RLG00000004659
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000751
Physical Location & Seq
Forward (+)
61228389 .. 61229252
864 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004659

Sequence Viewer

Length: 864 bp
ATGAATCCAAATGCCACGTGGAGTTGGTATCCAGTTAGGATTGAGACATTCAATCACTATATAAGGACCTCAGTCGCAGACAAAAGGAAATTAGCAACCTCATTTGCTATCAAGATGAACATGTCTCGTTCCGGGGTCGAAGGAGATCGGCGACCGGGGCGAGGAACAACTTCACCAAGAATGTTTGAGTGGACTTTGGAGCACCACAAGAAGTGTGTTGACACCTTCATCTTGTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTGAAGGCGGAGCTGTTGAGCTTGACATGGTGTTGTTGTAGAAGCTTTTACCTTGACTTCCATATTTCCTTGCTTGGGGTACTACAGAAAAGCTCCGAAACATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTCATGGACGCTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAGCTCGGTGGACTTAGCAGTGGCAAGACTACCCCAAAGGCCGTGCTGAAGCTGATGGATGAGGAGGACCGCCGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGAGTAATTGCTTTTGGATTGGCTGGTGGTGAAGATGAAAGAGAGCTAGCGCTTAGGGAGCTTCGATACCTTGTTTTTAGAGAATTTCCCCAACTACGGAATATCTTTCTATACACAAATGTAAAAGATCCTCTTCTCCGACTACACCTTGGGCTCCTCAAACAAGTTAATATGTCACACCGGATAAGATTACAGATTATGAAGTCTGAGTGGGAAGTATTAACAGCTTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

288

Amino Acids

33.07

Weight (kDa)

9.62

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 595
AciI CCGC 6 cut(s) 240, 281, 463, 476, 553, 556
AclWI GGATC 1 cut(s) 749
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 2 cut(s) 296, 551
AcvI CACGTG 1 cut(s) 18
AfaI GTAC 2 cut(s) 264, 354
AfeI AGCGCT 1 cut(s) 678
AfiI CCNNNNNNNGG 6 cut(s) 161, 280, 348, 415, 595, 723
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 2 cut(s) 52, 404
AluBI AGCT 9 cut(s) 286, 294, 318, 366, 487, 535, 673, 688, 854
AluI AGCT 9 cut(s) 286, 294, 318, 366, 487, 535, 673, 688, 854
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 38, 129
AlwI GGATC 1 cut(s) 749
Aor51HI AGCGCT 1 cut(s) 678
AoxI GGCC 2 cut(s) 522, 562
ApoI RAATTY 1 cut(s) 710
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 2 cut(s) 586, 679
AspS9I GGNCC 2 cut(s) 66, 550
AsuC2I CCSGG 2 cut(s) 133, 156
AsuHPI GGTGA 7 cut(s) 165, 254, 388, 449, 490, 559, 668
AsuNHI GCTAGC 1 cut(s) 673
AvaII GGWCC 2 cut(s) 66, 550
BanI GGYRCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 783
BbrPI CACGTG 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 1 cut(s) 532
BceAI ACGGC 1 cut(s) 509
BciVI GTATCC 1 cut(s) 39
BcnI CCSGG 2 cut(s) 133, 156
BcoDI GTCTC 2 cut(s) 38, 129
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 680
BfuI GTATCC 1 cut(s) 39
BglI GCCNNNNNGGC 2 cut(s) 278, 561
BisI GCNGC 1 cut(s) 556
BlsI GCNGC 1 cut(s) 557
Bme1390I CCNGG 2 cut(s) 133, 156
Bme18I GGWCC 2 cut(s) 66, 550
BmgT120I GGNCC 2 cut(s) 66, 550
BmiI GGNNCC 2 cut(s) 420, 782
BmrFI CCNGG 2 cut(s) 133, 156
BmsI GCATC 1 cut(s) 463
BmtI GCTAGC 1 cut(s) 677
BoxI GACNNNNGTC 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 680
BpuMI CCSGG 2 cut(s) 133, 156
BsaAI YACGTR 2 cut(s) 18, 415
BsaJI CCNNGG 4 cut(s) 132, 155, 559, 775
BsaWI WCCGGW 1 cut(s) 807
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 280, 348, 415, 595, 723
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 32
BseDI CCNNGG 4 cut(s) 132, 155, 559, 775
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 6 cut(s) 161, 280, 348, 415, 595, 723
BseMII CTCAG 2 cut(s) 84, 825
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 560, 773
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 2 cut(s) 524, 564
BshNI GGYRCC 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 4 cut(s) 132, 155, 460, 808
BslI CCNNNNNNNGG 6 cut(s) 161, 280, 348, 415, 595, 723
BsmAI GTCTC 2 cut(s) 38, 129
BsnI GGCC 2 cut(s) 524, 564
Bsp1286I GDGCHC 2 cut(s) 204, 783
Bsp143I GATC 2 cut(s) 145, 754
BspACI CCGC 6 cut(s) 240, 281, 463, 476, 553, 556
BspANI GGCC 2 cut(s) 524, 564
BspCNI CTCAG 2 cut(s) 83, 826
BspLI GGNNCC 2 cut(s) 420, 782
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 4 cut(s) 132, 155, 559, 775
BssMI GATC 2 cut(s) 145, 754
BssT1I CCWWGG 2 cut(s) 559, 775
Bst6I CTCTTC 1 cut(s) 765
BstBAI YACGTR 2 cut(s) 18, 415
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 4 cut(s) 70, 497, 680, 834
BstF5I GGATG 1 cut(s) 547
BstH2I RGCGCY 1 cut(s) 680
BstHHI GCGC 2 cut(s) 586, 679
BstKTI GATC 2 cut(s) 148, 757
BstMAI GTCTC 2 cut(s) 38, 129
BstMBI GATC 2 cut(s) 145, 754
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 5 cut(s) 157, 278, 460, 561, 685
BstNSI RCATGY 1 cut(s) 124
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 2 cut(s) 131, 154
BstSFI CTRYAG 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 754
BstYI RGATCY 1 cut(s) 754
BsuI GTATCC 1 cut(s) 39
BsuRI GGCC 2 cut(s) 524, 564
BtsCI GGATG 1 cut(s) 547
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 675
CfoI GCGC 2 cut(s) 586, 679
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 2 cut(s) 66, 550
CseI GACGC 1 cut(s) 454
Csp6I GTAC 2 cut(s) 263, 353
CviAII CATG 4 cut(s) 121, 300, 441, 861
CviQI GTAC 2 cut(s) 263, 353
DdeI CTNAG 4 cut(s) 70, 497, 680, 834
DpnI GATC 2 cut(s) 147, 756
DpnII GATC 2 cut(s) 145, 754
Eam1104I CTCTTC 1 cut(s) 765
EarI CTCTTC 1 cut(s) 765
EciI GGCGGA 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 559, 775
Eco147I AGGCCT 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 783
Eco47I GGWCC 2 cut(s) 66, 550
Eco47III AGCGCT 1 cut(s) 678
Eco57I CTGAAG 2 cut(s) 296, 551
Eco72I CACGTG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 559, 775
EcoT38I GRGCYC 1 cut(s) 783
ErhI CCWWGG 2 cut(s) 559, 775
FaeI CATG 4 cut(s) 124, 303, 444, 864
FalI AAGNNNNNCTT 4 cut(s) 384, 416, 744, 776
FatI CATG 4 cut(s) 120, 299, 440, 860
FauI CCCGC 1 cut(s) 456
Fnu4HI GCNGC 1 cut(s) 556
FokI GGATG 1 cut(s) 554
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 1 cut(s) 556
FspBI CTAG 1 cut(s) 674
GlaI GCGC 2 cut(s) 585, 678
GluI GCNGC 1 cut(s) 556
GsuI CTGGAG 1 cut(s) 470
HaeII RGCGCY 1 cut(s) 680
HaeIII GGCC 2 cut(s) 524, 564
HapII CCGG 4 cut(s) 132, 155, 460, 808
HgaI GACGC 1 cut(s) 454
HhaI GCGC 2 cut(s) 586, 679
Hin1II CATG 4 cut(s) 124, 303, 444, 864
Hin6I GCGC 2 cut(s) 584, 677
HinP1I GCGC 2 cut(s) 584, 677
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 1 cut(s) 4
HpaII CCGG 4 cut(s) 132, 155, 460, 808
HphI GGTGA 7 cut(s) 165, 254, 388, 449, 490, 559, 668
Hpy166II GTNNAC 4 cut(s) 192, 220, 265, 494
Hpy188I TCNGA 3 cut(s) 370, 767, 835
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 4 cut(s) 192, 220, 265, 494
HpyAV CCTTC 4 cut(s) 134, 235, 271, 610
HpyCH4IV ACGT 2 cut(s) 17, 414
HpyCH4V TGCA 2 cut(s) 613, 860
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 278, 460, 561, 685
HpyF3I CTNAG 4 cut(s) 70, 497, 680, 834
HpySE526I ACGT 2 cut(s) 17, 414
Hsp92II CATG 4 cut(s) 124, 303, 444, 864
HspAI GCGC 2 cut(s) 584, 677
Kzo9I GATC 2 cut(s) 145, 754
LmnI GCTCC 6 cut(s) 199, 283, 371, 451, 685, 786
LpnPI CCDG 8 cut(s) 45, 145, 168, 287, 434, 473, 636, 821
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 674
MaeII ACGT 2 cut(s) 17, 414
MaeIII GTNAC 2 cut(s) 394, 801
MalI GATC 2 cut(s) 147, 756
MboI GATC 2 cut(s) 145, 754
MboII GAAGA 2 cut(s) 671, 752
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 2 cut(s) 204, 783
MluCI AATT 3 cut(s) 89, 633, 710
MmeI TCCRAC 2 cut(s) 238, 790
MroXI GAANNNNTTC 1 cut(s) 169
MseI TTAA 2 cut(s) 795, 848
MslI CAYNNNNRTG 2 cut(s) 439, 575
MspI CCGG 4 cut(s) 132, 155, 460, 808
MspR9I CCNGG 2 cut(s) 133, 156
MwoI GCNNNNNNNGC 5 cut(s) 157, 278, 460, 561, 685
NciI CCSGG 2 cut(s) 133, 156
NdeII GATC 2 cut(s) 145, 754
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 4 cut(s) 124, 303, 444, 864
NlaIV GGNNCC 2 cut(s) 420, 782
NmuCI GTSAC 2 cut(s) 394, 801
NspI RCATGY 1 cut(s) 124
PceI AGGCCT 1 cut(s) 564
PciI ACATGT 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 1 cut(s) 557
PmaCI CACGTG 1 cut(s) 18
PmlI CACGTG 1 cut(s) 18
Ppu21I YACGTR 2 cut(s) 18, 415
PpuMI RGGWCCY 1 cut(s) 66
PscI ACATGT 1 cut(s) 120
PshAI GACNNNNGTC 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 66
PspCI CACGTG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 420, 782
PspPI GGNCC 2 cut(s) 66, 550
PspPPI RGGWCCY 1 cut(s) 66
PsuI RGATCY 1 cut(s) 754
RsaI GTAC 2 cut(s) 264, 354
RsaNI GTAC 2 cut(s) 263, 353
RseI CAYNNNNRTG 2 cut(s) 439, 575
SaqAI TTAA 2 cut(s) 795, 848
SatI GCNGC 1 cut(s) 556
Sau3AI GATC 2 cut(s) 145, 754
Sau96I GGNCC 2 cut(s) 66, 550
ScrFI CCNGG 2 cut(s) 133, 156
SduI GDGCHC 2 cut(s) 204, 783
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 356
SgrAI CRCCGGYG 1 cut(s) 459
SinI GGWCC 2 cut(s) 66, 550
SmiMI CAYNNNNRTG 2 cut(s) 439, 575
Sse9I AATT 3 cut(s) 89, 633, 710
SseBI AGGCCT 1 cut(s) 564
SsiI CCGC 6 cut(s) 240, 281, 463, 476, 553, 556
SspMI CTAG 1 cut(s) 674
StuI AGGCCT 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 131, 154
StyI CCWWGG 2 cut(s) 559, 775
TaiI ACGT 2 cut(s) 20, 417
TaqI TCGA 2 cut(s) 138, 691
TasI AATT 3 cut(s) 89, 633, 710
TatI WGTACW 1 cut(s) 262
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 795, 848
Tru9I TTAA 2 cut(s) 795, 848
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 2 cut(s) 394, 801
Tsp45I GTSAC 2 cut(s) 394, 801
TspDTI ATGAA 5 cut(s) 17, 131, 217, 678, 842
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 1 cut(s) 508
Van91I CCANNNNNTGG 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 66, 550
XapI RAATTY 1 cut(s) 710
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.