Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004790.1

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Reverse (-)

16728 .. 17417

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004790.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgaacatatctcgcttcagtgtcgaaggagatcggcaagaaacatcttcaccaaaaatgtttgagtggacgttggagcaccacaagaagtgtgttgacaccttcatcttgttgggcggtgataaagaaaaagttggagtacacaatgccctaaaggtggagttgttgagcctggcaggatgttgttgtagaagtttttaccttgacttccacatttccttgcttggggtgctacaaaaaagctccgacgtattattttcctctaacaaagtcacccttgaaagcctatacgtggcacctcaaaagatgtcatcgtcatggacgttggagcatcaccggcgggttgtggaggcggtgatacagctcggtgggctgagcagtagcaagactaccccaaaggctgtgctgaagctgatggatgaggaggaccgttgtcaaggcctcaccacaaagatgatagcgcaccaccttttggggatgtatcatttgcagaaggaaactcaacgactaattacttttggattggctggtggtgaagaagaaagagagctagcacgtagggagctccggtaccttgtttttactggattgctccaacaacggaatagaattctatacacaaagttaaaagatcctctactcagacaacacctagggctcctcaaacaagttaatattgttgacttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

229

Amino Acids

26.12

Weight (kDa)

8.93

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	570
AccB1I	GGYRCC	2 cut(s)	295, 570
AccB7I	CCANNNNNTGG	1 cut(s)	472
AciI	CCGC	3 cut(s)	117, 340, 353
AclWI	GGATC	1 cut(s)	626
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	141, 572
AfiI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	5 cut(s)	243, 364, 412, 550, 565
AluI	AGCT	5 cut(s)	243, 364, 412, 550, 565
Alw21I	GWGCWC	2 cut(s)	81, 567
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	1 cut(s)	439
ApoI	RAATTY	1 cut(s)	609
Asp718I	GGTACC	1 cut(s)	570
AspA2I	CCTAGG	1 cut(s)	652
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	7 cut(s)	42, 131, 265, 326, 367, 436, 545
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	427
AvrII	CCTAGG	1 cut(s)	652
BanI	GGYRCC	2 cut(s)	295, 570
BanII	GRGCYC	2 cut(s)	567, 660
Bbv12I	GWGCWC	2 cut(s)	81, 567
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	173
BfaI	CTAG	2 cut(s)	551, 653
BlnI	CCTAGG	1 cut(s)	652
BlpI	GCTNAGC	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	3 cut(s)	297, 572, 659
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	340
BmtI	GCTAGC	1 cut(s)	554
BoxI	GACNNNNGTC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaAI	YACGTR	2 cut(s)	292, 557
BsaJI	CCNNGG	1 cut(s)	652
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	3 cut(s)	185, 424, 483
BseLI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
BseMII	CTCAG	2 cut(s)	365, 655
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	2 cut(s)	437, 650
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	2 cut(s)	295, 570
BsiHKAI	GWGCWC	2 cut(s)	81, 567
BsiSI	CCGG	2 cut(s)	337, 568
BslI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
BsnI	GGCC	1 cut(s)	441
Bsp1286I	GDGCHC	3 cut(s)	81, 567, 660
Bsp143I	GATC	2 cut(s)	31, 631
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	3 cut(s)	117, 340, 353
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	2 cut(s)	366, 654
BspLI	GGNNCC	3 cut(s)	297, 572, 659
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	1 cut(s)	626
BspT107I	GGYRCC	2 cut(s)	295, 570
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	2 cut(s)	31, 631
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	431
BstBAI	YACGTR	2 cut(s)	292, 557
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	374, 641
BstF5I	GGATG	3 cut(s)	185, 424, 483
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	2 cut(s)	34, 634
BstMBI	GATC	2 cut(s)	31, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 337, 370
BstNI	CCWGG	1 cut(s)	173
BstPAI	GACNNNNGTC	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	185, 424, 483
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	140, 571
CviAII	CATG	1 cut(s)	318
CviQI	GTAC	2 cut(s)	140, 571
DdeI	CTNAG	2 cut(s)	374, 641
DpnI	GATC	2 cut(s)	33, 633
DpnII	GATC	2 cut(s)	31, 631
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	652
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	2 cut(s)	567, 660
Eco47I	GGWCC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	567, 660
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	1 cut(s)	321
FaiI	YATR	4 cut(s)	8, 289, 319, 616
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	1 cut(s)	317
FauI	CCCGC	1 cut(s)	333
FokI	GGATG	3 cut(s)	192, 431, 490
FriOI	GRGCYC	2 cut(s)	567, 660
FspBI	CTAG	2 cut(s)	551, 653
GlaI	GCGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	2 cut(s)	337, 568
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HincII	GTYRAC	2 cut(s)	97, 682
HindII	GTYRAC	2 cut(s)	97, 682
HpaII	CCGG	2 cut(s)	337, 568
HphI	GGTGA	7 cut(s)	42, 131, 265, 326, 367, 436, 545
Hpy166II	GTNNAC	4 cut(s)	69, 97, 142, 682
Hpy188I	TCNGA	2 cut(s)	247, 644
Hpy8I	GTNNAC	4 cut(s)	69, 97, 142, 682
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	20, 112, 487
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	5 cut(s)	71, 249, 291, 323, 556
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 337, 370
HpyF3I	CTNAG	2 cut(s)	374, 641
HpySE526I	ACGT	5 cut(s)	71, 249, 291, 323, 556
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	1 cut(s)	461
KpnI	GGTACC	1 cut(s)	574
Kzo9I	GATC	2 cut(s)	31, 631
LmnI	GCTCC	7 cut(s)	76, 248, 328, 562, 570, 597, 663
LpnPI	CCDG	7 cut(s)	158, 162, 185, 350, 513, 570, 581
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	551, 653
MaeII	ACGT	5 cut(s)	71, 249, 291, 323, 556
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	33, 633
MboI	GATC	2 cut(s)	31, 631
MboII	GAAGA	3 cut(s)	39, 548, 551
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	3 cut(s)	81, 567, 660
MluCI	AATT	2 cut(s)	510, 609
MmeI	TCCRAC	5 cut(s)	54, 115, 270, 306, 619
MnlI	CCTC	8 cut(s)	271, 309, 343, 415, 418, 452, 645, 671
MseI	TTAA	2 cut(s)	626, 672
MslI	CAYNNNNRTG	2 cut(s)	316, 452
MspI	CCGG	2 cut(s)	337, 568
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	229, 337, 370
NdeII	GATC	2 cut(s)	31, 631
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	3 cut(s)	297, 572, 659
NmuCI	GTSAC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	472
Ppu21I	YACGTR	2 cut(s)	292, 557
PshAI	GACNNNNGTC	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	297, 572, 659
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	2 cut(s)	141, 572
RsaNI	GTAC	2 cut(s)	140, 571
RseI	CAYNNNNRTG	2 cut(s)	316, 452
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	626, 672
Sau3AI	GATC	2 cut(s)	31, 631
Sau96I	GGNCC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	3 cut(s)	81, 567, 660
SfaNI	GCATC	1 cut(s)	340
SgrAI	CRCCGGYG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	2 cut(s)	316, 452
Sse9I	AATT	2 cut(s)	510, 609
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	3 cut(s)	117, 340, 353
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	2 cut(s)	551, 653
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	5 cut(s)	74, 252, 294, 326, 559
TaqI	TCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	510, 609
TatI	WGTACW	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	626, 672
Tru9I	TTAA	2 cut(s)	626, 672
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 94
TspGWI	ACGGA	1 cut(s)	616
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	609
XmaJI	CCTAGG	1 cut(s)	652
XspI	CTAG	2 cut(s)	551, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.