Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Reverse (-)

7515527 .. 7516261

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG098700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTCGTTTAGGGGTCGAAGGAGATCGGCGAGCAACAACTTCACCAAGAACGTTCGAGTGGACGTTGGAGCATCACAAGAAGTGTGTTGACACCTTCATCTTTCTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGCGGAGCTGTTGAGCCTGACAGGGTGTTGTTGTAGAATCTCTTACCTTGACTTCCACATTTCCTTTCTTGGGCTACTACAGAAAAGCTCCGAAGCATTATTTTCCTCCAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTCATGGACACTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAGCTCGGTGGGCTTGGCAGTAGCAAGACTACCCCAAAGGCCGTGCTGAAGCTGATGGATGAGGAGGACCGCCGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGGGTAATTGCTTTTGGATTGGCTGGTGGTGAAGAAGAAAGAGAGCTGGCGCTTTGGGAGCTCCGATACCTTGTTTTTAGAGAATTTCCCCAACTACGGAATATCTTTCTATACACAAATGTAAAAGATCCTCTTCTCCGACAACACCTTGGGCTCCTCAAACAAGTTAATATGTCACACCGGATAAGATTACAGATTATGAAGTCTGAGTGGGAAGTATCAAGAGCTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

244

Amino Acids

28.06

Weight (kDa)

9.16

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	466
AciI	CCGC	6 cut(s)	111, 152, 334, 347, 424, 427
AclI	AACGTT	1 cut(s)	53
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	5 cut(s)	151, 219, 286, 466, 594
AgsI	TTSAA	2 cut(s)	275, 731
AluBI	AGCT	7 cut(s)	157, 237, 358, 406, 544, 559, 725
AluI	AGCT	7 cut(s)	157, 237, 358, 406, 544, 559, 725
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	2 cut(s)	393, 433
ApoI	RAATTY	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	457, 550
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	7 cut(s)	36, 125, 259, 320, 361, 430, 539
AvaII	GGWCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	561, 654
Bbv12I	GWGCWC	1 cut(s)	561
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	551
BglI	GCCNNNNNGGC	2 cut(s)	149, 432
BisI	GCNGC	1 cut(s)	427
BlsI	GCNGC	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	291, 653
BmsI	GCATC	2 cut(s)	82, 334
BpmI	CTGGAG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	430, 646
BsaWI	WCCGGW	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 219, 286, 466, 594
Bse118I	RCCGGY	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	430, 646
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	5 cut(s)	151, 219, 286, 466, 594
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	431, 644
BshFI	GGCC	2 cut(s)	395, 435
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	331, 679
BslI	CCNNNNNNNGG	5 cut(s)	151, 219, 286, 466, 594
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	395, 435
Bsp1286I	GDGCHC	2 cut(s)	561, 654
Bsp143I	GATC	2 cut(s)	25, 625
BspACI	CCGC	6 cut(s)	111, 152, 334, 347, 424, 427
BspANI	GGCC	2 cut(s)	395, 435
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	2 cut(s)	291, 653
BspPI	GGATC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	430, 646
BssMI	GATC	2 cut(s)	25, 625
BssT1I	CCWWGG	2 cut(s)	430, 646
Bst6I	CTCTTC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	33, 546
BstDEI	CTNAG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	2 cut(s)	457, 550
BstKTI	GATC	2 cut(s)	28, 628
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	25, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 331, 364, 432, 556
BstSFI	CTRYAG	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	395, 435
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	33, 546
CfoI	GCGC	2 cut(s)	457, 550
Cfr10I	RCCGGY	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	312
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	2 cut(s)	27, 627
DpnII	GATC	2 cut(s)	25, 625
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	2 cut(s)	430, 646
Eco147I	AGGCCT	1 cut(s)	435
Eco24I	GRGCYC	2 cut(s)	561, 654
Eco47I	GGWCC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	559
EcoT14I	CCWWGG	2 cut(s)	430, 646
EcoT38I	GRGCYC	2 cut(s)	561, 654
ErhI	CCWWGG	2 cut(s)	430, 646
FaeI	CATG	1 cut(s)	315
FaiI	YATR	5 cut(s)	283, 313, 610, 671, 698
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 615, 647
FatI	CATG	1 cut(s)	311
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	427
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	2 cut(s)	561, 654
Fsp4HI	GCNGC	1 cut(s)	427
GlaI	GCGC	2 cut(s)	456, 549
GluI	GCNGC	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	395, 435
HapII	CCGG	2 cut(s)	331, 679
HhaI	GCGC	2 cut(s)	457, 550
Hin1II	CATG	1 cut(s)	315
Hin6I	GCGC	2 cut(s)	455, 548
HinP1I	GCGC	2 cut(s)	455, 548
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	331, 679
HphI	GGTGA	7 cut(s)	36, 125, 259, 320, 361, 430, 539
Hpy166II	GTNNAC	3 cut(s)	63, 91, 136
Hpy188I	TCNGA	4 cut(s)	241, 563, 638, 706
Hpy188III	TCNNGA	1 cut(s)	720
Hpy8I	GTNNAC	3 cut(s)	63, 91, 136
HpyAV	CCTTC	3 cut(s)	14, 106, 481
HpyCH4IV	ACGT	3 cut(s)	53, 65, 285
HpyCH4V	TGCA	1 cut(s)	484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 331, 364, 432, 556
HpyF3I	CTNAG	1 cut(s)	705
HpySE526I	ACGT	3 cut(s)	53, 65, 285
Hsp92II	CATG	1 cut(s)	315
HspAI	GCGC	2 cut(s)	455, 548
Kzo9I	GATC	2 cut(s)	25, 625
LmnI	GCTCC	7 cut(s)	70, 154, 242, 322, 556, 564, 657
LpnPI	CCDG	8 cut(s)	92, 156, 179, 305, 344, 507, 530, 692
LweI	GCATC	2 cut(s)	82, 334
MaeII	ACGT	3 cut(s)	53, 65, 285
MaeIII	GTNAC	2 cut(s)	265, 672
MalI	GATC	2 cut(s)	27, 627
MboI	GATC	2 cut(s)	25, 625
MboII	GAAGA	3 cut(s)	542, 545, 623
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	561, 654
MluCI	AATT	2 cut(s)	504, 581
MmeI	TCCRAC	4 cut(s)	48, 109, 282, 661
MnlI	CCTC	8 cut(s)	265, 303, 337, 409, 412, 446, 639, 665
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	2 cut(s)	310, 446
MspI	CCGG	2 cut(s)	331, 679
MwoI	GCNNNNNNNGC	5 cut(s)	149, 331, 364, 432, 556
NdeII	GATC	2 cut(s)	25, 625
NlaIII	CATG	1 cut(s)	315
NlaIV	GGNNCC	2 cut(s)	291, 653
NmuCI	GTSAC	2 cut(s)	265, 672
PceI	AGGCCT	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	428
Ppu21I	YACGTR	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	561
Psp1406I	AACGTT	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	291, 653
PspPI	GGNCC	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	2 cut(s)	310, 446
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	1 cut(s)	427
Sau3AI	GATC	2 cut(s)	25, 625
Sau96I	GGNCC	1 cut(s)	421
SduI	GDGCHC	2 cut(s)	561, 654
SfaNI	GCATC	2 cut(s)	82, 334
SfcI	CTRYAG	1 cut(s)	227
SgrAI	CRCCGGYG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	310, 446
Sse9I	AATT	2 cut(s)	504, 581
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	6 cut(s)	111, 152, 334, 347, 424, 427
SstI	GAGCTC	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	435
StyI	CCWWGG	2 cut(s)	430, 646
TaiI	ACGT	3 cut(s)	56, 68, 288
TaqI	TCGA	2 cut(s)	18, 57
TasI	AATT	2 cut(s)	504, 581
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	265, 672
Tsp45I	GTSAC	2 cut(s)	265, 672
TspDTI	ATGAA	2 cut(s)	88, 713
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.