Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

25448547 .. 25449570

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATGGAAGTGGACGGAGAAAATCATGATGAGGGTTTGGAAAGAAATTACCAGAGGAGGCCACAAACACGAAGAAGAAGTAGGGTGGAAGCAATCGAGTGGACGCTGGAGCACCACAAGCAATTCGTGGACACCATGAACCGGTTATATTTGGGAGATCTCACAGTTCGTACACCCAGGAGGGCGATCCTGATTGTGGAGCTCATGAACAACGAGGCCTTGAGGCTTATTCCCCGCTCAACTCTCTTGCACCACATCGGCCTCTTTCAGCGTTTTCAGAGTAATCAGAAAGCCAATGCTCACAGTGTTTTGACGAGAGACTTTGAACGGCTTAACATTAATAAGGAGGAGAAGCAGGACTTGTCGTTTTCATGGACACCGGTGTATCACGAGGACTTGGTGGAGGCAGTGATCCAGTTGGGTGGGCTTGGAAAGGCAACCGCAAAGGGCATTCTGAAGCTGCTAGAGAACCACCGTGGCCTCACCGTCGAGGCAGTGTCGTACCATCTCTTCAGGTTAAAGGATTTACAGAAAATGACTCAAACATTTCAAGAAAAAATCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

189

Amino Acids

22.16

Weight (kDa)

9.22

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	237
AciI	CCGC	2 cut(s)	235, 441
AclWI	GGATC	2 cut(s)	181, 406
AcuI	CTGAAG	2 cut(s)	476, 496
AfaI	GTAC	2 cut(s)	172, 503
AfiI	CCNNNNNNNGG	2 cut(s)	141, 196
AgeI	ACCGGT	2 cut(s)	141, 379
AgsI	TTSAA	2 cut(s)	326, 551
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	202, 460
AluI	AGCT	2 cut(s)	202, 460
Alw21I	GWGCWC	2 cut(s)	114, 204
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	181, 406
AoxI	GGCC	4 cut(s)	59, 216, 259, 478
ApeKI	GCWGC	1 cut(s)	460
AseI	ATTAAT	1 cut(s)	339
AsiGI	ACCGGT	2 cut(s)	141, 379
AsuHPI	GGTGA	1 cut(s)	475
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BanII	GRGCYC	1 cut(s)	204
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
BauI	CACGAG	1 cut(s)	389
Bbv12I	GWGCWC	2 cut(s)	114, 204
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	176, 475
BsaWI	WCCGGW	2 cut(s)	141, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 196
Bse118I	RCCGGY	2 cut(s)	141, 379
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	176, 475
BseLI	CCNNNNNNNGG	2 cut(s)	141, 196
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	2 cut(s)	70, 362
BseXI	GCAGC	1 cut(s)	447
BshFI	GGCC	4 cut(s)	61, 218, 261, 480
BshTI	ACCGGT	2 cut(s)	141, 379
BsiHKAI	GWGCWC	2 cut(s)	114, 204
BsiSI	CCGG	2 cut(s)	142, 380
BslI	CCNNNNNNNGG	2 cut(s)	141, 196
BsmAI	GTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	4 cut(s)	61, 218, 261, 480
Bsp1286I	GDGCHC	2 cut(s)	114, 204
Bsp143I	GATC	3 cut(s)	157, 186, 411
BspACI	CCGC	2 cut(s)	235, 441
BspANI	GGCC	4 cut(s)	61, 218, 261, 480
BspHI	TCATGA	2 cut(s)	25, 204
BspPI	GGATC	2 cut(s)	181, 406
BsrBI	CCGCTC	1 cut(s)	237
BsrFI	RCCGGY	2 cut(s)	141, 379
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	2 cut(s)	141, 379
BssECI	CCNNGG	2 cut(s)	176, 475
BssMI	GATC	3 cut(s)	157, 186, 411
BssSI	CACGAG	1 cut(s)	389
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	4 cut(s)	166, 305, 476, 487
Bst6I	CTCTTC	1 cut(s)	515
BstDSI	CCRYGG	1 cut(s)	475
BstKTI	GATC	3 cut(s)	160, 189, 414
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	3 cut(s)	157, 186, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	4 cut(s)	61, 218, 261, 480
BtgI	CCRYGG	1 cut(s)	475
BtsI	GCAGTG	2 cut(s)	414, 501
BtsIMutI	CAGTG	4 cut(s)	310, 414, 501, 562
CciI	TCATGA	2 cut(s)	25, 204
Cfr10I	RCCGGY	2 cut(s)	141, 379
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	171, 502
CspAI	ACCGGT	2 cut(s)	141, 379
CviAII	CATG	4 cut(s)	26, 136, 205, 372
CviQI	GTAC	2 cut(s)	171, 502
DpnI	GATC	3 cut(s)	159, 188, 413
DpnII	GATC	3 cut(s)	157, 186, 411
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Ecl136II	GAGCTC	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	476, 496
EcoICRI	GAGCTC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	4 cut(s)	29, 139, 208, 375
FaiI	YATR	5 cut(s)	27, 137, 148, 206, 373
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	4 cut(s)	25, 135, 204, 371
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	461
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	61, 218, 261, 480
HapII	CCGG	2 cut(s)	142, 380
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	29, 139, 208, 375
HinfI	GANTC	1 cut(s)	538
HpaII	CCGG	2 cut(s)	142, 380
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	4 cut(s)	13, 102, 130, 173
Hpy188I	TCNGA	3 cut(s)	279, 288, 456
Hpy188III	TCNNGA	5 cut(s)	26, 190, 205, 389, 551
Hpy8I	GTNNAC	4 cut(s)	13, 102, 130, 173
Hpy99I	CGWCG	1 cut(s)	491
HpyCH4III	ACNGT	4 cut(s)	166, 305, 476, 487
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
Hsp92II	CATG	4 cut(s)	29, 139, 208, 375
Kzo9I	GATC	3 cut(s)	157, 186, 411
LmnI	GCTCC	2 cut(s)	109, 199
Lsp1109I	GCAGC	1 cut(s)	447
MaeI	CTAG	1 cut(s)	464
MalI	GATC	3 cut(s)	159, 188, 413
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	3 cut(s)	157, 186, 411
MboII	GAAGA	3 cut(s)	84, 87, 502
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	114, 204
MluCI	AATT	2 cut(s)	46, 122
MlyI	GAGTC	1 cut(s)	532
MseI	TTAA	3 cut(s)	333, 339, 518
MspI	CCGG	2 cut(s)	142, 380
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeII	GATC	3 cut(s)	157, 186, 411
NlaIII	CATG	4 cut(s)	29, 139, 208, 375
PagI	TCATGA	2 cut(s)	25, 204
PceI	AGGCCT	1 cut(s)	218
PctI	GAATGC	1 cut(s)	450
PinAI	ACCGGT	2 cut(s)	141, 379
PkrI	GCNGC	1 cut(s)	462
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PshBI	ATTAAT	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	172, 503
RsaNI	GTAC	2 cut(s)	171, 502
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	333, 339, 518
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	3 cut(s)	157, 186, 411
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	114, 204
SetI	ASST	3 cut(s)	204, 462, 518
SgrAI	CRCCGGYG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	46, 122
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	235, 441
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	4 cut(s)	166, 305, 476, 487
TaqI	TCGA	2 cut(s)	96, 489
TasI	AATT	2 cut(s)	46, 122
Tru1I	TTAA	3 cut(s)	333, 339, 518
Tru9I	TTAA	3 cut(s)	333, 339, 518
TscAI	CASTG	3 cut(s)	310, 414, 501
TseI	GCWGC	1 cut(s)	460
TspDTI	ATGAA	3 cut(s)	152, 221, 360
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	310, 414, 501
VspI	ATTAAT	1 cut(s)	339
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.