Rh7BG386400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000751
Physical Location & Seq
Reverse (-)
41860631 .. 41861383
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG386400.1

Sequence Viewer

Length: 570 bp
ATGAACATGTTTCGCTTTGTGGTTGAAGGAGATCACCGAGGAACAACTACACCAAGGATGTTCGAGTGGACGTTGGAGCACCACAAGCAGTGCGTGGATACTTTTATCCTCTTGGGTGGTGATAAAGAAAAAGTTGGAGTACACAATGCCTTAAAGGCGGAGCTGTTGAGCCTGGCGGGGTGTTGTTGTAGAAGCTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTACTACAGAAAAGGTCTGAAGCATTATTTTCCAATAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTAAAAAGATGTCATCGTCACAGACGCTGGAGCATCACCGGCGGGTCATGGAGGCGGTGATACAACTCGGTAGGCTTAGCAATGGCAAGACTACCCCAAAGTCTGTGCTGAAGTTGATAGATGAGGAAGACCGCCACCAAGGCCTAACCGCAAAGATGATAGCGCACCACCTTGTAGGGTTGTATCATTTGCAGAAGGAAACTCAACGGCTAATGGCTTTTGGAATGGCTGGTGGTGAAGAAGAAATAGAGCTGTGGCTTAGGGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.56

Weight (kDa)

7.78

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AciI CCGC 6 cut(s) 158, 176, 340, 353, 430, 447
AcuI CTGAAG 2 cut(s) 267, 428
AfaI GTAC 2 cut(s) 141, 231
AfiI CCNNNNNNNGG 2 cut(s) 225, 292
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 2 cut(s) 26, 281
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 4 cut(s) 163, 195, 550, 565
AluI AGCT 4 cut(s) 163, 195, 550, 565
Alw21I GWGCWC 2 cut(s) 81, 567
AlwNI CAGNNNCTG 1 cut(s) 325
AoxI GGCC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 463
AsuHPI GGTGA 6 cut(s) 26, 131, 265, 326, 367, 545
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 2 cut(s) 81, 567
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 91
BfaI CTAG 1 cut(s) 568
BfmI CTRYAG 1 cut(s) 233
BfuI GTATCC 1 cut(s) 91
BglI GCCNNNNNGGC 2 cut(s) 155, 438
BlpI GCTNAGC 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 374
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 37, 53, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 292
Bse118I RCCGGY 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 3 cut(s) 37, 53, 436
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 225, 292
BseMI GCAATG 1 cut(s) 385
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 81, 567
BsiSI CCGG 1 cut(s) 337
BslI CCNNNNNNNGG 2 cut(s) 225, 292
BsnI GGCC 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 81, 567
Bsp143I GATC 1 cut(s) 31
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 6 cut(s) 158, 176, 340, 353, 430, 447
BspANI GGCC 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 37, 53, 436
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 2 cut(s) 53, 436
Bst2UI CCWGG 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 374, 557
BstF5I GGATG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 5 cut(s) 85, 155, 337, 438, 562
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 432
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 325
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 336
CseI GACGC 1 cut(s) 331
Csp6I GTAC 2 cut(s) 140, 230
CviAII CATG 2 cut(s) 7, 346
CviQI GTAC 2 cut(s) 140, 230
DdeI CTNAG 2 cut(s) 374, 557
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 53, 436
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 567
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 2 cut(s) 267, 428
EcoICRI GAGCTC 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 53, 436
EcoT38I GRGCYC 1 cut(s) 567
ErhI CCWWGG 2 cut(s) 53, 436
FaeI CATG 2 cut(s) 10, 349
FaiI YATR 3 cut(s) 8, 289, 347
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 2 cut(s) 6, 345
FauI CCCGC 2 cut(s) 169, 333
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 567
FspBI CTAG 1 cut(s) 568
GlaI GCGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 337
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 463
Hin1II CATG 2 cut(s) 10, 349
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HindIII AAGCTT 1 cut(s) 193
HpaII CCGG 1 cut(s) 337
HphI GGTGA 6 cut(s) 26, 131, 265, 326, 367, 545
Hpy166II GTNNAC 2 cut(s) 69, 142
Hpy188I TCNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 69, 142
HpyAV CCTTC 2 cut(s) 20, 487
HpyCH4IV ACGT 2 cut(s) 71, 291
HpyCH4V TGCA 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 155, 337, 438, 562
HpyF3I CTNAG 2 cut(s) 374, 557
HpySE526I ACGT 2 cut(s) 71, 291
Hsp92II CATG 2 cut(s) 10, 349
HspAI GCGC 1 cut(s) 461
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 4 cut(s) 76, 160, 328, 562
LpnPI CCDG 5 cut(s) 158, 185, 311, 350, 513
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 568
MaeII ACGT 2 cut(s) 71, 291
MaeIII GTNAC 2 cut(s) 271, 315
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 3 cut(s) 437, 548, 551
MhlI GDGCHC 2 cut(s) 81, 567
MmeI TCCRAC 2 cut(s) 54, 115
MnlI CCTC 4 cut(s) 32, 119, 343, 415
MseI TTAA 1 cut(s) 152
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 5 cut(s) 85, 155, 337, 438, 562
NdeII GATC 1 cut(s) 31
NlaIII CATG 2 cut(s) 10, 349
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 2 cut(s) 271, 315
NspI RCATGY 1 cut(s) 10
PceI AGGCCT 1 cut(s) 441
PciI ACATGT 1 cut(s) 6
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 325
RsaI GTAC 2 cut(s) 141, 231
RsaNI GTAC 2 cut(s) 140, 230
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 81, 567
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 233
SgrAI CRCCGGYG 1 cut(s) 336
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 6 cut(s) 158, 176, 340, 353, 430, 447
SspMI CTAG 1 cut(s) 568
SstI GAGCTC 1 cut(s) 567
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 2 cut(s) 53, 436
TaiI ACGT 2 cut(s) 74, 294
TaqI TCGA 1 cut(s) 63
TatI WGTACW 1 cut(s) 139
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 271, 315
Tsp45I GTSAC 2 cut(s) 271, 315
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 95
XceI RCATGY 1 cut(s) 10
XspI CTAG 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.