Rh1DG326400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000751
Physical Location & Seq
Forward (+)
55132652 .. 55133646
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG326400.1

Sequence Viewer

Length: 819 bp
ATGGAAGTCACTGACGGAGATCACCAAACCAGAAGAGACCCTTTGATCATAGGGTGGACGCTGGAGCACCACAAGCAGTTTTTAGAGTCGGTGGTGCGCAACGGTGGTTTTAACAAACCCTCAATTACTCCAATAGTAGTGGTGGACGTGCTGAACAAGGTCAACGGTCTTCGCCCGTATCCTATTGTGTACCACATGTTCTGGTTCCGAAAATTCCACAAAGAGAATGAATCCCTATTCAAGAAGTTGCCTGAGTTTGATTCTTTGGTGAGAGATTTTGCAGGCCTAGGCGTGGAAGGAGCAAAGTGCTGGTCGTCATGGACAGTAGAGCATTACAAGGAGGTGGTGGAGGCTATTATACAGCTGGGTGGCCTAGGCAACGCAACACCAGCGAAGCTCCTGGAGTTGGTGGACCGCCGCCTTGGCCTCACAGTAGAGATTCTAGAGCACATACTTTCGAGGTTGGAAACTTTGCAGGAAAGAACTCAAGAAGCTACGTATGGCCACGGCGGTCCACTGCGGCCAGGCAGGCAGAGAGTGAGTGGTAATGTAGTTCATCCTTACACTCGAGAGAAAATAATAAGAGATGAATCTACGAAACTAGCCACTATTCTCAAATCAAAAGTAGATGAAACAATCATGAGCCTCCGGCAACTCACAAGAAAACAAAGAATGGAATATTTGGAGGCAAAAGCAAGAGCAACAAGAGCAGAAAGAATGGAATATTTGGTGACAAGAGCAGCAAGAAGAATGGAAAATTTGGTGACAAAAATGGATCATATAAATTTGGGTCGATCCGGAAGTGAATCGAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.27

Weight (kDa)

9.51

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 797
AciI CCGC 4 cut(s) 415, 418, 510, 520
AclWI GGATC 2 cut(s) 783, 789
AcoI YGGCCR 2 cut(s) 502, 521
AcsI RAATTY 3 cut(s) 212, 757, 784
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 292, 406
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 1 cut(s) 241
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 2 cut(s) 399, 523
AluBI AGCT 3 cut(s) 364, 397, 494
AluI AGCT 3 cut(s) 364, 397, 494
Alw21I GWGCWC 2 cut(s) 69, 450
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 2 cut(s) 783, 789
Ama87I CYCGRG 1 cut(s) 567
Aor13HI TCCGGA 1 cut(s) 797
AoxI GGCC 5 cut(s) 283, 370, 424, 502, 521
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 3 cut(s) 212, 757, 784
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspA2I CCTAGG 2 cut(s) 286, 373
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 412, 512
AsuHPI GGTGA 4 cut(s) 14, 280, 742, 775
AvaI CYCGRG 1 cut(s) 567
AvaII GGWCC 2 cut(s) 412, 512
AvrII CCTAGG 2 cut(s) 286, 373
BalI TGGCCA 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 69, 450
BbvI GCAGC 1 cut(s) 752
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 2 cut(s) 401, 525
BciVI GTATCC 1 cut(s) 189
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 4 cut(s) 287, 374, 443, 602
BfuI GTATCC 1 cut(s) 189
BglI GCCNNNNNGGC 2 cut(s) 423, 529
BisI GCNGC 3 cut(s) 418, 521, 741
BlnI CCTAGG 2 cut(s) 286, 373
BlsI GCNGC 3 cut(s) 419, 522, 742
Bme1390I CCNGG 2 cut(s) 401, 525
Bme18I GGWCC 2 cut(s) 412, 512
BmeT110I CYCGRG 1 cut(s) 567
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 412, 512
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 2 cut(s) 401, 525
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 2 cut(s) 83, 422
BpuEI CTTGAG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 286, 373, 421, 505
BsaWI WCCGGW 1 cut(s) 797
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 406
BseAI TCCGGA 1 cut(s) 797
BseBI CCWGG 2 cut(s) 401, 525
BseDI CCNNGG 4 cut(s) 286, 373, 421, 505
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 2 cut(s) 292, 406
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 752
BseYI CCCAGC 1 cut(s) 364
BshFI GGCC 5 cut(s) 285, 372, 426, 504, 523
BsiHKAI GWGCWC 2 cut(s) 69, 450
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 2 cut(s) 649, 798
BslI CCNNNNNNNGG 2 cut(s) 292, 406
BsmAI GTCTC 1 cut(s) 30
BsnI GGCC 5 cut(s) 285, 372, 426, 504, 523
Bso31I GGTCTC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 69, 450
Bsp13I TCCGGA 1 cut(s) 797
Bsp143I GATC 4 cut(s) 19, 45, 775, 794
BspACI CCGC 4 cut(s) 415, 418, 510, 520
BspANI GGCC 5 cut(s) 285, 372, 426, 504, 523
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 797
BspHI TCATGA 1 cut(s) 639
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 2 cut(s) 783, 789
BspTNI GGTCTC 1 cut(s) 30
BssECI CCNNGG 4 cut(s) 286, 373, 421, 505
BssMI GATC 4 cut(s) 19, 45, 775, 794
BssT1I CCWWGG 3 cut(s) 286, 373, 421
Bst2UI CCWGG 2 cut(s) 401, 525
Bst4CI ACNGT 4 cut(s) 104, 167, 325, 433
Bst6I CTCTTC 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 283, 530
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 22, 48, 778, 797
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 4 cut(s) 19, 45, 775, 794
BstMWI GCNNNNNNNGC 5 cut(s) 73, 389, 423, 529, 707
BstNI CCWGG 2 cut(s) 401, 525
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 399, 523
BstSNI TACGTA 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 752
BstV2I GAAGAC 1 cut(s) 161
BsuI GTATCC 1 cut(s) 189
BsuRI GGCC 5 cut(s) 285, 372, 426, 504, 523
BtgI CCRYGG 1 cut(s) 505
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 556
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 2 cut(s) 9, 515
Cac8I GCNNGC 2 cut(s) 283, 530
CciI TCATGA 1 cut(s) 639
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 412, 512
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 3 cut(s) 196, 318, 640
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 252
DpnI GATC 4 cut(s) 21, 47, 777, 796
DpnII GATC 4 cut(s) 19, 45, 775, 794
EaeI YGGCCR 2 cut(s) 502, 521
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco105I TACGTA 1 cut(s) 498
Eco130I CCWWGG 3 cut(s) 286, 373, 421
Eco147I AGGCCT 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 412, 512
Eco88I CYCGRG 1 cut(s) 567
EcoRII CCWGG 2 cut(s) 399, 523
EcoT14I CCWWGG 3 cut(s) 286, 373, 421
ErhI CCWWGG 3 cut(s) 286, 373, 421
FaeI CATG 3 cut(s) 199, 321, 643
FaiI YATR 9 cut(s) 50, 197, 319, 359, 452, 501, 641, 780, 782
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 3 cut(s) 195, 317, 639
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 418, 521, 741
FokI GGATG 1 cut(s) 543
Fsp4HI GCNGC 3 cut(s) 418, 521, 741
FspBI CTAG 4 cut(s) 287, 374, 443, 602
FspI TGCGCA 1 cut(s) 98
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 418, 521, 741
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 2 cut(s) 83, 422
HaeIII GGCC 5 cut(s) 285, 372, 426, 504, 523
HapII CCGG 2 cut(s) 649, 798
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 99
Hin1II CATG 3 cut(s) 199, 321, 643
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 6 cut(s) 86, 230, 260, 439, 590, 806
HpaII CCGG 2 cut(s) 649, 798
HphI GGTGA 4 cut(s) 14, 280, 742, 775
Hpy166II GTNNAC 6 cut(s) 57, 145, 163, 190, 412, 515
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 6 cut(s) 241, 443, 488, 569, 640, 798
Hpy8I GTNNAC 6 cut(s) 57, 145, 163, 190, 412, 515
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 4 cut(s) 104, 167, 325, 433
HpyCH4IV ACGT 2 cut(s) 147, 497
HpyCH4V TGCA 2 cut(s) 281, 475
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 389, 423, 529, 707
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 2 cut(s) 147, 497
Hsp92II CATG 3 cut(s) 199, 321, 643
HspAI GCGC 1 cut(s) 97
Kpn2I TCCGGA 1 cut(s) 797
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 4 cut(s) 19, 45, 775, 794
LmnI GCTCC 3 cut(s) 64, 299, 402
Lsp1109I GCAGC 1 cut(s) 752
MaeI CTAG 4 cut(s) 287, 374, 443, 602
MaeII ACGT 2 cut(s) 147, 497
MaeIII GTNAC 3 cut(s) 7, 730, 763
MalI GATC 4 cut(s) 21, 47, 777, 796
MboI GATC 4 cut(s) 19, 45, 775, 794
MboII GAAGA 3 cut(s) 45, 161, 759
MhlI GDGCHC 2 cut(s) 69, 450
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 4 cut(s) 123, 212, 757, 784
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 7 cut(s) 130, 334, 343, 437, 453, 656, 679
Mox20I TGGCCA 1 cut(s) 504
MroI TCCGGA 1 cut(s) 797
MscI TGGCCA 1 cut(s) 504
MseI TTAA 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 2 cut(s) 649, 798
MspR9I CCNGG 2 cut(s) 401, 525
MvaI CCWGG 2 cut(s) 401, 525
MwoI GCNNNNNNNGC 5 cut(s) 73, 389, 423, 529, 707
NdeII GATC 4 cut(s) 19, 45, 775, 794
NlaIII CATG 3 cut(s) 199, 321, 643
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 3 cut(s) 7, 730, 763
NsbI TGCGCA 1 cut(s) 98
NspI RCATGY 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 567
PagI TCATGA 1 cut(s) 639
PceI AGGCCT 1 cut(s) 285
PciI ACATGT 1 cut(s) 195
PfeI GAWTC 5 cut(s) 230, 260, 439, 590, 806
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 3 cut(s) 419, 522, 742
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 498
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 399, 523
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 2 cut(s) 399, 523
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 2 cut(s) 412, 512
PsrI GAACNNNNNNTAC 2 cut(s) 182, 214
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 3 cut(s) 418, 521, 741
Sau3AI GATC 4 cut(s) 19, 45, 775, 794
Sau96I GGNCC 2 cut(s) 412, 512
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 401, 525
SduI GDGCHC 2 cut(s) 69, 450
SetI ASST 8 cut(s) 150, 162, 345, 366, 399, 464, 496, 500
Sfr274I CTCGAG 1 cut(s) 567
SinI GGWCC 2 cut(s) 412, 512
SlaI CTCGAG 1 cut(s) 567
SmlI CTYRAG 2 cut(s) 486, 567
SmoI CTYRAG 2 cut(s) 486, 567
SnaBI TACGTA 1 cut(s) 498
Sse9I AATT 4 cut(s) 123, 212, 757, 784
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 4 cut(s) 415, 418, 510, 520
SspI AATATT 2 cut(s) 680, 725
SspMI CTAG 4 cut(s) 287, 374, 443, 602
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 399, 523
StyI CCWWGG 3 cut(s) 286, 373, 421
TaaI ACNGT 4 cut(s) 104, 167, 325, 433
TaiI ACGT 2 cut(s) 150, 500
TaqI TCGA 4 cut(s) 458, 568, 793, 809
TasI AATT 4 cut(s) 123, 212, 757, 784
TauI GCSGC 2 cut(s) 420, 523
TfiI GAWTC 5 cut(s) 230, 260, 439, 590, 806
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 16, 522
TseFI GTSAC 3 cut(s) 7, 730, 763
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 3 cut(s) 7, 730, 763
TspDTI ATGAA 4 cut(s) 243, 545, 603, 645
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 16, 522
VpaK11BI GGWCC 2 cut(s) 412, 512
XapI RAATTY 3 cut(s) 212, 757, 784
XbaI TCTAGA 1 cut(s) 442
XceI RCATGY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 567
XmaJI CCTAGG 2 cut(s) 286, 373
XspI CTAG 4 cut(s) 287, 374, 443, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.