Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Reverse (-)

29038910 .. 29039554

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG289700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAACATATCTCGCTTCGGGGTCGAAGGAGATCGGCAAGAAACATCTTCACCAAAAATGTTTGAGTGGACGTTGGAGCACCACAAGAAGTGTGTTGGCACCTTCATCTTGTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGTGGAGCTGTTGAGCCTGGCAGGATGTTGTTGTAGAAGTTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTGCTACAAAAAAGCTCAGAAGTATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTCATGGACGTTGGAGCATCACCGGCGGGTTGTGGAGGCGGTGATACAGCTCGGTGGGCTTAGCAGTAGCAAGACTACCCCAAAGGCTGTGTTGAAGCTGATGGATGAGGAGGACCGCTGCCAAGGCCTCTCCACAAAGATGATAGCGGACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGACTAATTGCTTTTGGATTGGCTGGTGGTGAAGAAGAAAGAGAGCTAGCGCATAGGGAGCTCCGGTACCTTGTTTTTACTGGATTGCCCCAACAACGGAATAGCATTCTATACACAAAGTTAAAAGATCCTCTACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

214

Amino Acids

24.13

Weight (kDa)

8.24

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	570
AccB1I	GGYRCC	3 cut(s)	98, 295, 570
AccB7I	CCANNNNNTGG	1 cut(s)	472
AciI	CCGC	5 cut(s)	117, 340, 353, 430, 461
AclWI	GGATC	1 cut(s)	626
AfaI	GTAC	2 cut(s)	141, 572
AfiI	CCNNNNNNNGG	5 cut(s)	157, 225, 292, 472, 600
AgsI	TTSAA	2 cut(s)	281, 409
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	6 cut(s)	163, 243, 364, 412, 550, 565
AluI	AGCT	6 cut(s)	163, 243, 364, 412, 550, 565
Alw21I	GWGCWC	2 cut(s)	81, 567
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	427, 463
AsuHPI	GGTGA	6 cut(s)	42, 131, 265, 326, 367, 545
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	427, 463
BanI	GGYRCC	3 cut(s)	98, 295, 570
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	81, 567
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	551
BisI	GCNGC	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	427, 463
BmgT120I	GGNCC	2 cut(s)	427, 463
BmiI	GGNNCC	3 cut(s)	100, 297, 572
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	340
BmtI	GCTAGC	1 cut(s)	554
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	5 cut(s)	157, 225, 292, 472, 600
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	2 cut(s)	185, 424
BseLI	CCNNNNNNNGG	5 cut(s)	157, 225, 292, 472, 600
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	3 cut(s)	98, 295, 570
BsiHKAI	GWGCWC	2 cut(s)	81, 567
BsiSI	CCGG	2 cut(s)	337, 568
BslI	CCNNNNNNNGG	5 cut(s)	157, 225, 292, 472, 600
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	441
Bsp1286I	GDGCHC	2 cut(s)	81, 567
Bsp143I	GATC	2 cut(s)	31, 631
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	5 cut(s)	117, 340, 353, 430, 461
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	100, 297, 572
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	1 cut(s)	626
BspT107I	GGYRCC	3 cut(s)	98, 295, 570
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	2 cut(s)	31, 631
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	244, 374
BstF5I	GGATG	2 cut(s)	185, 424
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	2 cut(s)	34, 634
BstMBI	GATC	2 cut(s)	31, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 337, 370, 438, 562
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	185, 424
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	556
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	427, 463
Csp6I	GTAC	2 cut(s)	140, 571
CviAII	CATG	1 cut(s)	318
CviQI	GTAC	2 cut(s)	140, 571
DdeI	CTNAG	2 cut(s)	244, 374
DpnI	GATC	2 cut(s)	33, 633
DpnII	GATC	2 cut(s)	31, 631
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	436
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	427, 463
Eco53kI	GAGCTC	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	1 cut(s)	321
FaiI	YATR	5 cut(s)	8, 289, 319, 558, 616
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	1 cut(s)	317
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	2 cut(s)	192, 431
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	2 cut(s)	337, 568
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HpaII	CCGG	2 cut(s)	337, 568
HphI	GGTGA	6 cut(s)	42, 131, 265, 326, 367, 545
Hpy166II	GTNNAC	2 cut(s)	69, 142
Hpy188I	TCNGA	2 cut(s)	247, 644
Hpy8I	GTNNAC	2 cut(s)	69, 142
HpyAV	CCTTC	3 cut(s)	20, 112, 487
HpyCH4IV	ACGT	3 cut(s)	71, 291, 323
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 337, 370, 438, 562
HpyF3I	CTNAG	2 cut(s)	244, 374
HpySE526I	ACGT	3 cut(s)	71, 291, 323
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	1 cut(s)	554
KpnI	GGTACC	1 cut(s)	574
Kzo9I	GATC	2 cut(s)	31, 631
LmnI	GCTCC	5 cut(s)	76, 160, 328, 562, 570
LpnPI	CCDG	7 cut(s)	158, 162, 185, 350, 513, 570, 581
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	3 cut(s)	71, 291, 323
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	33, 633
MboI	GATC	2 cut(s)	31, 631
MboII	GAAGA	3 cut(s)	39, 548, 551
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	81, 567
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	3 cut(s)	54, 115, 306
MnlI	CCTC	7 cut(s)	271, 309, 343, 415, 418, 452, 645
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	2 cut(s)	316, 452
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	2 cut(s)	337, 568
MspR9I	CCNGG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	229, 337, 370, 438, 562
NdeII	GATC	2 cut(s)	31, 631
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	3 cut(s)	100, 297, 572
NmuCI	GTSAC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PctI	GAATGC	1 cut(s)	609
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	100, 297, 572
PspPI	GGNCC	2 cut(s)	427, 463
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	2 cut(s)	141, 572
RsaNI	GTAC	2 cut(s)	140, 571
RseI	CAYNNNNRTG	2 cut(s)	316, 452
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	2 cut(s)	31, 631
Sau96I	GGNCC	2 cut(s)	427, 463
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	81, 567
SfaNI	GCATC	1 cut(s)	340
SgrAI	CRCCGGYG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	427, 463
SmiMI	CAYNNNNRTG	2 cut(s)	316, 452
Sse9I	AATT	1 cut(s)	510
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	5 cut(s)	117, 340, 353, 430, 461
SspMI	CTAG	1 cut(s)	551
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	436
TaiI	ACGT	3 cut(s)	74, 294, 326
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 94
TspGWI	ACGGA	1 cut(s)	616
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	2 cut(s)	427, 463
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.