Rh3CG287000
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000751
Physical Location & Seq
Reverse (-)
29027085 .. 29027774
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG287000.1

Sequence Viewer

Length: 690 bp
ATGAACATATCTTGCTTCGGGGTCGAAGGAGATCGGCAAGAAACATCTTCACCAAAAATGTTTGAGTGGACGTTGGAGCACCACAAGAAGTGTGTTGACACCTTCATCTTGTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGTGGAGTTGCTGAGCCTGGCAGGATGTTGTTGTAGAAGTTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTGCTACAAAAAAGCTCCGACGTATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTCATGGACGTTGGAGCATCACCGGCGGGTTGTGGAGGCGGTGATACAGCTCGGTGGGCTTAGCAGTAGCAAGACTACCCCAAAGGCTGTGCTGAAGCTGATGGATGAGGAGGACCGCTGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGACTAATTACTTTTGGATTGGCTGGTGGTGAAGAAGAAAGAGAGCTAGCGCGTAGGGAGCTCCGGTACCTTGTTTTTACTGGATTGCCCCAACAACGGAATAGAATTCTATACACAAAGTTAAAAGGTCCTCTACTCAGACAACACCTAGGGCTCCTCAAACAAGTTAATATTGTTGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

229

Amino Acids

25.94

Weight (kDa)

8.86

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 570
AccB1I GGYRCC 2 cut(s) 295, 570
AccB7I CCANNNNNTGG 1 cut(s) 472
AccII CGCG 1 cut(s) 556
AciI CCGC 4 cut(s) 117, 340, 353, 430
AcsI RAATTY 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 2 cut(s) 141, 572
AfiI CCNNNNNNNGG 5 cut(s) 157, 225, 292, 472, 600
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 5 cut(s) 243, 364, 412, 550, 565
AluI AGCT 5 cut(s) 243, 364, 412, 550, 565
Alw21I GWGCWC 2 cut(s) 81, 567
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 432
ApoI RAATTY 1 cut(s) 609
Asp718I GGTACC 1 cut(s) 570
AspA2I CCTAGG 1 cut(s) 652
AspLEI GCGC 2 cut(s) 463, 556
AspS9I GGNCC 2 cut(s) 427, 632
AsuHPI GGTGA 7 cut(s) 42, 131, 265, 326, 367, 436, 545
AsuNHI GCTAGC 1 cut(s) 550
AvaII GGWCC 2 cut(s) 427, 632
AvrII CCTAGG 1 cut(s) 652
BanI GGYRCC 2 cut(s) 295, 570
BanII GRGCYC 2 cut(s) 567, 660
Bbv12I GWGCWC 2 cut(s) 81, 567
BbvI GCAGC 1 cut(s) 419
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 2 cut(s) 551, 653
BisI GCNGC 1 cut(s) 433
BlnI CCTAGG 1 cut(s) 652
BlpI GCTNAGC 2 cut(s) 167, 374
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 2 cut(s) 427, 632
BmgT120I GGNCC 2 cut(s) 427, 632
BmiI GGNNCC 3 cut(s) 297, 572, 659
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 340
BmtI GCTAGC 1 cut(s) 554
Bpu1102I GCTNAGC 2 cut(s) 167, 374
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 436, 652
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 225, 292, 472, 600
Bse118I RCCGGY 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 589
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 436, 652
BseGI GGATG 2 cut(s) 185, 424
BseLI CCNNNNNNNGG 5 cut(s) 157, 225, 292, 472, 600
BseMII CTCAG 2 cut(s) 158, 655
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 437, 650
BseXI GCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 556
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 2 cut(s) 295, 570
BsiHKAI GWGCWC 2 cut(s) 81, 567
BsiSI CCGG 2 cut(s) 337, 568
BslI CCNNNNNNNGG 5 cut(s) 157, 225, 292, 472, 600
BsnI GGCC 1 cut(s) 441
Bsp1286I GDGCHC 3 cut(s) 81, 567, 660
Bsp143I GATC 1 cut(s) 31
Bsp1720I GCTNAGC 2 cut(s) 167, 374
BspACI CCGC 4 cut(s) 117, 340, 353, 430
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 159, 654
BspFNI CGCG 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 297, 572, 659
BspOI GCTAGC 1 cut(s) 554
BspT107I GGYRCC 2 cut(s) 295, 570
BsrFI RCCGGY 1 cut(s) 336
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 436, 652
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 2 cut(s) 436, 652
Bst2UI CCWGG 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 3 cut(s) 167, 374, 641
BstF5I GGATG 2 cut(s) 185, 424
BstFNI CGCG 1 cut(s) 556
BstHHI GCGC 2 cut(s) 463, 556
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 5 cut(s) 229, 337, 370, 438, 562
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 1 cut(s) 556
BstV1I GCAGC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 2 cut(s) 185, 424
Cac8I GCNNGC 1 cut(s) 552
CfoI GCGC 2 cut(s) 463, 556
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 427, 632
Csp6I GTAC 2 cut(s) 140, 571
CviAII CATG 1 cut(s) 318
CviQI GTAC 2 cut(s) 140, 571
DdeI CTNAG 3 cut(s) 167, 374, 641
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 436, 652
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 2 cut(s) 567, 660
Eco47I GGWCC 2 cut(s) 427, 632
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 565
EcoO109I RGGNCCY 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 436, 652
EcoT38I GRGCYC 2 cut(s) 567, 660
ErhI CCWWGG 2 cut(s) 436, 652
FaeI CATG 1 cut(s) 321
FaiI YATR 4 cut(s) 8, 289, 319, 616
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 1 cut(s) 317
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 2 cut(s) 192, 431
FriOI GRGCYC 2 cut(s) 567, 660
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 2 cut(s) 551, 653
GlaI GCGC 2 cut(s) 462, 555
GluI GCNGC 1 cut(s) 433
HaeIII GGCC 1 cut(s) 441
HapII CCGG 2 cut(s) 337, 568
HhaI GCGC 2 cut(s) 463, 556
Hin1II CATG 1 cut(s) 321
Hin6I GCGC 2 cut(s) 461, 554
HinP1I GCGC 2 cut(s) 461, 554
HincII GTYRAC 2 cut(s) 97, 682
HindII GTYRAC 2 cut(s) 97, 682
HpaII CCGG 2 cut(s) 337, 568
HphI GGTGA 7 cut(s) 42, 131, 265, 326, 367, 436, 545
Hpy166II GTNNAC 4 cut(s) 69, 97, 142, 682
Hpy188I TCNGA 2 cut(s) 247, 644
Hpy8I GTNNAC 4 cut(s) 69, 97, 142, 682
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 20, 112, 487
HpyCH4IV ACGT 4 cut(s) 71, 249, 291, 323
HpyCH4V TGCA 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 229, 337, 370, 438, 562
HpyF3I CTNAG 3 cut(s) 167, 374, 641
HpySE526I ACGT 4 cut(s) 71, 249, 291, 323
Hsp92II CATG 1 cut(s) 321
HspAI GCGC 2 cut(s) 461, 554
KpnI GGTACC 1 cut(s) 574
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 6 cut(s) 76, 248, 328, 562, 570, 663
LpnPI CCDG 7 cut(s) 158, 162, 185, 350, 513, 570, 581
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 551, 653
MaeII ACGT 4 cut(s) 71, 249, 291, 323
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 3 cut(s) 39, 548, 551
MhlI GDGCHC 3 cut(s) 81, 567, 660
MluCI AATT 2 cut(s) 510, 609
MmeI TCCRAC 4 cut(s) 54, 115, 270, 306
MnlI CCTC 8 cut(s) 271, 309, 343, 415, 418, 452, 645, 671
MseI TTAA 2 cut(s) 626, 672
MslI CAYNNNNRTG 2 cut(s) 316, 452
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 2 cut(s) 337, 568
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 556
MwoI GCNNNNNNNGC 5 cut(s) 229, 337, 370, 438, 562
NdeII GATC 1 cut(s) 31
NheI GCTAGC 1 cut(s) 550
NlaIII CATG 1 cut(s) 321
NlaIV GGNNCC 3 cut(s) 297, 572, 659
NmuCI GTSAC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 472
PkrI GCNGC 1 cut(s) 434
Ppu21I YACGTR 1 cut(s) 292
PpuMI RGGWCCY 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 3 cut(s) 297, 572, 659
PspPI GGNCC 2 cut(s) 427, 632
PspPPI RGGWCCY 1 cut(s) 632
RsaI GTAC 2 cut(s) 141, 572
RsaNI GTAC 2 cut(s) 140, 571
RseI CAYNNNNRTG 2 cut(s) 316, 452
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 2 cut(s) 626, 672
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 427, 632
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 3 cut(s) 81, 567, 660
SfaNI GCATC 1 cut(s) 340
SgrAI CRCCGGYG 1 cut(s) 336
SinI GGWCC 2 cut(s) 427, 632
SmiMI CAYNNNNRTG 2 cut(s) 316, 452
Sse9I AATT 2 cut(s) 510, 609
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 4 cut(s) 117, 340, 353, 430
SspI AATATT 1 cut(s) 676
SspMI CTAG 2 cut(s) 551, 653
SstI GAGCTC 1 cut(s) 567
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 2 cut(s) 436, 652
TaiI ACGT 4 cut(s) 74, 252, 294, 326
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 510, 609
TatI WGTACW 1 cut(s) 139
Tru1I TTAA 2 cut(s) 626, 672
Tru9I TTAA 2 cut(s) 626, 672
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 17, 94
TspGWI ACGGA 1 cut(s) 616
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 427, 632
XapI RAATTY 1 cut(s) 609
XmaJI CCTAGG 1 cut(s) 652
XspI CTAG 2 cut(s) 551, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.