Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Reverse (-)

8348161 .. 8349356

Gene Structure 1196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAACATGTCTCGTTTAGGGGTCGAAGGAGATCGGCGAGCAACAACTTCACCAAGAACGTTCGAGTGGACGTTGGAGCATCACAAGAAGTGTGTTGACACCTTCATCTTTCTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGCGGAGCTGTTGAGCCTGACAGGGTGTTGTTGTAGAATCTCTTACCTTGACTTCCACATTTCCTTTCTTGGGCTACTACAGAAAAGCTCCGAAGCATTATTTTCCTCCAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTCATGGACACTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAGCTCGGTGGGCTTGGCAGTAGCAAGACTACCCCAAAGGCCGTGCTGAAGCTGATGGATGAGGAGGACCGCCGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGGGTAATTGCTTTTGGATTGGCTGGTGGTGAAGAAGAAAGAGAGCTGGCGCTTTGGGAGCTCCGATACCTTGTTTTTAGAGAATTTCCCCAACTACGGAATATCTTTCTATACACAAATGTAAAAGATCCTCTTCTCCGACAACACCTTGGGCTCCTCAAACAAGTTAATATGTCACACCGGATAAGATTACAGATTATGAAGTCTGAGTGGGAAGTATCAAGAGCTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

246

Amino Acids

28.31

Weight (kDa)

9.16

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	472
AciI	CCGC	6 cut(s)	117, 158, 340, 353, 430, 433
AclI	AACGTT	1 cut(s)	59
AclWI	GGATC	1 cut(s)	626
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	5 cut(s)	157, 225, 292, 472, 600
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	281, 737
AluBI	AGCT	7 cut(s)	163, 243, 364, 412, 550, 565, 731
AluI	AGCT	7 cut(s)	163, 243, 364, 412, 550, 565, 731
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	2 cut(s)	399, 439
ApoI	RAATTY	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	463, 556
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	7 cut(s)	42, 131, 265, 326, 367, 436, 545
AvaII	GGWCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	567, 660
Bbv12I	GWGCWC	1 cut(s)	567
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	557
BglI	GCCNNNNNGGC	2 cut(s)	155, 438
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	297, 659
BmsI	GCATC	2 cut(s)	88, 340
BpmI	CTGGAG	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	436, 652
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	5 cut(s)	157, 225, 292, 472, 600
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	436, 652
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	5 cut(s)	157, 225, 292, 472, 600
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	2 cut(s)	437, 650
BshFI	GGCC	2 cut(s)	401, 441
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	2 cut(s)	337, 685
BslI	CCNNNNNNNGG	5 cut(s)	157, 225, 292, 472, 600
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	401, 441
Bsp1286I	GDGCHC	2 cut(s)	567, 660
Bsp143I	GATC	2 cut(s)	31, 631
BspACI	CCGC	6 cut(s)	117, 158, 340, 353, 430, 433
BspANI	GGCC	2 cut(s)	401, 441
BspCNI	CTCAG	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	297, 659
BspPI	GGATC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	436, 652
BssMI	GATC	2 cut(s)	31, 631
BssT1I	CCWWGG	2 cut(s)	436, 652
Bst6I	CTCTTC	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	39, 552
BstDEI	CTNAG	1 cut(s)	711
BstF5I	GGATG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	2 cut(s)	463, 556
BstKTI	GATC	2 cut(s)	34, 634
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	2 cut(s)	31, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 337, 370, 438, 562
BstNSI	RCATGY	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	401, 441
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	39, 552
CfoI	GCGC	2 cut(s)	463, 556
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	2 cut(s)	7, 318
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	711
DpnI	GATC	2 cut(s)	33, 633
DpnII	GATC	2 cut(s)	31, 631
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	436, 652
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	2 cut(s)	567, 660
Eco47I	GGWCC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	436, 652
EcoT38I	GRGCYC	2 cut(s)	567, 660
ErhI	CCWWGG	2 cut(s)	436, 652
FaeI	CATG	2 cut(s)	10, 321
FaiI	YATR	6 cut(s)	8, 289, 319, 616, 677, 704
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 621, 653
FatI	CATG	2 cut(s)	6, 317
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	2 cut(s)	567, 660
Fsp4HI	GCNGC	1 cut(s)	433
GlaI	GCGC	2 cut(s)	462, 555
GluI	GCNGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	401, 441
HapII	CCGG	2 cut(s)	337, 685
HhaI	GCGC	2 cut(s)	463, 556
Hin1II	CATG	2 cut(s)	10, 321
Hin6I	GCGC	2 cut(s)	461, 554
HinP1I	GCGC	2 cut(s)	461, 554
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	2 cut(s)	337, 685
HphI	GGTGA	7 cut(s)	42, 131, 265, 326, 367, 436, 545
Hpy166II	GTNNAC	3 cut(s)	69, 97, 142
Hpy188I	TCNGA	4 cut(s)	247, 569, 644, 712
Hpy188III	TCNNGA	1 cut(s)	726
Hpy8I	GTNNAC	3 cut(s)	69, 97, 142
HpyAV	CCTTC	3 cut(s)	20, 112, 487
HpyCH4IV	ACGT	3 cut(s)	59, 71, 291
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 337, 370, 438, 562
HpyF3I	CTNAG	1 cut(s)	711
HpySE526I	ACGT	3 cut(s)	59, 71, 291
Hsp92II	CATG	2 cut(s)	10, 321
HspAI	GCGC	2 cut(s)	461, 554
Kzo9I	GATC	2 cut(s)	31, 631
LmnI	GCTCC	7 cut(s)	76, 160, 248, 328, 562, 570, 663
LpnPI	CCDG	8 cut(s)	98, 162, 185, 311, 350, 513, 536, 698
LweI	GCATC	2 cut(s)	88, 340
MaeII	ACGT	3 cut(s)	59, 71, 291
MaeIII	GTNAC	2 cut(s)	271, 678
MalI	GATC	2 cut(s)	33, 633
MboI	GATC	2 cut(s)	31, 631
MboII	GAAGA	3 cut(s)	548, 551, 629
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	567, 660
MluCI	AATT	2 cut(s)	510, 587
MmeI	TCCRAC	4 cut(s)	54, 115, 288, 667
MnlI	CCTC	8 cut(s)	271, 309, 343, 415, 418, 452, 645, 671
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	2 cut(s)	316, 452
MspI	CCGG	2 cut(s)	337, 685
MwoI	GCNNNNNNNGC	5 cut(s)	155, 337, 370, 438, 562
NdeII	GATC	2 cut(s)	31, 631
NlaIII	CATG	2 cut(s)	10, 321
NlaIV	GGNNCC	2 cut(s)	297, 659
NmuCI	GTSAC	2 cut(s)	271, 678
NspI	RCATGY	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	441
PciI	ACATGT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	292
PscI	ACATGT	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	297, 659
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	2 cut(s)	316, 452
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	2 cut(s)	31, 631
Sau96I	GGNCC	1 cut(s)	427
SduI	GDGCHC	2 cut(s)	567, 660
SfaNI	GCATC	2 cut(s)	88, 340
SfcI	CTRYAG	1 cut(s)	233
SgrAI	CRCCGGYG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	2 cut(s)	316, 452
Sse9I	AATT	2 cut(s)	510, 587
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	6 cut(s)	117, 158, 340, 353, 430, 433
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	441
StyI	CCWWGG	2 cut(s)	436, 652
TaiI	ACGT	3 cut(s)	62, 74, 294
TaqI	TCGA	2 cut(s)	24, 63
TasI	AATT	2 cut(s)	510, 587
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	2 cut(s)	271, 678
Tsp45I	GTSAC	2 cut(s)	271, 678
TspDTI	ATGAA	3 cut(s)	17, 94, 719
TspGWI	ACGGA	1 cut(s)	616
TspRI	CASTG	1 cut(s)	330
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	587
XceI	RCATGY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.