPI GGNCC 1 cut(s) 427
RsaI GTAC 2 cut(s) 141, 572
RsaNI GTAC 2 cut(s) 140, 571
RseI CAYNNNNRTG 3 cut(s) 316, 452, 695
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 2 cut(s) 30, 673
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 81, 567
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 767
SgrAI CRCCGGYG 1 cut(s) 336
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 3 cut(s) 316, 452, 695
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
Sse9I AATT 3 cut(s) 510, 734, 743
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 4 cut(s) 117, 340, 353, 430
SspMI CTAG 2 cut(s) 551, 762
SstI GAGCTC 1 cut(s) 567
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 436
TaiI ACGT 2 cut(s) 74, 326
TaqI TCGA 2 cut(s) 24, 682
TasI AATT 3 cut(s) 510, 734, 743
TatI WGTACW 1 cut(s) 139
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 17, 94, 747
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 2 cut(s) 734, 743
XspI CTAG 2 cut(s) 551, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.