Rroxscaffold_3G00266020

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000751
Physical Location & Seq
Forward (+)
59404892 .. 59406548
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266020.1

Sequence Viewer

Length: 978 bp
ATGTCTCGTTTCGGGGTCGAAGGAGATCGGCGAGCAACAACTTCACCAAGAACGTTCGAGTGGACGTTGGAGCATCACAAGAAGTGTGTTGACACCTTCATCTTTCTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGCGGAGCTGTTGAGCCTGGCAGGGTGTTGTTGTAGAAGCTCTTACCTTGACTTCCACATTTCCTTACTTGGGCTACTACAGAAAAGCTCCGAAGCATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTCATGGACACTGGAGCATCACCGGCGGGTCTTGGAGGCGGTGATACAGCTCGGTGGGCTTAGCAGTAGCAAGACTACCCCAAAGGCCGTGCTGAAGCTGATGGATGAGGAGGACCGGCGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGGGTAATTGCTTTTGGATTGGCTGGTGGTGAAGAAGAAAGACAGCTGGCGCTTAGGGAGCTCCGATACCTTGTTTTTAGAGAATTTCCCCAACTACGGAATATCTTTCTATACACAAATGTAAAAGATCCTCTTCTCCGACAACACCTTGGGCTCCTCAAACAAGTTAATATGTCACACCGGATAAGATTACAGATTATGAAGTCTGAGTGGGAACTGGGAATATTGGGTAGTTTGTCGCCACTCTGGTGGGTTCATTCTGTTATTAGGAAGCTCAACCCAGATGGAAAGGTGAATATGTTGCAAACTTTACACAATCTGAATGAAGATGAGCTTGCCGGTTTTGAAGAAGCATGGAATGGTAATGTTAAGGTGGACATACCTTACAGGAAAGAATTTGATTACTGTGGTGAACGGAAGGGCAATGCATCATGGTCCATGATGGGAAGATGGGAAGATGGGAAGGACATCTGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

325

Amino Acids

37.28

Weight (kDa)

8.8

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 289, 426
AccB7I CCANNNNNTGG 1 cut(s) 466
AciI CCGC 4 cut(s) 111, 152, 334, 347
AclI AACGTT 1 cut(s) 53
AclWI GGATC 1 cut(s) 620
AcsI RAATTY 2 cut(s) 581, 893
AcuI CTGAAG 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 427
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 5 cut(s) 151, 219, 286, 466, 594
AgsI TTSAA 2 cut(s) 275, 845
AjnI CCWGG 1 cut(s) 165
AleI CACNNNNGTG 1 cut(s) 745
AluBI AGCT 9 cut(s) 157, 189, 237, 358, 406, 544, 559, 772, 832
AluI AGCT 9 cut(s) 157, 189, 237, 358, 406, 544, 559, 772, 832
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 620
AoxI GGCC 2 cut(s) 393, 433
ApoI RAATTY 2 cut(s) 581, 893
AspLEI GCGC 3 cut(s) 429, 457, 550
AspS9I GGNCC 2 cut(s) 421, 933
AsuHPI GGTGA 9 cut(s) 36, 125, 259, 320, 361, 430, 539, 802, 920
AvaII GGWCC 2 cut(s) 421, 933
BanI GGYRCC 2 cut(s) 289, 426
BanII GRGCYC 2 cut(s) 561, 654
Bbv12I GWGCWC 1 cut(s) 561
BccI CCATC 5 cut(s) 403, 776, 934, 942, 950
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 227, 970
BfoI RGCGCY 2 cut(s) 430, 551
BglI GCCNNNNNGGC 1 cut(s) 149
BlpI GCTNAGC 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 2 cut(s) 421, 933
BmgT120I GGNCC 2 cut(s) 421, 933
BmiI GGNNCC 3 cut(s) 291, 428, 653
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 725
BmsI GCATC 3 cut(s) 82, 334, 935
BmuI ACTGGG 1 cut(s) 725
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 427
BsaJI CCNNGG 2 cut(s) 430, 646
BsaWI WCCGGW 1 cut(s) 678
Bsc4I CCNNNNNNNGG 5 cut(s) 151, 219, 286, 466, 594
Bse118I RCCGGY 3 cut(s) 330, 423, 836
Bse1I ACTGG 2 cut(s) 324, 720
Bse3DI GCAATG 1 cut(s) 928
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 430, 646
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 5 cut(s) 151, 219, 286, 466, 594
BseMI GCAATG 1 cut(s) 928
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 2 cut(s) 324, 720
BseRI GAGGAG 2 cut(s) 431, 644
BshFI GGCC 2 cut(s) 395, 435
BshNI GGYRCC 2 cut(s) 289, 426
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 4 cut(s) 331, 424, 679, 837
BslI CCNNNNNNNGG 5 cut(s) 151, 219, 286, 466, 594
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 395, 435
Bsp1286I GDGCHC 2 cut(s) 561, 654
Bsp143I GATC 2 cut(s) 25, 625
Bsp1720I GCTNAGC 1 cut(s) 368
BspACI CCGC 4 cut(s) 111, 152, 334, 347
BspANI GGCC 2 cut(s) 395, 435
BspCNI CTCAG 1 cut(s) 697
BspLI GGNNCC 3 cut(s) 291, 428, 653
BspPI GGATC 1 cut(s) 620
BspT107I GGYRCC 2 cut(s) 289, 426
BsrDI GCAATG 1 cut(s) 928
BsrFI RCCGGY 3 cut(s) 330, 423, 836
BsrI ACTGG 2 cut(s) 324, 720
BssAI RCCGGY 3 cut(s) 330, 423, 836
BssECI CCNNGG 2 cut(s) 430, 646
BssMI GATC 2 cut(s) 25, 625
BssNI GRCGYC 1 cut(s) 427
BssT1I CCWWGG 2 cut(s) 430, 646
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 905
Bst6I CTCTTC 1 cut(s) 636
BstACI GRCGYC 1 cut(s) 427
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 3 cut(s) 33, 546, 834
BstDEI CTNAG 3 cut(s) 368, 551, 705
BstF5I GGATG 1 cut(s) 418
BstH2I RGCGCY 2 cut(s) 430, 551
BstHHI GCGC 3 cut(s) 429, 457, 550
BstKTI GATC 2 cut(s) 28, 628
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 25, 625
BstMWI GCNNNNNNNGC 4 cut(s) 149, 331, 364, 556
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 2 cut(s) 227, 970
BstX2I RGATCY 1 cut(s) 625
BstXI CCANNNNNNTGG 1 cut(s) 747
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 2 cut(s) 395, 435
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 3 cut(s) 33, 546, 834
CfoI GCGC 3 cut(s) 429, 457, 550
Cfr10I RCCGGY 3 cut(s) 330, 423, 836
Cfr13I GGNCC 2 cut(s) 421, 933
Csp6I GTAC 1 cut(s) 134
CviAII CATG 4 cut(s) 312, 852, 930, 937
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 3 cut(s) 368, 551, 705
DinI GGCGCC 1 cut(s) 428
DpnI GATC 2 cut(s) 27, 627
DpnII GATC 2 cut(s) 25, 625
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 559
Eco130I CCWWGG 2 cut(s) 430, 646
Eco147I AGGCCT 1 cut(s) 435
Eco24I GRGCYC 2 cut(s) 561, 654
Eco47I GGWCC 2 cut(s) 421, 933
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 430, 646
EcoT22I ATGCAT 1 cut(s) 928
EcoT38I GRGCYC 2 cut(s) 561, 654
EgeI GGCGCC 1 cut(s) 428
EheI GGCGCC 1 cut(s) 428
ErhI CCWWGG 2 cut(s) 430, 646
FaeI CATG 4 cut(s) 315, 855, 933, 940
FalI AAGNNNNNCTT 6 cut(s) 255, 287, 615, 647, 816, 848
FatI CATG 4 cut(s) 311, 851, 929, 936
FauI CCCGC 1 cut(s) 327
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 2 cut(s) 561, 654
GlaI GCGC 3 cut(s) 428, 456, 549
GsuI CTGGAG 1 cut(s) 341
HaeII RGCGCY 2 cut(s) 430, 551
HaeIII GGCC 2 cut(s) 395, 435
HapII CCGG 4 cut(s) 331, 424, 679, 837
HhaI GCGC 3 cut(s) 429, 457, 550
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 4 cut(s) 315, 855, 933, 940
Hin6I GCGC 3 cut(s) 427, 455, 548
HinP1I GCGC 3 cut(s) 427, 455, 548
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HpaII CCGG 4 cut(s) 331, 424, 679, 837
HphI GGTGA 9 cut(s) 36, 125, 259, 320, 361, 430, 539, 802, 920
Hpy166II GTNNAC 5 cut(s) 63, 91, 136, 874, 911
Hpy188I TCNGA 5 cut(s) 241, 563, 638, 706, 819
Hpy8I GTNNAC 5 cut(s) 63, 91, 136, 874, 911
HpyAV CCTTC 5 cut(s) 14, 106, 481, 910, 955
HpyCH4III ACNGT 1 cut(s) 905
HpyCH4IV ACGT 3 cut(s) 53, 65, 285
HpyCH4V TGCA 3 cut(s) 484, 802, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 331, 364, 556
HpyF3I CTNAG 3 cut(s) 368, 551, 705
HpySE526I ACGT 3 cut(s) 53, 65, 285
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 4 cut(s) 315, 855, 933, 940
HspAI GCGC 3 cut(s) 427, 455, 548
KasI GGCGCC 1 cut(s) 426
Kzo9I GATC 2 cut(s) 25, 625
LmnI GCTCC 7 cut(s) 70, 154, 242, 322, 556, 564, 657
LweI GCATC 3 cut(s) 82, 334, 935
MaeII ACGT 3 cut(s) 53, 65, 285
MaeIII GTNAC 2 cut(s) 265, 672
MalI GATC 2 cut(s) 27, 627
MboI GATC 2 cut(s) 25, 625
MboII GAAGA 7 cut(s) 542, 545, 623, 836, 857, 957, 965
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 2 cut(s) 561, 654
MluCI AATT 3 cut(s) 504, 581, 893
Mly113I GGCGCC 1 cut(s) 427
MmeI TCCRAC 3 cut(s) 48, 109, 661
MnlI CCTC 8 cut(s) 265, 303, 337, 409, 412, 446, 639, 665
Mph1103I ATGCAT 1 cut(s) 928
MseI TTAA 2 cut(s) 666, 867
MslI CAYNNNNRTG 3 cut(s) 310, 446, 745
MspA1I CMGCKG 1 cut(s) 544
MspI CCGG 4 cut(s) 331, 424, 679, 837
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 149, 331, 364, 556
NarI GGCGCC 1 cut(s) 427
NdeII GATC 2 cut(s) 25, 625
NlaIII CATG 4 cut(s) 315, 855, 933, 940
NlaIV GGNNCC 3 cut(s) 291, 428, 653
NmuCI GTSAC 2 cut(s) 265, 672
NsiI ATGCAT 1 cut(s) 928
OliI CACNNNNGTG 1 cut(s) 745
PceI AGGCCT 1 cut(s) 435
PflMI CCANNNNNTGG 1 cut(s) 466
PluTI GGCGCC 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 561
Psp1406I AACGTT 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 291, 428, 653
PspPI GGNCC 2 cut(s) 421, 933
PsuI RGATCY 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 544
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 3 cut(s) 310, 446, 745
SacI GAGCTC 1 cut(s) 561
SaqAI TTAA 2 cut(s) 666, 867
Sau3AI GATC 2 cut(s) 25, 625
Sau96I GGNCC 2 cut(s) 421, 933
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 561, 654
SfaNI GCATC 3 cut(s) 82, 334, 935
SfcI CTRYAG 2 cut(s) 227, 970
SfoI GGCGCC 1 cut(s) 428
SgrAI CRCCGGYG 1 cut(s) 330
SinI GGWCC 2 cut(s) 421, 933
SmiMI CAYNNNNRTG 3 cut(s) 310, 446, 745
Sse9I AATT 3 cut(s) 504, 581, 893
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 4 cut(s) 111, 152, 334, 347
SspDI GGCGCC 1 cut(s) 426
SspI AATATT 1 cut(s) 723
SstI GAGCTC 1 cut(s) 561
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 430, 646
TaaI ACNGT 1 cut(s) 905
TaiI ACGT 3 cut(s) 56, 68, 288
TaqI TCGA 2 cut(s) 18, 57
TasI AATT 3 cut(s) 504, 581, 893
TatI WGTACW 1 cut(s) 133
Tru1I TTAA 2 cut(s) 666, 867
Tru9I TTAA 2 cut(s) 666, 867
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 2 cut(s) 265, 672
Tsp45I GTSAC 2 cut(s) 265, 672
TspDTI ATGAA 4 cut(s) 88, 713, 743, 837
TspGWI ACGGA 2 cut(s) 610, 928
TspRI CASTG 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 2 cut(s) 421, 933
XapI RAATTY 2 cut(s) 581, 893
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.