Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

21402224 .. 21402994

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAATCCAAATGCCACGTGGAGTAGGTATCCAGTTAGGATTGAGACATTCAATCACTATATAAGGAACTCAGTCCCAAACAAAAAGAAATTAGCAACCTCATTTGCTGTCAAGATGAACATATCTCGCTTCCGGGTCGAAGGAGATCGGCAAGAAACATCTTCGCCAAAAATGTTTGAGTGGATGTTGGAGCACCACAAGAAGTGTGTTGACACCTTCATTATGTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGTGGAGCTGTTGAGCCTGGCAGGATGTTGTTGTAGGAGCTTTTATCTTGACTTCCACATTTCCTTGCTTGGGGTGCTACAAAAAAGCTCCGAAGTATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTCATGGACGTTGGAGCATCACCGGCGGGTTGTGGAGGCGGTGATACAGCTCGGTGGGCTTAGCAATAGCAAGACTACCCCAAAGGCTGTGCTGAAGCTGATGGATGAGGAGGACCGCTGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTATATCATTTGCAGAAGGAAACTCAACGACTAATTGCTTTTGGATTGGCTGGTGGTGAAGAAGAAAGAGAGCTAGCGCTTAGGGAGCTCCGGTACCTTGTTTTAACTGGATTGCCCCAACGGCGGAATAGCGTTCTATACACAAAGTTAAAAAATATCCTCTACTCCGACAACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

257

Amino Acids

29.3

Weight (kDa)

9.38

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	684
AccB1I	GGYRCC	2 cut(s)	409, 684
AccB7I	CCANNNNNTGG	1 cut(s)	586
AciI	CCGC	5 cut(s)	231, 454, 467, 544, 715
AcuI	CTGAAG	1 cut(s)	542
AcvI	CACGTG	1 cut(s)	18
AfaI	GTAC	2 cut(s)	255, 686
AfeI	AGCGCT	1 cut(s)	669
AfiI	CCNNNNNNNGG	5 cut(s)	271, 339, 406, 586, 714
AgsI	TTSAA	2 cut(s)	52, 395
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	7 cut(s)	277, 309, 357, 478, 526, 664, 679
AluI	AGCT	7 cut(s)	277, 309, 357, 478, 526, 664, 679
Alw21I	GWGCWC	2 cut(s)	195, 681
Alw26I	GTCTC	1 cut(s)	38
Aor51HI	AGCGCT	1 cut(s)	669
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	1 cut(s)	546
Asp718I	GGTACC	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	577, 670
AspS9I	GGNCC	1 cut(s)	541
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	6 cut(s)	245, 379, 440, 481, 550, 659
AsuNHI	GCTAGC	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	541
BanI	GGYRCC	2 cut(s)	409, 684
BanII	GRGCYC	1 cut(s)	681
BbrPI	CACGTG	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	195, 681
BbvI	GCAGC	1 cut(s)	533
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	1 cut(s)	728
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	665, 769
BfoI	RGCGCY	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	39
BglI	GCCNNNNNGGC	1 cut(s)	712
BisI	GCNGC	1 cut(s)	547
BlpI	GCTNAGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	548
Bme1390I	CCNGG	2 cut(s)	134, 287
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	2 cut(s)	411, 686
BmrFI	CCNGG	2 cut(s)	134, 287
BmsI	GCATC	1 cut(s)	454
BmtI	GCTAGC	1 cut(s)	668
Bpu10I	CCTNAGC	1 cut(s)	671
Bpu1102I	GCTNAGC	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	134
BsaAI	YACGTR	2 cut(s)	18, 406
BsaJI	CCNNGG	1 cut(s)	550
BsaWI	WCCGGW	1 cut(s)	681
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	5 cut(s)	271, 339, 406, 586, 714
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	2 cut(s)	32, 703
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	3 cut(s)	189, 299, 538
BseLI	CCNNNNNNNGG	5 cut(s)	271, 339, 406, 586, 714
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	32, 703
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	533
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	2 cut(s)	409, 684
BsiHKAI	GWGCWC	2 cut(s)	195, 681
BsiSI	CCGG	3 cut(s)	133, 451, 682
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	5 cut(s)	271, 339, 406, 586, 714
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	195, 681
Bsp143I	GATC	1 cut(s)	145
Bsp1720I	GCTNAGC	1 cut(s)	488
BspACI	CCGC	5 cut(s)	231, 454, 467, 544, 715
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	411, 686
BspOI	GCTAGC	1 cut(s)	668
BspT107I	GGYRCC	2 cut(s)	409, 684
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	32, 703
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	287
BstBAI	YACGTR	2 cut(s)	18, 406
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	3 cut(s)	70, 488, 671
BstF5I	GGATG	3 cut(s)	189, 299, 538
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	2 cut(s)	577, 670
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	6 cut(s)	343, 451, 484, 552, 676, 712
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	132, 285
BstV1I	GCAGC	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	3 cut(s)	189, 299, 538
Cac8I	GCNNGC	1 cut(s)	666
CfoI	GCGC	2 cut(s)	577, 670
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	254, 685
CviAII	CATG	1 cut(s)	432
CviQI	GTAC	2 cut(s)	254, 685
DdeI	CTNAG	3 cut(s)	70, 488, 671
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	730
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	550
Eco147I	AGGCCT	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	541
Eco47III	AGCGCT	1 cut(s)	669
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	542
Eco72I	CACGTG	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	1 cut(s)	435
FaiI	YATR	8 cut(s)	60, 62, 122, 224, 403, 433, 595, 730
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	431
FauI	CCCGC	1 cut(s)	447
Fnu4HI	GCNGC	1 cut(s)	547
FokI	GGATG	3 cut(s)	196, 306, 545
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	1 cut(s)	547
FspBI	CTAG	2 cut(s)	665, 769
GlaI	GCGC	2 cut(s)	576, 669
GluI	GCNGC	1 cut(s)	547
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	3 cut(s)	133, 451, 682
HhaI	GCGC	2 cut(s)	577, 670
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	2 cut(s)	575, 668
HinP1I	GCGC	2 cut(s)	575, 668
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	133, 451, 682
HphI	GGTGA	6 cut(s)	245, 379, 440, 481, 550, 659
Hpy166II	GTNNAC	2 cut(s)	211, 256
Hpy188I	TCNGA	2 cut(s)	361, 760
Hpy188III	TCNNGA	2 cut(s)	112, 317
Hpy8I	GTNNAC	2 cut(s)	211, 256
HpyAV	CCTTC	3 cut(s)	134, 226, 601
HpyCH4IV	ACGT	3 cut(s)	17, 405, 437
HpyCH4V	TGCA	1 cut(s)	604
HpyF10VI	GCNNNNNNNGC	6 cut(s)	343, 451, 484, 552, 676, 712
HpyF3I	CTNAG	3 cut(s)	70, 488, 671
HpySE526I	ACGT	3 cut(s)	17, 405, 437
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	2 cut(s)	575, 668
KpnI	GGTACC	1 cut(s)	688
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	7 cut(s)	190, 274, 306, 362, 442, 676, 684
LpnPI	CCDG	9 cut(s)	45, 146, 272, 276, 299, 464, 627, 684, 695
Lsp1109I	GCAGC	1 cut(s)	533
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	665, 769
MaeII	ACGT	3 cut(s)	17, 405, 437
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	153, 662, 665
MhlI	GDGCHC	2 cut(s)	195, 681
MluCI	AATT	2 cut(s)	89, 624
MmeI	TCCRAC	3 cut(s)	168, 229, 420
MnlI	CCTC	8 cut(s)	109, 385, 423, 457, 529, 532, 566, 761
MseI	TTAA	2 cut(s)	695, 740
MslI	CAYNNNNRTG	2 cut(s)	430, 566
MspA1I	CMGCKG	1 cut(s)	546
MspI	CCGG	3 cut(s)	133, 451, 682
MspR9I	CCNGG	2 cut(s)	134, 287
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	6 cut(s)	343, 451, 484, 552, 676, 712
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	1 cut(s)	145
NheI	GCTAGC	1 cut(s)	664
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	411, 686
NmuCI	GTSAC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	548
PmaCI	CACGTG	1 cut(s)	18
PmlI	CACGTG	1 cut(s)	18
Ppu21I	YACGTR	2 cut(s)	18, 406
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	285
PspCI	CACGTG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	411, 686
PspPI	GGNCC	1 cut(s)	541
RsaI	GTAC	2 cut(s)	255, 686
RsaNI	GTAC	2 cut(s)	254, 685
RseI	CAYNNNNRTG	2 cut(s)	430, 566
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	2 cut(s)	695, 740
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	134, 287
SduI	GDGCHC	2 cut(s)	195, 681
SfaNI	GCATC	1 cut(s)	454
SgrAI	CRCCGGYG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	2 cut(s)	430, 566
Sse9I	AATT	2 cut(s)	89, 624
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	5 cut(s)	231, 454, 467, 544, 715
SspMI	CTAG	2 cut(s)	665, 769
SstI	GAGCTC	1 cut(s)	681
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	132, 285
StyI	CCWWGG	1 cut(s)	550
TaiI	ACGT	3 cut(s)	20, 408, 440
TaqI	TCGA	1 cut(s)	138
TasI	AATT	2 cut(s)	89, 624
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	695, 740
Tru9I	TTAA	2 cut(s)	695, 740
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	17, 131, 208
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XspI	CTAG	2 cut(s)	665, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.