Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000058.1

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

21632 .. 23292

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000058.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgaacatatctcgcttcggggtcgaaggagatcggcaagaaacatcttcaccaaaaatgtttgagtggacgttggagcaccacaagaagtgtgttgacaccttcatcttgttgggcggtgataaagaaaaagttggagtacacaatgccctaaaggtggagttgctgagcctggcaggatgttgttgtagaagtttttaccttgatttccacatttccttgcttggggtgctacaaaaaagctccgacgtattattttcctctaacaaagtcacccttgaaagcctatacgtggcacctcaaaagatgtcatcgtcatggacgttggagcatcaccggcgggttgtggaggcggtgatacagctcggtgggctgagcagtagcaagactaccccaaaggctgtgctgaagctgatggatgaggaggaccgctgccaaggcctcaccacaaagatgatagcgcaccaccttttggggctgtatcatttgcagaaggaaactcaacgactaattacttttggattggctggtggtgaagaagaaagagagctagcgcgtagggagctccggatcctccttcaagccagaccaaactacagctcggacctcagatgctggacaacctattgccaaggagaaccaccggcgacgccatcagatttgaagaagagagttgaagaagaagctgccgtcccgacctcttctacaaagaatctatcagctgttgcacattttgtacacctactgacgaaaccgatttgcaacttccaggagaagaaagtagaggaggagaagaaaagaagaaaaggaaagaaaaaagggaggagaagaagagacaagtcagaccaagtggaaggaaggagaagaaaaaaaagggagaaaaagaaaagaaaagttgtctccactttctttatctccacttttccttgtctccatgttgctgcctcacttcccaagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

320

Amino Acids

36.52

Weight (kDa)

9.67

Isoelectric Point (pI)

61.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccII	CGCG	1 cut(s)	556
AccIII	TCCGGA	1 cut(s)	567
AciI	CCGC	4 cut(s)	117, 340, 353, 430
AclWI	GGATC	2 cut(s)	565, 578
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	650
AfaI	GTAC	2 cut(s)	141, 738
AfiI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
AgsI	TTSAA	4 cut(s)	281, 581, 664, 677
AjnI	CCWGG	2 cut(s)	171, 768
AluBI	AGCT	8 cut(s)	243, 364, 412, 550, 565, 600, 686, 722
AluI	AGCT	8 cut(s)	243, 364, 412, 550, 565, 600, 686, 722
Alw21I	GWGCWC	2 cut(s)	81, 567
Alw26I	GTCTC	3 cut(s)	828, 904, 935
AlwI	GGATC	2 cut(s)	565, 578
AlwNI	CAGNNNCTG	1 cut(s)	615
Aor13HI	TCCGGA	1 cut(s)	567
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	432, 686, 941
AspLEI	GCGC	2 cut(s)	463, 556
AspS9I	GGNCC	2 cut(s)	427, 604
AsuHPI	GGTGA	7 cut(s)	42, 131, 265, 326, 367, 436, 545
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	427, 604
BamHI	GGATCC	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	81, 567
BbvI	GCAGC	3 cut(s)	419, 673, 928
BccI	CCATC	2 cut(s)	409, 661
BceAI	ACGGC	1 cut(s)	674
BciT130I	CCWGG	2 cut(s)	173, 770
BcoDI	GTCTC	3 cut(s)	828, 904, 935
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	595
BisI	GCNGC	3 cut(s)	433, 687, 942
BlpI	GCTNAGC	2 cut(s)	167, 374
BlsI	GCNGC	3 cut(s)	434, 688, 943
Bme1390I	CCNGG	2 cut(s)	173, 770
Bme18I	GGWCC	2 cut(s)	427, 604
BmgT120I	GGNCC	2 cut(s)	427, 604
BmiI	GGNNCC	2 cut(s)	297, 572
BmrFI	CCNGG	2 cut(s)	173, 770
BmsI	GCATC	2 cut(s)	340, 602
BmtI	GCTAGC	1 cut(s)	554
Bpu1102I	GCTNAGC	2 cut(s)	167, 374
BsaAI	YACGTR	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	436, 631
BsaWI	WCCGGW	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
Bse118I	RCCGGY	2 cut(s)	336, 643
BseAI	TCCGGA	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	173, 770
BseDI	CCNNGG	2 cut(s)	436, 631
BseGI	GGATG	2 cut(s)	185, 424
BseLI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
BseMII	CTCAG	3 cut(s)	158, 365, 622
BseRI	GAGGAG	4 cut(s)	437, 800, 803, 838
BseXI	GCAGC	3 cut(s)	419, 673, 928
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	81, 567
BsiSI	CCGG	3 cut(s)	337, 568, 644
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	4 cut(s)	157, 225, 292, 472
BsmAI	GTCTC	3 cut(s)	828, 904, 935
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	441
Bsp1286I	GDGCHC	2 cut(s)	81, 567
Bsp13I	TCCGGA	1 cut(s)	567
Bsp1407I	TGTACA	1 cut(s)	736
Bsp143I	GATC	2 cut(s)	31, 570
Bsp1720I	GCTNAGC	2 cut(s)	167, 374
BspACI	CCGC	4 cut(s)	117, 340, 353, 430
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	159, 366, 621
BspEI	TCCGGA	1 cut(s)	567
BspFNI	CGCG	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	297, 572
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	2 cut(s)	565, 578
BspT107I	GGYRCC	1 cut(s)	295
BsrFI	RCCGGY	2 cut(s)	336, 643
BsrGI	TGTACA	1 cut(s)	736
BssAI	RCCGGY	2 cut(s)	336, 643
BssECI	CCNNGG	2 cut(s)	436, 631
BssMI	GATC	2 cut(s)	31, 570
BssNI	GRCGYC	1 cut(s)	650
BssT1I	CCWWGG	2 cut(s)	436, 631
Bst2UI	CCWGG	2 cut(s)	173, 770
Bst6I	CTCTTC	3 cut(s)	662, 706, 826
BstACI	GRCGYC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	736
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	167, 374, 608
BstF5I	GGATG	2 cut(s)	185, 424
BstFNI	CGCG	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	463, 556
BstKTI	GATC	2 cut(s)	34, 573
BstMAI	GTCTC	3 cut(s)	828, 904, 935
BstMBI	GATC	2 cut(s)	31, 570
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 337, 370, 438, 562
BstNI	CCWGG	2 cut(s)	173, 770
BstSCI	CCNGG	2 cut(s)	171, 768
BstSFI	CTRYAG	1 cut(s)	595
BstUI	CGCG	1 cut(s)	556
BstV1I	GCAGC	3 cut(s)	419, 673, 928
BstX2I	RGATCY	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	185, 424
Cac8I	GCNNGC	1 cut(s)	552
CaiI	CAGNNNCTG	1 cut(s)	615
CfoI	GCGC	2 cut(s)	463, 556
Cfr10I	RCCGGY	2 cut(s)	336, 643
Cfr13I	GGNCC	2 cut(s)	427, 604
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	2 cut(s)	140, 737
CviAII	CATG	2 cut(s)	318, 935
CviQI	GTAC	2 cut(s)	140, 737
DdeI	CTNAG	3 cut(s)	167, 374, 608
DpnI	GATC	2 cut(s)	33, 572
DpnII	GATC	2 cut(s)	31, 570
Eam1104I	CTCTTC	3 cut(s)	662, 706, 826
EarI	CTCTTC	3 cut(s)	662, 706, 826
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	436, 631
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	427, 604
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	565
EcoRII	CCWGG	2 cut(s)	171, 768
EcoT14I	CCWWGG	2 cut(s)	436, 631
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	2 cut(s)	436, 631
FaeI	CATG	2 cut(s)	321, 938
FaiI	YATR	4 cut(s)	8, 289, 319, 936
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	2 cut(s)	317, 934
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	433, 687, 942
FokI	GGATG	2 cut(s)	192, 431
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	3 cut(s)	433, 687, 942
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	2 cut(s)	462, 555
GluI	GCNGC	3 cut(s)	433, 687, 942
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	3 cut(s)	337, 568, 644
HgaI	GACGC	1 cut(s)	658
HhaI	GCGC	2 cut(s)	463, 556
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	2 cut(s)	321, 938
Hin6I	GCGC	2 cut(s)	461, 554
HinP1I	GCGC	2 cut(s)	461, 554
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	712
HpaII	CCGG	3 cut(s)	337, 568, 644
HphI	GGTGA	7 cut(s)	42, 131, 265, 326, 367, 436, 545
Hpy166II	GTNNAC	4 cut(s)	69, 97, 142, 739
Hpy188I	TCNGA	5 cut(s)	247, 604, 611, 658, 844
Hpy188III	TCNNGA	2 cut(s)	568, 694
Hpy8I	GTNNAC	4 cut(s)	69, 97, 142, 739
Hpy99I	CGWCG	2 cut(s)	251, 652
HpyAV	CCTTC	6 cut(s)	20, 112, 487, 587, 848, 852
HpyCH4IV	ACGT	4 cut(s)	71, 249, 291, 323
HpyCH4V	TGCA	3 cut(s)	490, 728, 762
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 337, 370, 438, 562
HpyF3I	CTNAG	3 cut(s)	167, 374, 608
HpySE526I	ACGT	4 cut(s)	71, 249, 291, 323
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	2 cut(s)	321, 938
HspAI	GCGC	2 cut(s)	461, 554
Kpn2I	TCCGGA	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	31, 570
LmnI	GCTCC	5 cut(s)	76, 248, 328, 562, 570
Lsp1109I	GCAGC	3 cut(s)	419, 673, 928
LweI	GCATC	2 cut(s)	340, 602
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	4 cut(s)	71, 249, 291, 323
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	33, 572
MboI	GATC	2 cut(s)	31, 570
MflI	RGATCY	1 cut(s)	570
MhlI	GDGCHC	2 cut(s)	81, 567
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	4 cut(s)	54, 115, 270, 306
MroI	TCCGGA	1 cut(s)	567
MseI	TTAA	1 cut(s)	961
MslI	CAYNNNNRTG	2 cut(s)	316, 452
MspA1I	CMGCKG	2 cut(s)	432, 722
MspI	CCGG	3 cut(s)	337, 568, 644
MspR9I	CCNGG	2 cut(s)	173, 770
MvaI	CCWGG	2 cut(s)	173, 770
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	5 cut(s)	229, 337, 370, 438, 562
NdeII	GATC	2 cut(s)	31, 570
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	2 cut(s)	321, 938
NlaIV	GGNNCC	2 cut(s)	297, 572
NmuCI	GTSAC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	712
PflMI	CCANNNNNTGG	1 cut(s)	472
PfoI	TCCNGGA	1 cut(s)	768
PkrI	GCNGC	3 cut(s)	434, 688, 943
Ppu21I	YACGTR	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	171, 768
PspGI	CCWGG	2 cut(s)	171, 768
PspN4I	GGNNCC	2 cut(s)	297, 572
PspPI	GGNCC	2 cut(s)	427, 604
PstNI	CAGNNNCTG	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	570
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	2 cut(s)	141, 738
RsaNI	GTAC	2 cut(s)	140, 737
RseI	CAYNNNNRTG	2 cut(s)	316, 452
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	961
SatI	GCNGC	3 cut(s)	433, 687, 942
Sau3AI	GATC	2 cut(s)	31, 570
Sau96I	GGNCC	2 cut(s)	427, 604
ScrFI	CCNGG	2 cut(s)	173, 770
SduI	GDGCHC	2 cut(s)	81, 567
SfaNI	GCATC	2 cut(s)	340, 602
SfcI	CTRYAG	1 cut(s)	595
SgrAI	CRCCGGYG	2 cut(s)	336, 643
SinI	GGWCC	2 cut(s)	427, 604
SmiMI	CAYNNNNRTG	2 cut(s)	316, 452
Sse9I	AATT	1 cut(s)	510
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	4 cut(s)	117, 340, 353, 430
SspMI	CTAG	1 cut(s)	551
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	171, 768
StyI	CCWWGG	2 cut(s)	436, 631
TaiI	ACGT	4 cut(s)	74, 252, 294, 326
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	510
TatI	WGTACW	2 cut(s)	139, 736
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	1 cut(s)	961
Tru9I	TTAA	1 cut(s)	961
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	432, 686, 941
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 94
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	2 cut(s)	427, 604
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.