Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Reverse (-)

31684673 .. 31685558

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAACATGTCTCGCTTTGGGGTTGAAGGAGATCACCGAGGAACAACCACACCAAGAATGTTTGAGTGGACGTTGGAGCACCACAAACAGTTCGTGAATACCTTCATCTTCTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCGTTAAAGGCGGAGCTGTTGAGCCTGGCGGGGTGTTGTTGTAGAAGCTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTACTACAGAAAAGGTCCGAAGCATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATATGTGGCACCTAAAAAGATGTCATCGCCATGGACGCTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAAATAGGTGGGCTTAGCAATAGCAAGACTACCCCAAAGGCCGTGCTGAAGTTAATGGATGTGGAGGACCGCTGCCAAGGCCTCACCACAAAGATGATAGCACACCACCTTTTAGGGTTGTATCATTTGCAGAAGGAAACTCAACGGCTAATGGCTTTTGGTCTGGCCGGTGGTGAAGAAGAAAGAGAGCTATCGCTTAGGGAGCTCCAGCACCTTGTTTTTAAAGGGTTGCCCCAAGAACGAAATAACGTTCTATACACAAATGTAAAAGATCCTCACTCCGACAGCACCTGGGGCACCTCAAACAAATCGAAAAGAAGAGAAAAAGGCAACAAGAAGAGGAGATACTGGAGTAGGGCTGTACGTGTTCAGGATGATCATGATGTCCAAGATAGTGATCTGAACATGGATGTCGATCCTGGAAATGTGGACAGTAACCGTATATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

270

Amino Acids

30.78

Weight (kDa)

9.08

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	295, 656
AciI	CCGC	6 cut(s)	117, 158, 176, 340, 353, 430
AclI	AACGTT	1 cut(s)	609
AclWI	GGATC	2 cut(s)	626, 770
AcoI	YGGCCR	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	3 cut(s)	141, 231, 723
AfiI	CCNNNNNNNGG	2 cut(s)	225, 292
AflIII	ACRYGT	2 cut(s)	6, 724
AgsI	TTSAA	2 cut(s)	26, 281
AjnI	CCWGG	3 cut(s)	171, 650, 778
AluBI	AGCT	4 cut(s)	163, 195, 550, 565
AluI	AGCT	4 cut(s)	163, 195, 550, 565
Alw21I	GWGCWC	2 cut(s)	81, 567
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	626, 770
AlwNI	CAGNNNCTG	1 cut(s)	651
AoxI	GGCC	3 cut(s)	399, 439, 525
ApeKI	GCWGC	1 cut(s)	432
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	243, 427
AsuHPI	GGTGA	7 cut(s)	26, 131, 265, 326, 367, 436, 545
AvaII	GGWCC	2 cut(s)	243, 427
BaeGI	GKGCMC	1 cut(s)	659
BaeI	ACNNNNGTAYC	2 cut(s)	697, 730
BanI	GGYRCC	2 cut(s)	295, 656
BanII	GRGCYC	1 cut(s)	567
BarI	GAAGNNNNNNTAC	2 cut(s)	689, 721
Bbv12I	GWGCWC	2 cut(s)	81, 567
BbvI	GCAGC	1 cut(s)	419
BceAI	ACGGC	2 cut(s)	386, 521
BciT130I	CCWGG	3 cut(s)	173, 652, 780
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	3 cut(s)	173, 652, 780
Bme18I	GGWCC	2 cut(s)	243, 427
BmgT120I	GGNCC	2 cut(s)	243, 427
BmiI	GGNNCC	2 cut(s)	297, 658
BmrFI	CCNGG	3 cut(s)	173, 652, 780
BmsI	GCATC	1 cut(s)	340
BpmI	CTGGAG	3 cut(s)	347, 551, 730
Bpu10I	CCTNAGC	1 cut(s)	557
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	725
BsaBI	GATNNNNATC	2 cut(s)	756, 774
BsaJI	CCNNGG	4 cut(s)	37, 317, 436, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 292
Bse118I	RCCGGY	2 cut(s)	336, 527
Bse1I	ACTGG	1 cut(s)	713
Bse8I	GATNNNNATC	2 cut(s)	756, 774
BseBI	CCWGG	3 cut(s)	173, 652, 780
BseDI	CCNNGG	4 cut(s)	37, 317, 436, 651
BseGI	GGATG	3 cut(s)	424, 739, 775
BseJI	GATNNNNATC	2 cut(s)	756, 774
BseLI	CCNNNNNNNGG	2 cut(s)	225, 292
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	1 cut(s)	715
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	3 cut(s)	401, 441, 527
BshNI	GGYRCC	2 cut(s)	295, 656
BsiHKAI	GWGCWC	2 cut(s)	81, 567
BsiSI	CCGG	2 cut(s)	337, 528
BslI	CCNNNNNNNGG	2 cut(s)	225, 292
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	401, 441, 527
Bsp1286I	GDGCHC	3 cut(s)	81, 567, 659
Bsp143I	GATC	5 cut(s)	31, 631, 736, 757, 775
Bsp1720I	GCTNAGC	1 cut(s)	374
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	6 cut(s)	117, 158, 176, 340, 353, 430
BspANI	GGCC	3 cut(s)	401, 441, 527
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	297, 658
BspPI	GGATC	2 cut(s)	626, 770
BspT107I	GGYRCC	2 cut(s)	295, 656
BsrFI	RCCGGY	2 cut(s)	336, 527
BsrI	ACTGG	1 cut(s)	713
BssAI	RCCGGY	2 cut(s)	336, 527
BssECI	CCNNGG	4 cut(s)	37, 317, 436, 651
BssMI	GATC	5 cut(s)	31, 631, 736, 757, 775
BssT1I	CCWWGG	2 cut(s)	317, 436
Bst2UI	CCWGG	3 cut(s)	173, 652, 780
Bst4CI	ACNGT	3 cut(s)	90, 794, 800
Bst6I	CTCTTC	2 cut(s)	673, 692
BstBAI	YACGTR	1 cut(s)	725
BstDEI	CTNAG	2 cut(s)	374, 557
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	424, 739, 775
BstKTI	GATC	5 cut(s)	34, 634, 739, 760, 778
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	5 cut(s)	31, 631, 736, 757, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 322, 337, 438, 562, 654
BstNI	CCWGG	3 cut(s)	173, 652, 780
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	171, 650, 778
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	3 cut(s)	401, 441, 527
BtgI	CCRYGG	1 cut(s)	317
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	424, 739, 775
CaiI	CAGNNNCTG	1 cut(s)	651
CciI	TCATGA	1 cut(s)	739
Cfr10I	RCCGGY	2 cut(s)	336, 527
Cfr13I	GGNCC	2 cut(s)	243, 427
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	3 cut(s)	140, 230, 722
CviAII	CATG	4 cut(s)	7, 318, 740, 766
CviQI	GTAC	3 cut(s)	140, 230, 722
DdeI	CTNAG	2 cut(s)	374, 557
DpnI	GATC	5 cut(s)	33, 633, 738, 759, 777
DpnII	GATC	5 cut(s)	31, 631, 736, 757, 775
DraI	TTTAAA	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	673, 692
EarI	CTCTTC	2 cut(s)	673, 692
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	317, 436
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	243, 427
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	565
EcoRII	CCWGG	3 cut(s)	171, 650, 778
EcoT14I	CCWWGG	2 cut(s)	317, 436
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	2 cut(s)	317, 436
FaeI	CATG	4 cut(s)	10, 321, 743, 769
FaiI	YATR	9 cut(s)	8, 289, 291, 319, 616, 741, 767, 803, 805
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	4 cut(s)	6, 317, 739, 765
FauI	CCCGC	2 cut(s)	169, 333
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	3 cut(s)	431, 746, 782
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	433
GluI	GCNGC	1 cut(s)	433
GsuI	CTGGAG	3 cut(s)	347, 551, 730
HaeIII	GGCC	3 cut(s)	401, 441, 527
HapII	CCGG	2 cut(s)	337, 528
HgaI	GACGC	1 cut(s)	331
Hin1II	CATG	4 cut(s)	10, 321, 743, 769
HindIII	AAGCTT	1 cut(s)	193
HpaII	CCGG	2 cut(s)	337, 528
HphI	GGTGA	7 cut(s)	26, 131, 265, 326, 367, 436, 545
Hpy166II	GTNNAC	3 cut(s)	69, 142, 790
Hpy188I	TCNGA	3 cut(s)	247, 643, 762
Hpy188III	TCNNGA	3 cut(s)	94, 731, 740
Hpy8I	GTNNAC	3 cut(s)	69, 142, 790
HpyAV	CCTTC	3 cut(s)	20, 112, 487
HpyCH4III	ACNGT	3 cut(s)	90, 794, 800
HpyCH4IV	ACGT	3 cut(s)	71, 609, 724
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 322, 337, 438, 562, 654
HpyF3I	CTNAG	2 cut(s)	374, 557
HpySE526I	ACGT	3 cut(s)	71, 609, 724
Hsp92II	CATG	4 cut(s)	10, 321, 743, 769
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	31, 631, 736, 757, 775
LmnI	GCTCC	5 cut(s)	76, 160, 328, 562, 570
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	3 cut(s)	71, 609, 724
MaeIII	GTNAC	2 cut(s)	271, 794
MalI	GATC	5 cut(s)	33, 633, 738, 759, 777
MboI	GATC	5 cut(s)	31, 631, 736, 757, 775
MboII	GAAGA	5 cut(s)	100, 548, 551, 690, 709
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	3 cut(s)	81, 567, 659
MmeI	TCCRAC	3 cut(s)	54, 115, 666
MnlI	CCTC	8 cut(s)	32, 271, 343, 418, 452, 645, 670, 693
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	3 cut(s)	152, 413, 582
MslI	CAYNNNNRTG	2 cut(s)	316, 452
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	2 cut(s)	337, 528
MspR9I	CCNGG	3 cut(s)	173, 652, 780
MvaI	CCWGG	3 cut(s)	173, 652, 780
MwoI	GCNNNNNNNGC	6 cut(s)	155, 322, 337, 438, 562, 654
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	5 cut(s)	31, 631, 736, 757, 775
NlaIII	CATG	4 cut(s)	10, 321, 743, 769
NlaIV	GGNNCC	2 cut(s)	297, 658
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	10
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	441
PciI	ACATGT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	725
PscI	ACATGT	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	609
Psp6I	CCWGG	3 cut(s)	171, 650, 778
PspGI	CCWGG	3 cut(s)	171, 650, 778
PspN4I	GGNNCC	2 cut(s)	297, 658
PspPI	GGNCC	2 cut(s)	243, 427
PstNI	CAGNNNCTG	1 cut(s)	651
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	3 cut(s)	141, 231, 723
RsaNI	GTAC	3 cut(s)	140, 230, 722
RseI	CAYNNNNRTG	2 cut(s)	316, 452
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	3 cut(s)	152, 413, 582
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	5 cut(s)	31, 631, 736, 757, 775
Sau96I	GGNCC	2 cut(s)	243, 427
ScrFI	CCNGG	3 cut(s)	173, 652, 780
SduI	GDGCHC	3 cut(s)	81, 567, 659
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	233
SgrAI	CRCCGGYG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	243, 427
SmiMI	CAYNNNNRTG	2 cut(s)	316, 452
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	6 cut(s)	117, 158, 176, 340, 353, 430
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	3 cut(s)	171, 650, 778
StyI	CCWWGG	2 cut(s)	317, 436
TaaI	ACNGT	3 cut(s)	90, 794, 800
TaiI	ACGT	3 cut(s)	74, 612, 727
TaqI	TCGA	2 cut(s)	671, 774
TatI	WGTACW	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	152, 413, 582
Tru9I	TTAA	3 cut(s)	152, 413, 582
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 94
VpaK11BI	GGWCC	2 cut(s)	243, 427
XceI	RCATGY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.