RLG00000013452
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000751
Physical Location & Seq
Reverse (-)
31650067 .. 31650937
871 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013452

Sequence Viewer

Length: 786 bp
ATGAACATGTCTCGCTTTGGGGTTGAAGGAGATCACCGAGGAACAACTACACCAAGAATGTTTGAGTGGACGCTGGAGCACCACAAACAGTTCGTGAATACCTTCATCTTCTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCTTAAAGGCGGAGCTGATGAGCCTGGCGGGGTGTTGTTGTAGAAGCTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTACTACAGAAAACGTCCGAAGCATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTAAAAAGATGTCATCGCCATGGACGCTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAACTAGGTGGGCTTAGCAATAGCAAGACTACCCCAAAGGCCGTGCTGAAGTTAATGGATGTGGAGGACCGCTGCCAAGGCCTCACCACAAAGATGATAGCACACCACCTTTTAGGGTTGTATCATTTGCAGAAGGAAACTCAACGGCTAATGGCTTTTGGTCTGGCCGGTGGTGAAGAAGAAAGAGAGCTATCGCTTAGGGAGCTCCAGTACCTTGTTTTTAAAGGATTGCCCCAACAACGAAATAACGTTCTATACACAAATGTAAAAGATCCTCTACTCCGACAGCACCTGGGGCTCCTCAAACAAGTTAATATGGCACACCGAATAAGATTGCACATTATTAAGTCTGAGAGGGAAGATGATCATGATGTCCAAGATAGTGATCTGAACATGGATGTCGATCCTGAAAATGTGGAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

262

Amino Acids

29.86

Weight (kDa)

6.93

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AciI CCGC 6 cut(s) 117, 158, 176, 340, 353, 430
AclI AACGTT 1 cut(s) 609
AclWI GGATC 2 cut(s) 626, 758
AcoI YGGCCR 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 3 cut(s) 141, 231, 572
AfiI CCNNNNNNNGG 2 cut(s) 225, 292
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 2 cut(s) 26, 281
AjnI CCWGG 2 cut(s) 171, 651
AluBI AGCT 4 cut(s) 163, 195, 550, 565
AluI AGCT 4 cut(s) 163, 195, 550, 565
Alw21I GWGCWC 2 cut(s) 81, 567
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 626, 758
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 3 cut(s) 399, 439, 525
ApeKI GCWGC 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 7 cut(s) 26, 131, 265, 326, 367, 436, 545
AvaII GGWCC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 567, 660
Bbv12I GWGCWC 2 cut(s) 81, 567
BbvI GCAGC 1 cut(s) 419
BceAI ACGGC 2 cut(s) 386, 521
BciT130I CCWGG 2 cut(s) 173, 653
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 233
BglI GCCNNNNNGGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 433
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 2 cut(s) 173, 653
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 297, 659
BmrFI CCNGG 2 cut(s) 173, 653
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 3 cut(s) 95, 347, 551
Bpu10I CCTNAGC 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 374
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 2 cut(s) 744, 762
BsaJI CCNNGG 4 cut(s) 37, 317, 436, 652
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 292
Bse118I RCCGGY 2 cut(s) 336, 527
Bse1I ACTGG 1 cut(s) 568
Bse8I GATNNNNATC 2 cut(s) 744, 762
BseBI CCWGG 2 cut(s) 173, 653
BseDI CCNNGG 4 cut(s) 37, 317, 436, 652
BseGI GGATG 2 cut(s) 424, 763
BseJI GATNNNNATC 2 cut(s) 744, 762
BseLI CCNNNNNNNGG 2 cut(s) 225, 292
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 568
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 1 cut(s) 419
BshFI GGCC 3 cut(s) 401, 441, 527
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 81, 567
BsiSI CCGG 2 cut(s) 337, 528
BslI CCNNNNNNNGG 2 cut(s) 225, 292
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 3 cut(s) 401, 441, 527
Bsp1286I GDGCHC 3 cut(s) 81, 567, 660
Bsp143I GATC 5 cut(s) 31, 631, 724, 745, 763
Bsp1720I GCTNAGC 1 cut(s) 374
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 6 cut(s) 117, 158, 176, 340, 353, 430
BspANI GGCC 3 cut(s) 401, 441, 527
BspCNI CTCAG 1 cut(s) 703
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 2 cut(s) 297, 659
BspPI GGATC 2 cut(s) 626, 758
BspT107I GGYRCC 1 cut(s) 295
BsrFI RCCGGY 2 cut(s) 336, 527
BsrI ACTGG 1 cut(s) 568
BssAI RCCGGY 2 cut(s) 336, 527
BssECI CCNNGG 4 cut(s) 37, 317, 436, 652
BssMI GATC 5 cut(s) 31, 631, 724, 745, 763
BssT1I CCWWGG 2 cut(s) 317, 436
Bst2UI CCWGG 2 cut(s) 173, 653
Bst4CI ACNGT 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 374, 557, 711
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 424, 763
BstKTI GATC 5 cut(s) 34, 634, 727, 748, 766
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 5 cut(s) 31, 631, 724, 745, 763
BstMWI GCNNNNNNNGC 6 cut(s) 155, 322, 337, 438, 562, 655
BstNI CCWGG 2 cut(s) 173, 653
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 171, 651
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuRI GGCC 3 cut(s) 401, 441, 527
BtgI CCRYGG 1 cut(s) 317
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 2 cut(s) 424, 763
CaiI CAGNNNCTG 1 cut(s) 652
CciI TCATGA 1 cut(s) 727
Cfr10I RCCGGY 2 cut(s) 336, 527
Cfr13I GGNCC 1 cut(s) 427
CseI GACGC 2 cut(s) 79, 331
Csp6I GTAC 3 cut(s) 140, 230, 571
CviAII CATG 4 cut(s) 7, 318, 728, 754
CviQI GTAC 3 cut(s) 140, 230, 571
DdeI CTNAG 3 cut(s) 374, 557, 711
DpnI GATC 5 cut(s) 33, 633, 726, 747, 765
DpnII GATC 5 cut(s) 31, 631, 724, 745, 763
DraI TTTAAA 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 525
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 317, 436
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 2 cut(s) 567, 660
Eco47I GGWCC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 171, 651
EcoT14I CCWWGG 2 cut(s) 317, 436
EcoT38I GRGCYC 2 cut(s) 567, 660
ErhI CCWWGG 2 cut(s) 317, 436
FaeI CATG 4 cut(s) 10, 321, 731, 757
FaiI YATR 7 cut(s) 8, 289, 319, 616, 677, 729, 755
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 4 cut(s) 6, 317, 727, 753
FauI CCCGC 2 cut(s) 169, 333
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 2 cut(s) 431, 770
FriOI GRGCYC 2 cut(s) 567, 660
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 1 cut(s) 365
GluI GCNGC 1 cut(s) 433
GsuI CTGGAG 3 cut(s) 95, 347, 551
HaeIII GGCC 3 cut(s) 401, 441, 527
HapII CCGG 2 cut(s) 337, 528
HgaI GACGC 2 cut(s) 79, 331
Hin1II CATG 4 cut(s) 10, 321, 731, 757
HindIII AAGCTT 1 cut(s) 193
HpaII CCGG 2 cut(s) 337, 528
HphI GGTGA 7 cut(s) 26, 131, 265, 326, 367, 436, 545
Hpy166II GTNNAC 2 cut(s) 69, 142
Hpy188I TCNGA 4 cut(s) 247, 644, 712, 750
Hpy188III TCNNGA 3 cut(s) 94, 728, 767
Hpy8I GTNNAC 2 cut(s) 69, 142
HpyAV CCTTC 3 cut(s) 20, 112, 487
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 3 cut(s) 242, 291, 609
HpyCH4V TGCA 2 cut(s) 490, 697
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 322, 337, 438, 562, 655
HpyF3I CTNAG 3 cut(s) 374, 557, 711
HpySE526I ACGT 3 cut(s) 242, 291, 609
Hsp92II CATG 4 cut(s) 10, 321, 731, 757
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 5 cut(s) 31, 631, 724, 745, 763
LmnI GCTCC 7 cut(s) 76, 160, 328, 562, 570, 663, 778
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 365
MaeII ACGT 3 cut(s) 242, 291, 609
MaeIII GTNAC 1 cut(s) 271
MalI GATC 5 cut(s) 33, 633, 726, 747, 765
MboI GATC 5 cut(s) 31, 631, 724, 745, 763
MboII GAAGA 4 cut(s) 100, 548, 551, 731
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 3 cut(s) 81, 567, 660
MmeI TCCRAC 2 cut(s) 115, 667
MnlI CCTC 8 cut(s) 32, 271, 343, 418, 452, 645, 671, 708
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 5 cut(s) 152, 413, 582, 672, 705
MslI CAYNNNNRTG 2 cut(s) 316, 452
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 2 cut(s) 337, 528
MspR9I CCNGG 2 cut(s) 173, 653
MvaI CCWGG 2 cut(s) 173, 653
MwoI GCNNNNNNNGC 6 cut(s) 155, 322, 337, 438, 562, 655
NcoI CCATGG 1 cut(s) 317
NdeII GATC 5 cut(s) 31, 631, 724, 745, 763
NlaIII CATG 4 cut(s) 10, 321, 731, 757
NlaIV GGNNCC 2 cut(s) 297, 659
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 10
PagI TCATGA 1 cut(s) 727
PceI AGGCCT 1 cut(s) 441
PciI ACATGT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 434
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 171, 651
PspGI CCWGG 2 cut(s) 171, 651
PspN4I GGNNCC 2 cut(s) 297, 659
PspPI GGNCC 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 631
RsaI GTAC 3 cut(s) 141, 231, 572
RsaNI GTAC 3 cut(s) 140, 230, 571
RseI CAYNNNNRTG 2 cut(s) 316, 452
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 5 cut(s) 152, 413, 582, 672, 705
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 5 cut(s) 31, 631, 724, 745, 763
Sau96I GGNCC 1 cut(s) 427
ScrFI CCNGG 2 cut(s) 173, 653
SduI GDGCHC 3 cut(s) 81, 567, 660
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 233
SgrAI CRCCGGYG 1 cut(s) 336
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 2 cut(s) 316, 452
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 6 cut(s) 117, 158, 176, 340, 353, 430
SspMI CTAG 1 cut(s) 365
SstI GAGCTC 1 cut(s) 567
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 171, 651
StyI CCWWGG 2 cut(s) 317, 436
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 3 cut(s) 245, 294, 612
TaqI TCGA 1 cut(s) 762
TatI WGTACW 1 cut(s) 139
Tru1I TTAA 5 cut(s) 152, 413, 582, 672, 705
Tru9I TTAA 5 cut(s) 152, 413, 582, 672, 705
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 17, 94
VpaK11BI GGWCC 1 cut(s) 427
XceI RCATGY 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.