Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Reverse (-)

11350516 .. 11352918

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTCCAAGTCGGAGTCATGGGAAATCGGAAAAACGTTCCACAAACAATAGAGTGGACAATAGAGCACCACAAGCTCTTCGTGGACCTGCTGCTCCAGTCCGGCGGTTTCGAGAAAGTTCGCGCGTTCATACTAAGGAGGATGATGAAGACAGTGAAGGGTCTTACATGGTCAGCTGCGTTAGATCATTCTCGCCAGTTGGAACAACTACAGAAGCAAACTCAATCAGTTCTATTACGTCGTCCACCCCGAAAACCTTCTTGTAAACTCAGTGTTTTGGCGGACGATTTGGTGAGAGACTTGGAGGGTCTAATCATGGAACGTAAGCTGTCAACGTGGACACTCGAGCATCACAAGCGTGTGGTGGATGCTTTGGCAAAGGTGGGTGGCCTTGACATGGCAAACCCCATGGAGAAGACGGCGGTTAGGGTTTTGAGACTGATGGAAGAAGAGCGCCGCCAGGGTCTCACCGCACGGATGGTAACGAAGCATCTGATGGGGTTGCGCTATTTACAGAGGAGAACTCAGGAGGCCATTGTTAAAGCGGCAGAGAATAAAGCTAAACATGGCTGCAGCGTCAGGAGGCCCAAAAAAGTGAAGGTTTTGCCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

23.5

Weight (kDa)

10.65

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccII	CGCG	2 cut(s)	123, 125
AciI	CCGC	6 cut(s)	105, 281, 422, 457, 471, 545
AclI	AACGTT	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	459
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	4 cut(s)	76, 176, 328, 560
AluI	AGCT	4 cut(s)	76, 176, 328, 560
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	3 cut(s)	291, 430, 470
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	3 cut(s)	388, 531, 584
ApeKI	GCWGC	4 cut(s)	91, 176, 570, 573
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	3 cut(s)	125, 456, 507
AspS9I	GGNCC	3 cut(s)	4, 85, 585
AsuHPI	GGTGA	2 cut(s)	304, 460
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	4, 85
BbsI	GAAGAC	2 cut(s)	155, 422
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	78, 163, 557, 585
BccI	CCATC	3 cut(s)	436, 472, 490
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	3 cut(s)	291, 430, 470
BfmI	CTRYAG	2 cut(s)	209, 571
BfoI	RGCGCY	1 cut(s)	457
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	6 cut(s)	92, 177, 457, 546, 571, 574
BlsI	GCNGC	6 cut(s)	93, 178, 458, 547, 572, 575
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	4, 85
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	4, 85, 585
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	358, 358, 499
BpiI	GAAGAC	2 cut(s)	155, 422
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpmI	CTGGAG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	408, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse1I	ACTGG	2 cut(s)	97, 196
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	408, 460
BseGI	GGATG	3 cut(s)	147, 373, 483
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	283, 539
BseNI	ACTGG	2 cut(s)	97, 196
BseRI	GAGGAG	1 cut(s)	532
BseXI	GCAGC	4 cut(s)	78, 163, 557, 585
Bsh1236I	CGCG	2 cut(s)	123, 125
BshFI	GGCC	3 cut(s)	390, 533, 586
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	3 cut(s)	291, 430, 470
BsnI	GGCC	3 cut(s)	390, 533, 586
Bso31I	GGTCTC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	184
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	6 cut(s)	105, 281, 422, 457, 471, 545
BspANI	GGCC	3 cut(s)	390, 533, 586
BspCNI	CTCAG	2 cut(s)	282, 538
BspFNI	CGCG	2 cut(s)	123, 125
BspMAI	CTGCAG	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	96
BspQI	GCTCTTC	2 cut(s)	83, 444
BspTNI	GGTCTC	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	97, 196
BssECI	CCNNGG	2 cut(s)	408, 460
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	2 cut(s)	83, 444
BstDEI	CTNAG	3 cut(s)	134, 269, 525
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	147, 373, 483
BstFNI	CGCG	2 cut(s)	123, 125
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	3 cut(s)	125, 456, 507
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	3 cut(s)	291, 430, 470
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 355
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	2 cut(s)	209, 571
BstUI	CGCG	2 cut(s)	123, 125
BstV1I	GCAGC	4 cut(s)	78, 163, 557, 585
BstV2I	GAAGAC	2 cut(s)	155, 422
BsuRI	GGCC	3 cut(s)	390, 533, 586
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	147, 373, 483
BtsIMutI	CAGTG	2 cut(s)	159, 277
BveI	ACCTGC	1 cut(s)	96
CfoI	GCGC	3 cut(s)	125, 456, 507
Cfr13I	GGNCC	3 cut(s)	4, 85, 585
CseI	GACGC	1 cut(s)	565
CviAII	CATG	6 cut(s)	19, 168, 316, 397, 409, 566
CviJI	RGCY	8 cut(s)	76, 176, 328, 390, 533, 560, 570, 586
CviKI_1	RGCY	8 cut(s)	76, 176, 328, 390, 533, 560, 570, 586
DdeI	CTNAG	3 cut(s)	134, 269, 525
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	2 cut(s)	83, 444
EarI	CTCTTC	2 cut(s)	83, 444
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	4, 85
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	6 cut(s)	22, 171, 319, 400, 412, 569
FaiI	YATR	7 cut(s)	20, 131, 169, 317, 398, 410, 567
FatI	CATG	6 cut(s)	18, 167, 315, 396, 408, 565
Fnu4HI	GCNGC	6 cut(s)	92, 177, 457, 546, 571, 574
FokI	GGATG	3 cut(s)	154, 380, 490
Fsp4HI	GCNGC	6 cut(s)	92, 177, 457, 546, 571, 574
GlaI	GCGC	3 cut(s)	124, 455, 506
GluI	GCNGC	6 cut(s)	92, 177, 457, 546, 571, 574
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	3 cut(s)	390, 533, 586
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	3 cut(s)	125, 456, 507
Hin1II	CATG	6 cut(s)	22, 171, 319, 400, 412, 569
Hin6I	GCGC	3 cut(s)	123, 454, 505
HinP1I	GCGC	3 cut(s)	123, 454, 505
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	304, 460
Hpy166II	GTNNAC	6 cut(s)	57, 85, 245, 266, 333, 339
Hpy188I	TCNGA	3 cut(s)	14, 30, 495
Hpy188III	TCNNGA	3 cut(s)	112, 527, 580
Hpy8I	GTNNAC	6 cut(s)	57, 85, 245, 266, 333, 339
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	151, 267, 592
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	4 cut(s)	36, 238, 322, 335
HpyCH4V	TGCA	1 cut(s)	573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 355
HpyF3I	CTNAG	3 cut(s)	134, 269, 525
HpySE526I	ACGT	4 cut(s)	36, 238, 322, 335
Hsp92II	CATG	6 cut(s)	22, 171, 319, 400, 412, 569
HspAI	GCGC	3 cut(s)	123, 454, 505
Kzo9I	GATC	1 cut(s)	184
LguI	GCTCTTC	2 cut(s)	83, 444
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	8 cut(s)	101, 110, 115, 209, 446, 473, 512, 565
Lsp1109I	GCAGC	4 cut(s)	78, 163, 557, 585
LweI	GCATC	3 cut(s)	358, 358, 499
MaeII	ACGT	4 cut(s)	36, 238, 322, 335
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	5 cut(s)	70, 160, 427, 458, 461
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	132, 298, 510, 523, 576
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	2 cut(s)	123, 125
MwoI	GCNNNNNNNGC	2 cut(s)	73, 355
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	6 cut(s)	22, 171, 319, 400, 412, 569
OliI	CACNNNNGTG	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	344
PciSI	GCTCTTC	2 cut(s)	83, 444
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	256
PkrI	GCNGC	6 cut(s)	93, 178, 458, 547, 572, 575
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspPI	GGNCC	3 cut(s)	4, 85, 585
PspXI	VCTCGAGB	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	575
PvuII	CAGCTG	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	357
SapI	GCTCTTC	2 cut(s)	83, 444
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	6 cut(s)	92, 177, 457, 546, 571, 574
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	3 cut(s)	4, 85, 585
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	3 cut(s)	358, 358, 499
SfcI	CTRYAG	2 cut(s)	209, 571
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	4, 85
SlaI	CTCGAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SsiI	CCGC	6 cut(s)	105, 281, 422, 457, 471, 545
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	4 cut(s)	39, 241, 325, 338
TaqI	TCGA	2 cut(s)	111, 345
TauI	GCSGC	2 cut(s)	459, 548
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	2 cut(s)	159, 277
TseI	GCWGC	4 cut(s)	91, 176, 570, 573
TspDTI	ATGAA	2 cut(s)	118, 161
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	2 cut(s)	159, 277
VpaK11BI	GGWCC	2 cut(s)	4, 85
XhoI	CTCGAG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.