Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Reverse (-)

11346705 .. 11347892

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATGTGGACGGGGATGGTCAAGAACCAATGGAGTGGACGCTGGAGCACCACAAGACGTTTGTGGACATAGTGGTCCGGCTGGGTGGCTTTAACAAAATCGGAACACCGAGGATCGTAGTAGCAGAGATGATGAACAATGTGAAGGGTCTTTCCCAGAGAACCATAGTGCAGCACATGGTTTGGTTTCAGCTAATAAACAAACGAACCCATTTATCATTGGGTCTCAGAACGAGGCCACCGCTGCAACCTTGTTCTGATTCGTACCAAAGTTTGGTGAGCCATTTTGAAGGTCTGCACGTGGCACCTCCTAAGAGGCTGTTGTCATCGTGGACGGTGGAGCATCACAAGCGGGTGGTGGAGGCAGTGACAAAGCTGGGTGGCCTGAGCAAGGCAACCCCGAAGGTGGTTCTGAGGCTGATGGATGAGGAGCGCCGGCAGGGCCTCACCGTAAGAACACTGAGGCTCCATCTTTCAGGTTTGCGGTATCTACAGAAGAAAACTCAGAAGTCTATTCATGAATGTAGCCAAGGCAAGGCGCTGAGAAATATGAAAATTTCTAAGTCACGTATAAGAAACATCATGGCTCAACTATCAACCGCTAGAAATCTATTCACATCCTCTACTCACGTAGGAATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

214

Amino Acids

24.39

Weight (kDa)

10.57

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	304
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	4 cut(s)	242, 352, 484, 600
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	4 cut(s)	274, 391, 406, 535
AgsI	TTSAA	1 cut(s)	290
AluBI	AGCT	2 cut(s)	193, 376
AluI	AGCT	2 cut(s)	193, 376
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	3 cut(s)	236, 382, 442
ApeKI	GCWGC	2 cut(s)	172, 244
ApoI	RAATTY	1 cut(s)	555
AspLEI	GCGC	2 cut(s)	435, 541
AspS9I	GGNCC	2 cut(s)	76, 442
AsuHPI	GGTGA	2 cut(s)	289, 439
AvaII	GGWCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	304
BbrPI	CACGTG	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	184, 231
BccI	CCATC	3 cut(s)	11, 415, 477
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	2 cut(s)	436, 542
BglI	GCCNNNNNGGC	1 cut(s)	441
BisI	GCNGC	2 cut(s)	173, 245
BlsI	GCNGC	2 cut(s)	174, 246
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 442
BmiI	GGNNCC	2 cut(s)	306, 467
BmsI	GCATC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	386
BsaAI	YACGTR	3 cut(s)	301, 569, 631
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	110, 529
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 391, 406, 535
Bse118I	RCCGGY	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	110, 529
BseGI	GGATG	4 cut(s)	10, 22, 430, 617
BseLI	CCNNNNNNNGG	4 cut(s)	274, 391, 406, 535
BseMII	CTCAG	6 cut(s)	241, 377, 404, 452, 518, 533
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	184, 231
BseYI	CCCAGC	2 cut(s)	82, 376
BsgI	GTGCAG	2 cut(s)	191, 281
BshFI	GGCC	3 cut(s)	238, 384, 444
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	79, 436
BslI	CCNNNNNNNGG	4 cut(s)	274, 391, 406, 535
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	238, 384, 444
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	242, 352, 484, 600
BspANI	GGCC	3 cut(s)	238, 384, 444
BspCNI	CTCAG	6 cut(s)	240, 378, 405, 453, 517, 534
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	306, 467
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	110, 529
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	337, 451
BstBAI	YACGTR	3 cut(s)	301, 569, 631
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	8 cut(s)	227, 312, 386, 413, 461, 504, 542, 561
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	4 cut(s)	10, 22, 430, 617
BstH2I	RGCGCY	2 cut(s)	436, 542
BstHHI	GCGC	2 cut(s)	435, 541
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 349, 441
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	184, 231
BstXI	CCANNNNNNTGG	1 cut(s)	36
BsuRI	GGCC	3 cut(s)	238, 384, 444
BtsCI	GGATG	4 cut(s)	10, 22, 430, 617
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 458
Cac8I	GCNNGC	1 cut(s)	437
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	2 cut(s)	435, 541
Cfr10I	RCCGGY	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	76, 442
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	3 cut(s)	178, 518, 583
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	8 cut(s)	227, 312, 386, 413, 461, 504, 542, 561
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	301
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	3 cut(s)	181, 521, 586
FaiI	YATR	7 cut(s)	71, 167, 179, 519, 551, 572, 584
FatI	CATG	3 cut(s)	177, 517, 582
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	173, 245
FokI	GGATG	4 cut(s)	17, 29, 437, 604
Fsp4HI	GCNGC	2 cut(s)	173, 245
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	2 cut(s)	434, 540
GluI	GCNGC	2 cut(s)	173, 245
GsaI	CCCAGC	2 cut(s)	86, 380
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	2 cut(s)	436, 542
HaeIII	GGCC	3 cut(s)	238, 384, 444
HapII	CCGG	2 cut(s)	79, 436
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	435, 541
Hin1II	CATG	3 cut(s)	181, 521, 586
Hin6I	GCGC	2 cut(s)	433, 539
HinP1I	GCGC	2 cut(s)	433, 539
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	2 cut(s)	79, 436
HphI	GGTGA	2 cut(s)	289, 439
Hpy166II	GTNNAC	4 cut(s)	10, 39, 67, 333
Hpy188I	TCNGA	5 cut(s)	104, 230, 259, 414, 507
Hpy188III	TCNNGA	2 cut(s)	23, 518
Hpy8I	GTNNAC	4 cut(s)	10, 39, 67, 333
HpyAV	CCTTC	3 cut(s)	139, 284, 397
HpyCH4III	ACNGT	2 cut(s)	337, 451
HpyCH4IV	ACGT	4 cut(s)	59, 300, 568, 630
HpyCH4V	TGCA	3 cut(s)	172, 247, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 349, 441
HpyF3I	CTNAG	8 cut(s)	227, 312, 386, 413, 461, 504, 542, 561
HpySE526I	ACGT	4 cut(s)	59, 300, 568, 630
Hsp92II	CATG	3 cut(s)	181, 521, 586
HspAI	GCGC	2 cut(s)	433, 539
KroI	GCCGGC	1 cut(s)	435
KroNI	GCCGGC	1 cut(s)	437
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	4 cut(s)	46, 340, 430, 471
LpnPI	CCDG	9 cut(s)	29, 68, 92, 170, 362, 398, 425, 449, 462
Lsp1109I	GCAGC	2 cut(s)	184, 231
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	4 cut(s)	59, 300, 568, 630
MaeIII	GTNAC	2 cut(s)	367, 564
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	555
MroNI	GCCGGC	1 cut(s)	435
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	2 cut(s)	79, 436
MwoI	GCNNNNNNNGC	3 cut(s)	244, 349, 441
NaeI	GCCGGC	1 cut(s)	437
NdeII	GATC	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	435
NlaIII	CATG	3 cut(s)	181, 521, 586
NlaIV	GGNNCC	2 cut(s)	306, 467
NmuCI	GTSAC	2 cut(s)	367, 564
PagI	TCATGA	1 cut(s)	517
PdiI	GCCGGC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	174, 246
PmaCI	CACGTG	1 cut(s)	301
PmlI	CACGTG	1 cut(s)	301
Ppu21I	YACGTR	3 cut(s)	301, 569, 631
PspCI	CACGTG	1 cut(s)	301
PspFI	CCCAGC	2 cut(s)	82, 376
PspN4I	GGNNCC	2 cut(s)	306, 467
PspPI	GGNCC	2 cut(s)	76, 442
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	173, 245
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	2 cut(s)	76, 442
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	491
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	555
SsiI	CCGC	4 cut(s)	242, 352, 484, 600
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	1 cut(s)	603
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	337, 451
TaiI	ACGT	4 cut(s)	62, 303, 571, 633
TasI	AATT	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	2 cut(s)	372, 465
TseFI	GTSAC	2 cut(s)	367, 564
TseI	GCWGC	2 cut(s)	172, 244
Tsp45I	GTSAC	2 cut(s)	367, 564
TspDTI	ATGAA	4 cut(s)	149, 506, 534, 566
TspRI	CASTG	2 cut(s)	372, 465
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	555
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.